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pkra/lens-jats-math.xml

Last active August 29, 2015 14:07
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Lens: JATS sample for math-related issues.
Raw
lens-jats-math.xml
<?xml version="1.0" encoding="utf-8" ?>
<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD with MathML3 v1.1d1 20130915//EN" "JATS-archivearticle1-mathml3.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xml:lang="en" dtd-version="1.1d1">
<front>
<journal-meta>
<publisher>
<publisher-name>American Mathematical Society</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-categories>
<subj-group subj-group-type="display-channel">
<subject>Research article</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Mathematical article with lots of
<inline-formula content-type="math/tex">
<tex-math>{\mathbb N}^2 \times \mathbb {R}</tex-math>
</inline-formula>
equations.
</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name name-style="western">
<given-names>Mathy McAuthorsen</given-names>
</name>
</contrib>
<aff>Institute for Advanced Webby Math</aff>
</contrib-group>
<abstract>
<title>Abstract</title>
<p>In this minimal example we explore issues with math in Lens
</p>
</abstract>
</article-meta>
</front>
<body>
<sec id="ltxid1" disp-level="section">
<title>Titles with math are cut off at the first
<inline-formula content-type="math/tex">
<tex-math>{\mathbb N}^2 \times {\mathbb R}</tex-math>
</inline-formula> equation.
</title>
<p>The title should read:
<br/> Titles with math are cut off at the first
<inline-formula content-type="math/tex">
<tex-math>{\mathbb N}^2 \times {\mathbb R}</tex-math>
</inline-formula> equation.</p>
<p>
<bold>Whitespace around math</bold>
<br /> Whitespace is missing
<inline-formula content-type="math/tex">
<tex-math>{\mathbb N}^2 \times \mathbb {R}</tex-math>
</inline-formula> after inline equations (when appropriate) but is forced in front of an equation, e.g., in parenthesis (
<inline-formula content-type="math/tex">
<tex-math>f(0)=0</tex-math>
</inline-formula>), even when inappropriate.
</p>
<p>
<bold>Math in figures</bold>
<br /> See
<xref ref-type="fig" rid="fig1">Figure 1A</xref>
</p>
<fig id="fig1" position="float">
<label>Figure label without math rendering
<inline-formula content-type="math/tex">
<tex-math>{\mathbb N}^2 \times {\mathbb R}.</tex-math>
</inline-formula>
</label>
<caption>
<title>Titles with math are not cut off at the first
<inline-formula content-type="math/tex">
<tex-math>{\mathbb N}^2 \times {\mathbb R}.</tex-math>
</inline-formula> equation.</title>
<p>
<inline-formula content-type="math/tex">
<tex-math>{\mathbb N}^2 \times {\mathbb R}.</tex-math>
</inline-formula>
</p>
</caption>
<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="http://upload.wikimedia.org/wikipedia/commons/0/00/Equation_of_time.png" />
</fig>
<p>
<bold>Math in references</bold>
<br /> See [
<xref rid="AEG0" ref-type="bibr">AEG0</xref>].
</p>
<p>
<bold> References to equations do not work</bold>
<br /> E.g.,
<disp-formula content-type="math/tex">
<tex-math>\begin{equation} \frac {\partial S_r}{\partial s}= L_{r-1}(f_s)+ f_s(S_1S_r-(r+1)S_{r+1})+f_s tr(T_{r-1} \overline {R}_N)+E^T_s(S_r), \tag{3}\cssId{derivata.elbert}{} \end{equation}
</tex-math>
</disp-formula>
Then refer to its ID, say (
<xref rid="derivata.elbert">3</xref>).(The MathML equivalent also does not work; it's commented out below.)
<!-- <disp-formula>
<mml:math>
<mml:mtable>
<mml:mlabeledtr>
<mml:mtd id="mjx-eqn-3">
<mml:mtext>(3)</mml:mtext>
</mml:mtd>
<mml:mtd>
<mml:mfrac>
<mml:mrow>
<mml:mi mathvariant="normal">∂</mml:mi>
<mml:msub>
<mml:mi>S</mml:mi>
<mml:mi>r</mml:mi>
</mml:msub>
</mml:mrow>
<mml:mrow>
<mml:mi mathvariant="normal">∂</mml:mi>
<mml:mi>s</mml:mi>
</mml:mrow>
</mml:mfrac>
<mml:mo>=</mml:mo>
<mml:msub>
<mml:mi>L</mml:mi>
<mml:mrow class="MJX-TeXAtom-ORD">
<mml:mi>r</mml:mi>
<mml:mo>−</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:msub>
<mml:mi>f</mml:mi>
<mml:mi>s</mml:mi>
</mml:msub>
<mml:mo stretchy="false">)</mml:mo>
<mml:mo>+</mml:mo>
<mml:msub>
<mml:mi>f</mml:mi>
<mml:mi>s</mml:mi>
</mml:msub>
<mml:mo stretchy="false">(</mml:mo>
<mml:msub>
<mml:mi>S</mml:mi>
<mml:mn>1</mml:mn>
</mml:msub>
<mml:msub>
<mml:mi>S</mml:mi>
<mml:mi>r</mml:mi>
</mml:msub>
<mml:mo>−</mml:mo>
<mml:mo stretchy="false">(</mml:mo>
<mml:mi>r</mml:mi>
<mml:mo>+</mml:mo>
<mml:mn>1</mml:mn>
<mml:mo stretchy="false">)</mml:mo>
<mml:msub>
<mml:mi>S</mml:mi>
<mml:mrow class="MJX-TeXAtom-ORD">
<mml:mi>r</mml:mi>
<mml:mo>+</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
<mml:mo stretchy="false">)</mml:mo>
<mml:mo>+</mml:mo>
<mml:msub>
<mml:mi>f</mml:mi>
<mml:mi>s</mml:mi>
</mml:msub>
<mml:mi>t</mml:mi>
<mml:mi>r</mml:mi>
<mml:mo stretchy="false">(</mml:mo>
<mml:msub>
<mml:mi>T</mml:mi>
<mml:mrow class="MJX-TeXAtom-ORD">
<mml:mi>r</mml:mi>
<mml:mo>−</mml:mo>
<mml:mn>1</mml:mn>
</mml:mrow>
</mml:msub>
<mml:msub>
<mml:mover>
<mml:mi>R</mml:mi>
<mml:mo accent="false">¯</mml:mo>
</mml:mover>
<mml:mi>N</mml:mi>
</mml:msub>
<mml:mo stretchy="false">)</mml:mo>
<mml:mo>+</mml:mo>
<mml:msubsup>
<mml:mi>E</mml:mi>
<mml:mi>s</mml:mi>
<mml:mi>T</mml:mi>
</mml:msubsup>
<mml:mo stretchy="false">(</mml:mo>
<mml:msub>
<mml:mi>S</mml:mi>
<mml:mi>r</mml:mi>
</mml:msub>
<mml:mo stretchy="false">)</mml:mo>
<mml:mo>,</mml:mo>
<mml:mrow id="derivata.elbert" />
</mml:mtd>
</mml:mlabeledtr>
</mml:mtable>
</mml:math>
</disp-formula>-->
</p>
<p>
<bold>Lens picks the first child of an equation element</bold>
<br /> Ideally, Lens could choose client dependent, e.g., on old or mobile browsers use fallback image. Alternatively, this could be done by MathJax but that would require coding everything into annotation-xml elements.
</p>
<p>
<bold>MathJax timinig problems</bold>
<br /> Erratically, MathJax output is tripped up. Maybe a race of Lens vs MathJax or a display:none problem
</p>
</sec>
<sec id="ltxid25" disp-level="section">
<title>References</title>
<ref-list>
<ref id="AEG0">
<label>[1]</label>
<mixed-citation>
<person-group person-group-type="author">
<name name-style="western">
<surname>McAutherson</surname>
<given-names>Mathy</given-names>
</name>
</person-group>,
<article-title>A reference with
<inline-formula content-type="math/tex">
<tex-math>\mathbb {N}^2\times \mathbb {R}</tex-math>
</inline-formula>
inline math.
</article-title>
<source>Web J. Math.</source>
<volume>1</volume>
<issue>2</issue>
<fpage>3</fpage>
<lpage>4</lpage> MR
<ext-link xlink:href="http://www.ams.org/mathscinet-getitem?mr=00001">00001</ext-link>
</mixed-citation>
</ref>
</ref-list>
</sec>
</body>
</article>
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