Created
May 14, 2019 11:24
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job_conf.xml chronos destination
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<?xml version="1.0"?> | |
<job_conf> | |
<plugins> | |
<plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/> | |
<plugin id="chronos" type="runner" load="galaxy.jobs.runners.chronos:ChronosJobRunner" workers="4"> | |
<param id="chronos">hostaname and port</param> | |
<!-- Hostname which runs Chronos instance. --> | |
<param id="owner">pietro.mandreoli@gmail.com</param> | |
<!-- The email address of the person responsible for the job. --> | |
<param id="username"></param> | |
<!-- Username to access Mesos cluster. --> | |
<param id="password"></param> | |
<!-- Password to access Mesos cluster. --> | |
<param id="insecure">false</param> | |
<!-- True to communicate with Chronos over HTTPS; false otherwise--> | |
</plugin> | |
</plugins> | |
<handlers default="handlers"> | |
<handler id="handler0" tags="handlers"/> | |
<handler id="handler1" tags="handlers"/> | |
<handler id="handler2" tags="handlers"/> | |
<handler id="handler3" tags="handlers"/> | |
</handlers> | |
<destinations default="chronos_dest"> | |
<destination id="local" runner="local"> | |
<param id="local_slots">2</param> | |
</destination> | |
<destination id="chronos_dest" runner="chronos"> | |
<param id="docker_enabled">true</param> | |
<param id="docker_memory">512</param> | |
<param id="docker_set_user">galaxy</param> | |
<param id="docker_cpu">2</param> | |
<param id="volumes">/export/galaxy/database/</param> | |
<param id="max_retries">2</param> | |
</destination> | |
</destinations> | |
<tools> | |
<tool id="upload1" destination="local"/> | |
</tools> | |
<limits> | |
<limit type="registered_user_concurrent_jobs">100</limit> | |
<limit type="unregistered_user_concurrent_jobs">0</limit> | |
<limit type="job_walltime">72:00:00</limit> | |
<limit type="output_size">268435456000</limit> | |
</limits> | |
</job_conf> |
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