Created
May 14, 2019 11:46
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job_conf.xml mulled enabled destination: local
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ls /export/galaxy/database/job_working_directory/000/243 | |
totale 180K | |
drwxr-xr-x. 3 root root 4,0K 10 mag 14.27 dataset_454_files | |
-rw-r--r--. 1 galaxy galaxy 2 10 mag 14.27 galaxy_243.ec | |
-rwxr-xr-x. 1 galaxy galaxy 6,3K 10 mag 14.27 galaxy_243.sh | |
drwxr-xr-x. 2 galaxy galaxy 4,0K 10 mag 14.27 home | |
-rw-r--r--. 1 galaxy galaxy 11 10 mag 14.27 __instrument_core_epoch_end | |
-rw-r--r--. 1 galaxy galaxy 11 10 mag 14.27 __instrument_core_epoch_start | |
-rw-r--r--. 1 galaxy galaxy 1 10 mag 14.27 __instrument_core_galaxy_memory_mb | |
-rw-r--r--. 1 galaxy galaxy 2 10 mag 14.27 __instrument_core_galaxy_slots | |
-rw-r--r--. 1 galaxy galaxy 0 10 mag 14.27 memory_statement.log | |
-rw-r--r--. 1 galaxy galaxy 2,8K 10 mag 14.27 metadata_in_HistoryDatasetAssociation_455_w1ZH1r | |
-rw-r--r--. 1 galaxy galaxy 2,3K 10 mag 14.27 metadata_in_HistoryDatasetAssociation_456_aO6bkl | |
-rw-r--r--. 1 galaxy galaxy 20 10 mag 14.27 metadata_kwds_HistoryDatasetAssociation_455_9CiD_A | |
-rw-r--r--. 1 galaxy galaxy 20 10 mag 14.27 metadata_kwds_HistoryDatasetAssociation_456_uG7ObN | |
-rw-r--r--. 1 galaxy galaxy 35 10 mag 14.27 metadata_out_HistoryDatasetAssociation_455_vYRMxm | |
-rw-r--r--. 1 galaxy galaxy 36 10 mag 14.27 metadata_out_HistoryDatasetAssociation_456_F67Cei | |
-rw-r--r--. 1 galaxy galaxy 2 10 mag 14.27 metadata_override_HistoryDatasetAssociation_455_y4K0t1 | |
-rw-r--r--. 1 galaxy galaxy 2 10 mag 14.27 metadata_override_HistoryDatasetAssociation_456_LZvfXx | |
-rw-r--r--. 1 galaxy galaxy 44 10 mag 14.27 metadata_results_HistoryDatasetAssociation_455_ZezDh2 | |
-rw-r--r--. 1 galaxy galaxy 44 10 mag 14.27 metadata_results_HistoryDatasetAssociation_456_bv44Ta | |
-rw-r--r--. 1 galaxy galaxy 81K 10 mag 14.27 registry.xml | |
-rw-------. 1 galaxy galaxy 73 10 mag 14.27 set_metadata_qbggpt.py | |
drwxr-xr-x. 2 galaxy galaxy 4,0K 10 mag 14.27 tmp | |
drwxr-xr-x. 2 galaxy galaxy 4,0K 10 mag 14.27 tmp.20190510-142728 | |
-rwxr-xr-x. 1 galaxy galaxy 732 10 mag 14.27 tool_script.sh | |
drwxr-xr-x. 2 galaxy galaxy 4,0K 10 mag 14.27 working | |
ls /export/galaxy/database/job_working_directory/000/243/working | |
output.html output.txt Sc_IP _1__fastq |
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<?xml version="1.0"?> | |
<job_conf> | |
<plugins> | |
<plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="2"/> | |
</plugins> | |
<handlers default="handlers"> | |
<handler id="handler0" tags="handlers"/> | |
<handler id="handler1" tags="handlers"/> | |
<handler id="handler2" tags="handlers"/> | |
<handler id="handler3" tags="handlers"/> | |
</handlers> | |
<destinations default="docker_local" > | |
<destination id="local" runner="local"> | |
<param id="local_slots">2</param> | |
</destination> | |
<destination id="docker_local" runner="local"> | |
<param id="local_slots">2</param> | |
<param id="docker_enabled">true</param> | |
<param id="docker_set_user">root</param> | |
<param id="docker_volumes">$galaxy_root:ro,$tool_directory:rw,$galaxy_root/database/tmp:rw,$job_directory:rw,$working_directory:rw,$default_file_path:rw</param> | |
</destination> | |
</destinations> | |
<tools> | |
<tool id="upload1" destination="local"/> | |
</tools> | |
<limits> | |
<limit type="registered_user_concurrent_jobs">4</limit> | |
<limit type="unregistered_user_concurrent_jobs">0</limit> | |
<limit type="job_walltime">72:00:00</limit> | |
<limit type="output_size">268435456000</limit> | |
</limits> | |
</job_conf> |
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