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Paul Klemm paulklemm

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paulklemm / Shader_Error
Last active Aug 29, 2015
WebGL Shader Fehler
View Shader_Error
THREE.WebGLShader: gl.getShaderInfoLog() ERROR: 0:55: '*' : wrong operand types no operation '*' exists that takes a left-hand operand of type 'highp float' and a right operand of type 'const int' (or there is no acceptable conversion)
three.min.js:581 1: precision highp float;
2: precision highp int;
5: #define MAX_DIR_LIGHTS 0
6: #define MAX_POINT_LIGHTS 0
7: #define MAX_SPOT_LIGHTS 0
8: #define MAX_HEMI_LIGHTS 0
paulklemm / 0_reuse_code.js
Last active Aug 29, 2015
Here are some things you can do with Gists in GistBox.
View 0_reuse_code.js
// Use Gists to store code you would like to remember later on
console.log(window); // log the "window" object to the console
paulklemm / gputools install
Last active Oct 13, 2015
Error on installing gputools r package
View gputools install

Keybase proof

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paulklemm / RNAcentral_Transcripts_Cuffdiff_warnings.txt
Created Oct 28, 2016
RNACentral Transcripts throwing warnings in Cuffdiff
View RNAcentral_Transcripts_Cuffdiff_warnings.txt
paulklemm /
Created Nov 14, 2016
DEXSeq prepare annotation throws error for RNACentral GTF file
# Convert GFF3 to GTF file
gunzip --verbose Mus_musculus.GRCm38.gff3.gz
# Download gffread source and compile it
mkdir gffread_build
cd gffread_build
git clone
git clone
cd gffread
paulklemm /
Last active Dec 13, 2016
Install Flexbar Error
curl -sL | tar xz
# Download required libraries
curl -sL | tar xz
curl -sL | tar xJ
mv tbb2017_20161128oss/include flexbar-2.7.0
mv seqan-library-2.1.1/include/* flexbar-2.7.0/include
cd flexbar-2.7.0
cmake .
paulklemm / hyper.js
Created Apr 27, 2017
Hyper.js settings
View hyper.js
// Future versions of Hyper may add additional config options,
// which will not automatically be merged into this file.
// See for all currently supported options.
module.exports = {
config: {
// default font size in pixels for all tabs
fontSize: 16,
// font family with optional fallbacks
View gist:72690458056e8ddb79c2
All criticized points were considered in the revision. I think the paper substantially improved. The distinction between `Kvik` and `Kvik Pathways` is made clear. A list of contributions makes it easier to follow the structure. I think you should consider putting the requirement analysis into a dedicated section.
I see nothing in the paper that gives me a reason to not approve it.
I have noticed two minor typos:
Typo: Missing whitespace after sentence „Kvik Pathways follows the three-tier architecture in web applications using a powerful back-end for statistical analyses and retrieval of metadata.“
Missing verb? „Kvik Pathways Cytoscape.js to create a pathway visualization from the list of nodes and edges and overlay the nodes on the pathway image.“
Apart from the paper, I have one comment on your response on my review w.r.t. the differences regarding the NIK paper. You stated that
paulklemm / .Rprofile
Created Aug 29, 2018
My default .Rprofile settings
View .Rprofile
# See
# auto match brackets and quotes
rtichoke.auto_match = TRUE,
# when using history search (ctrl-r/ctrl-s in emacs mode), do not show duplicate results
rtichoke.history_search_no_duplicates = TRUE