SlicerJupyter launch log

gistfile1.txt

Collecting pillow
  Downloading Pillow-8.1.0-cp36-cp36m-macosx_10_10_x86_64.whl (2.2 MB)
Installing collected packages: pillow
  Attempting uninstall: pillow
    Found existing installation: Pillow 8.0.1
    Uninstalling Pillow-8.0.1:
      Successfully uninstalled Pillow-8.0.1
Successfully installed pillow-8.1.0
WARNING: You are using pip version 20.3.3; however, version 21.0.1 is available.
You should consider upgrading via the '/Applications/MedicalImaging/Slicer.app/Contents/bin/./python-real -m pip install --upgrade pip' command.
Collecting ipycanvas
  Downloading ipycanvas-0.8.2-py2.py3-none-any.whl (246 kB)
Requirement already satisfied: numpy in /Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages (from ipycanvas) (1.19.2)
Requirement already satisfied: pillow>=6.0 in /Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages (from ipycanvas) (8.1.0)
Collecting ipywidgets
  Downloading ipywidgets-7.6.3-py2.py3-none-any.whl (121 kB)
Collecting ipykernel>=4.5.1
  Downloading ipykernel-5.4.3-py3-none-any.whl (120 kB)
Collecting ipython>=4.0.0
  Downloading ipython-7.16.1-py3-none-any.whl (785 kB)
Requirement already satisfied: jedi>=0.10 in /Applications/MedicalImaging/Slicer.app/Contents/Extensions-29702/SlicerJupyter/lib/python3.6/site-packages (from ipython>=4.0.0->ipywidgets) (0.18.0)
Requirement already satisfied: setuptools>=18.5 in /Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages (from ipython>=4.0.0->ipywidgets) (50.3.2)
Requirement already satisfied: parso<0.9.0,>=0.8.0 in /Applications/MedicalImaging/Slicer.app/Contents/Extensions-29702/SlicerJupyter/lib/python3.6/site-packages (from jedi>=0.10->ipython>=4.0.0->ipywidgets) (0.8.1)
Collecting jupyterlab-widgets>=1.0.0
  Downloading jupyterlab_widgets-1.0.0-py3-none-any.whl (243 kB)
Collecting nbformat>=4.2.0
  Downloading nbformat-5.1.2-py3-none-any.whl (113 kB)
Collecting jsonschema!=2.5.0,>=2.4
  Downloading jsonschema-3.2.0-py2.py3-none-any.whl (56 kB)
Requirement already satisfied: six>=1.11.0 in /Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets) (1.15.0)
Collecting attrs>=17.4.0
  Downloading attrs-20.3.0-py2.py3-none-any.whl (49 kB)
Collecting prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0
  Downloading prompt_toolkit-3.0.16-py3-none-any.whl (366 kB)
Collecting pyrsistent>=0.14.0
  Downloading pyrsistent-0.17.3.tar.gz (106 kB)
Collecting tornado>=4.2
  Downloading tornado-6.1-cp36-cp36m-macosx_10_9_x86_64.whl (416 kB)
Collecting traitlets>=4.3.1
  Downloading traitlets-4.3.3-py2.py3-none-any.whl (75 kB)
Collecting widgetsnbextension~=3.5.0
  Downloading widgetsnbextension-3.5.1-py2.py3-none-any.whl (2.2 MB)
Collecting notebook>=4.4.1
  Downloading notebook-6.2.0-py3-none-any.whl (9.5 MB)
Requirement already satisfied: argon2-cffi in /Applications/MedicalImaging/Slicer.app/Contents/Extensions-29702/SlicerJupyter/lib/python3.6/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets) (20.1.0)
Collecting jupyter-client
  Downloading jupyter_client-6.1.11-py3-none-any.whl (108 kB)
Collecting jupyter-core
  Downloading jupyter_core-4.7.1-py3-none-any.whl (82 kB)
Collecting python-dateutil>=2.1
  Downloading python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB)
Collecting pyzmq>=17
  Downloading pyzmq-22.0.2-cp36-cp36m-macosx_10_9_x86_64.whl (1.1 MB)
Collecting Send2Trash>=1.5.0
  Downloading Send2Trash-1.5.0-py3-none-any.whl (12 kB)
Collecting terminado>=0.8.3
  Downloading terminado-0.9.2-py3-none-any.whl (14 kB)
Collecting ipyevents
  Downloading ipyevents-0.8.1-py2.py3-none-any.whl (150 kB)
Collecting jupyter
  Downloading jupyter-1.0.0-py2.py3-none-any.whl (2.7 kB)
Collecting pandas
  Downloading pandas-1.1.5-cp36-cp36m-macosx_10_9_x86_64.whl (10.2 MB)
Collecting pytz>=2017.2
  Downloading pytz-2021.1-py2.py3-none-any.whl (510 kB)
Collecting appnope
  Downloading appnope-0.1.2-py2.py3-none-any.whl (4.3 kB)
Requirement already satisfied: cffi>=1.0.0 in /Applications/MedicalImaging/Slicer.app/Contents/Extensions-29702/SlicerJupyter/lib/python3.6/site-packages (from argon2-cffi->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets) (1.14.5)
Requirement already satisfied: pycparser in /Applications/MedicalImaging/Slicer.app/Contents/Extensions-29702/SlicerJupyter/lib/python3.6/site-packages (from cffi>=1.0.0->argon2-cffi->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets) (2.20)
Collecting backcall
  Downloading backcall-0.2.0-py2.py3-none-any.whl (11 kB)
Collecting decorator
  Downloading decorator-4.4.2-py2.py3-none-any.whl (9.2 kB)
Collecting importlib-metadata
  Downloading importlib_metadata-3.4.0-py3-none-any.whl (10 kB)
Collecting typing-extensions>=3.6.4
  Downloading typing_extensions-3.7.4.3-py3-none-any.whl (22 kB)
Collecting zipp>=0.5
  Downloading zipp-3.4.0-py3-none-any.whl (5.2 kB)
Collecting ipython-genutils
  Downloading ipython_genutils-0.2.0-py2.py3-none-any.whl (26 kB)
Collecting jinja2
  Downloading Jinja2-2.11.3-py2.py3-none-any.whl (125 kB)
Collecting MarkupSafe>=0.23
  Downloading MarkupSafe-1.1.1-cp36-cp36m-macosx_10_9_x86_64.whl (16 kB)
Collecting jupyter-console
  Downloading jupyter_console-6.2.0-py3-none-any.whl (22 kB)
Collecting nbconvert
  Downloading nbconvert-6.0.7-py3-none-any.whl (552 kB)
Collecting entrypoints>=0.2.2
  Downloading entrypoints-0.3-py2.py3-none-any.whl (11 kB)
Collecting mistune<2,>=0.8.1
  Downloading mistune-0.8.4-py2.py3-none-any.whl (16 kB)
Collecting nbclient<0.6.0,>=0.5.0
  Downloading nbclient-0.5.2-py3-none-any.whl (65 kB)
Collecting pandocfilters>=1.4.1
  Downloading pandocfilters-1.4.3.tar.gz (16 kB)
Collecting pygments
  Downloading Pygments-2.7.4-py3-none-any.whl (950 kB)
Collecting async-generator
  Downloading async_generator-1.10-py3-none-any.whl (18 kB)
Collecting bleach
  Downloading bleach-3.3.0-py2.py3-none-any.whl (283 kB)
Requirement already satisfied: packaging in /Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages (from bleach->nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets) (20.4)
Collecting defusedxml
  Downloading defusedxml-0.6.0-py2.py3-none-any.whl (23 kB)
Collecting jupyterlab-pygments
  Downloading jupyterlab_pygments-0.1.2-py2.py3-none-any.whl (4.6 kB)
Collecting nest-asyncio
  Downloading nest_asyncio-1.5.1-py3-none-any.whl (5.0 kB)
Collecting orjson
  Downloading orjson-3.4.8-cp36-cp36m-macosx_10_7_x86_64.whl (229 kB)
Requirement already satisfied: pyparsing>=2.0.2 in /Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages (from packaging->bleach->nbconvert->notebook>=4.4.1->widgetsnbextension~=3.5.0->ipywidgets) (2.4.7)
Collecting pexpect
  Downloading pexpect-4.8.0-py2.py3-none-any.whl (59 kB)
Collecting ptyprocess
  Downloading ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB)
Collecting pickleshare
  Downloading pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB)
Collecting prometheus-client
  Downloading prometheus_client-0.9.0-py2.py3-none-any.whl (53 kB)
Collecting qtconsole
  Downloading qtconsole-5.0.2-py3-none-any.whl (119 kB)
Collecting qtpy
  Downloading QtPy-1.9.0-py2.py3-none-any.whl (54 kB)
Collecting testpath
  Downloading testpath-0.4.4-py2.py3-none-any.whl (163 kB)
Collecting wcwidth
  Downloading wcwidth-0.2.5-py2.py3-none-any.whl (30 kB)
Collecting webencodings
  Downloading webencodings-0.5.1-py2.py3-none-any.whl (11 kB)
Building wheels for collected packages: pyrsistent, pandocfilters
  Building wheel for pyrsistent (setup.py): started
  Building wheel for pyrsistent (setup.py): finished with status 'done'
  Created wheel for pyrsistent: filename=pyrsistent-0.17.3-cp36-cp36m-macosx_10_13_x86_64.whl size=55882 sha256=d68a91d52cddc1faef2154a812c95e6189661d7013d7dca01aa30595c56a898f
  Stored in directory: /Users/p2p/Library/Caches/pip/wheels/34/13/19/294da8e11bce7e563afee51251b9fa878185e14f4b5caf00cb
  Building wheel for pandocfilters (setup.py): started
  Building wheel for pandocfilters (setup.py): finished with status 'done'
  Created wheel for pandocfilters: filename=pandocfilters-1.4.3-py3-none-any.whl size=7991 sha256=dd96f1e261c307176bb58184adc48289aa7ba5422c844153b4fa9ede8f971f21
  Stored in directory: /Users/p2p/Library/Caches/pip/wheels/12/12/89/fe63ac4d6ee6440daab4db77b78c63f7f192b700f844b6639f
Successfully built pyrsistent pandocfilters
Installing collected packages: zipp, typing-extensions, ipython-genutils, decorator, traitlets, pyrsistent, importlib-metadata, attrs, wcwidth, tornado, pyzmq, python-dateutil, ptyprocess, jupyter-core, jsonschema, webencodings, pygments, prompt-toolkit, pickleshare, pexpect, nest-asyncio, nbformat, MarkupSafe, jupyter-client, backcall, async-generator, appnope, testpath, pandocfilters, nbclient, mistune, jupyterlab-pygments, jinja2, ipython, entrypoints, defusedxml, bleach, terminado, Send2Trash, prometheus-client, nbconvert, ipykernel, notebook, widgetsnbextension, qtpy, jupyterlab-widgets, qtconsole, pytz, orjson, jupyter-console, ipywidgets, pandas, jupyter, ipyevents, ipycanvas
Successfully installed MarkupSafe-1.1.1 Send2Trash-1.5.0 appnope-0.1.2 async-generator-1.10 attrs-20.3.0 backcall-0.2.0 bleach-3.3.0 decorator-4.4.2 defusedxml-0.6.0 entrypoints-0.3 importlib-metadata-3.4.0 ipycanvas-0.8.2 ipyevents-0.8.1 ipykernel-5.4.3 ipython-7.16.1 ipython-genutils-0.2.0 ipywidgets-7.6.3 jinja2-2.11.3 jsonschema-3.2.0 jupyter-1.0.0 jupyter-client-6.1.11 jupyter-console-6.2.0 jupyter-core-4.7.1 jupyterlab-pygments-0.1.2 jupyterlab-widgets-1.0.0 mistune-0.8.4 nbclient-0.5.2 nbconvert-6.0.7 nbformat-5.1.2 nest-asyncio-1.5.1 notebook-6.2.0 orjson-3.4.8 pandas-1.1.5 pandocfilters-1.4.3 pexpect-4.8.0 pickleshare-0.7.5 prometheus-client-0.9.0 prompt-toolkit-3.0.16 ptyprocess-0.7.0 pygments-2.7.4 pyrsistent-0.17.3 python-dateutil-2.8.1 pytz-2021.1 pyzmq-22.0.2 qtconsole-5.0.2 qtpy-1.9.0 terminado-0.9.2 testpath-0.4.4 tornado-6.1 traitlets-4.3.3 typing-extensions-3.7.4.3 wcwidth-0.2.5 webencodings-0.5.1 widgetsnbextension-3.5.1 zipp-3.4.0
WARNING: You are using pip version 20.3.3; however, version 21.0.1 is available.
You should consider upgrading via the '/Applications/MedicalImaging/Slicer.app/Contents/bin/./python-real -m pip install --upgrade pip' command.
Enabling notebook extension jupyter-js-widgets/extension...
      - Validating: OK
Traceback (most recent call last):
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/bin/jupyter-nbextension", line 8, in <module>
    sys.exit(main())
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/jupyter_core/application.py", line 254, in launch_instance
    return super(JupyterApp, cls).launch_instance(argv=argv, **kwargs)
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/traitlets/config/application.py", line 664, in launch_instance
    app.start()
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/notebook/nbextensions.py", line 980, in start
    super().start()
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/jupyter_core/application.py", line 243, in start
    self.subapp.start()
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/notebook/nbextensions.py", line 888, in start
    self.toggle_nbextension_python(self.extra_args[0])
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/notebook/nbextensions.py", line 864, in toggle_nbextension_python
    logger=self.log)
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/notebook/nbextensions.py", line 475, in enable_nbextension_python
    logger=logger)
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/notebook/nbextensions.py", line 372, in _set_nbextension_state_python
    m, nbexts = _get_nbextension_metadata(module)
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/notebook/nbextensions.py", line 1114, in _get_nbextension_metadata
    m = import_item(module)
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/traitlets/utils/importstring.py", line 42, in import_item
    return __import__(parts[0])
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/ipyevents/__init__.py", line 3, in <module>
    from .events import *
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/ipyevents/events.py", line 1, in <module>
    from ipywidgets import CoreWidget
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/ipywidgets/__init__.py", line 25, in <module>
    from .widgets import *
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/ipywidgets/widgets/__init__.py", line 4, in <module>
    from .widget import Widget, CallbackDispatcher, register, widget_serialization
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/ipywidgets/widgets/widget.py", line 18, in <module>
    from ipykernel.comm import Comm
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/ipykernel/__init__.py", line 2, in <module>
    from .connect import *
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/ipykernel/connect.py", line 16, in <module>
    import jupyter_client
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/jupyter_client/__init__.py", line 4, in <module>
    from .connect import *
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/jupyter_client/connect.py", line 21, in <module>
    import zmq
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/zmq/__init__.py", line 103, in <module>
    from zmq import backend
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/zmq/backend/__init__.py", line 32, in <module>
    raise original_error from None
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/zmq/backend/__init__.py", line 27, in <module>
    _ns = select_backend(first)
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/zmq/backend/select.py", line 32, in select_backend
    mod = import_module(name)
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/importlib/__init__.py", line 126, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/zmq/backend/cython/__init__.py", line 6, in <module>
    from . import (
ImportError: dlopen(/Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/zmq/backend/cython/constants.cpython-36m-darwin.so, 1): Library not loaded: @loader_path/../../.dylibs/libzmq.5.dylib
  Referenced from: /Applications/MedicalImaging/Slicer.app/Contents/lib/Python/lib/python3.6/site-packages/zmq/backend/cython/constants.cpython-36m-darwin.so
  Reason: Incompatible library version: constants.cpython-36m-darwin.so requires version 8.0.0 or later, but libzmq.5.dylib provides version 5.0.0
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/Applications/MedicalImaging/Slicer.app/Contents/Extensions-29702/SlicerJupyter/lib/Slicer-4.13/qt-scripted-modules/JupyterNotebooks.py", line 55, in installRequiredPackages
    slicer.util._executePythonModule("jupyter", "nbextension enable --py ipyevents".split(" "))
  File "/Applications/MedicalImaging/Slicer.app/Contents/bin/Python/slicer/util.py", line 2710, in _executePythonModule
    logProcessOutput(proc)
  File "/Applications/MedicalImaging/Slicer.app/Contents/bin/Python/slicer/util.py", line 2682, in logProcessOutput
    raise CalledProcessError(retcode, proc.args, output=proc.stdout, stderr=proc.stderr)
subprocess.CalledProcessError: Command '['/Applications/MedicalImaging/Slicer.app/Contents/bin/../bin/PythonSlicer', '-m', 'jupyter', 'nbextension', 'enable', '--py', 'ipyevents']' returned non-zero exit status 1.