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@pmandreoli
Created May 28, 2019 09:21
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fastqc.json
"name": "biocontainers-test-job",
"description": "Running fastqc job",
"command": "fastqc $MESOS_SANDBOX/Sc_IP.fastq",
"shell": true,
"retries": 1,
"cpus": 1.0,
"mem": 500.0,
"uris": [ "http://159.149.160.56/indigo_demo/Sc_IP.fastq" ],
"schedule": "R1//PT1M",
"container": {
"type": "DOCKER",
"image": "biocontainers/fastqc:0.11.5",
"forcePullImage": true,
"parameters": [
{
"key": "user",
"value": "root"
}
]
}
}
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