porterjamesj

#include <stdio.h>

int main (int argc, char ** argv) {
  int A[10][10];
  A[3][3] = 10;
  printf("i am ten: %d\n", *(((int*) A)+33));
}

porterjamesj

(defun josh/navigate (p s)
  (interactive "P\nsWhere to my prince? :")
  (let* ((move (if p #'next-line #'previous-line))
         (char-to-pos (lambda (c) (- c 96)))
         (nums (string-to-list s))
         (first (car nums))
         (count (apply '+ (mapcar (lambda (c) (if (equalp first c) 1 0)) nums))))
    ;; (ignore-errors
      (progn
        (funcall move (+ (funcall char-to-pos first) (* 26 (- count 1))))

porterjamesj

def dict_subset(d1, d2):
    """Return true if d2 is contained within d1."""
    if type(d1) is not dict or type(d2) is not dict:
        return False
    res = []
    for key, val in d2.items():
        if key in d1.keys():
            if type(val) is dict:
                res.append(dict_subset(d1[key], val))
            elif val != d1[key]:

porterjamesj

    LINK usr/lib/libjulia.dylib
Undefined symbols for architecture x86_64:
  "llvm::TargetRegistry::lookupTarget(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&)", referenced from:
      _jl_dump_function_asm in codegen.o
  "std::string::find_last_not_of(char, unsigned long) const", referenced from:
      llvm::SMDiagnostic::print(char const*, llvm::raw_ostream&, bool) const in libLLVMSupport.a(SourceMgr.o)
  "std::string::copy(char*, unsigned long, unsigned long) const", referenced from:
      llvm::sys::Path::makeUnique(bool, std::string*) in libLLVMSupport.a(Path.o)
  "std::string::find(char const*, unsigned long, unsigned long) const", referenced from:
      llvm::TernOpInit::Fold(llvm::Record*, llvm::MultiClass*) const in libLLVMTableGen.a(Record.o)

porterjamesj

type PhyloNode
    label::String
    children::Vector{PhyloNode}
    length::Real
end

function parsenewick(newick::String)
    newick = rstrip(newick,';')
    newick = replace(newick,":","+")
    newick_expr = parse(newick)

porterjamesj

function replace_(rep,expr::Expr)
    i = findfirst(x->x==:_,expr.args)
    if i == 0
        # recurse on subexprs one at a time
        # subexprs = expr.args[]
        error("dun goofed")
    else
        return Expr(expr.head,
                    [expr.args[1:i-1]
                     rep

porterjamesj

2013-12-30 11:38] torque-node172-16-1-250: Cufflinks on /glusterfs/users/jporter/scale/hg19_scale_project/work2/align/HG00109_1_M_120209_4/3_131109_hg19_scale_project_tophat/3_131109_hg19_scale_project
-sort.bam.
[2013-12-30 11:38] torque-node172-16-1-250: [05:38:07] Loading reference annotation and sequence.
[2013-12-30 12:41] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr17_ctg5_hap1'!
[2013-12-30 12:41] torque-node172-16-1-250: This contig will not be bias corrected.
[2013-12-30 12:41] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr17_gl000205_random'!
[2013-12-30 12:41] torque-node172-16-1-250: This contig will not be bias corrected.
[2013-12-30 12:48] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr19_gl000209_random'!
[2013-12-30 12:48] torque-node172-16-1-250: This contig will not be bias corrected.
[2013-12-30 12:48] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr1_gl000191_random'!

porterjamesj

Maui Scheduler General Public License

This product includes software developed for The University of New Mexico High Performance Computing Education and Research Center for use in the Maui Scheduler software.  Copyright (C) 2000 Science and Technology Corporation @ UNM, Software developed for The University of New Mexico.  All Rights Reserved.
Maui Scheduler is a trademark of Science & Technology Corporation @ UNM

THE SOFTWARE IS PROVIDED AS IS AND SCIENCE & TECHNOLOGY CORPORATION @ UNM (STC) AND THE UNIVERSITY OF NEW MEXICO (UNM) DISCLAIM ALL WARRANTIES RELATING TO THE SOFTWARE, WHETHER EXPRESSED OR IMPLIED, INCLUDING BUT NOT LIMITED TO ANY IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.  NEITHER UNM,
STC, NOR ANYONE INVOLVED IN THE CREATION, PRODUCTION, OR DELIVERY OF THE SOFTWARE SHALL BE LIABLE FOR ANY INDIRECT, CONSEQUENTIAL, OR INCIDENTAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE SOFTWARE EVEN IF UNM OR STC HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES OR

porterjamesj

(setq inhibit-startup-message t)

(global-set-key (kbd "M-n") 'forward-paragraph)
(global-set-key (kbd "M-p") 'backward-paragraph)

(setq backup-inhibited t)
(setq auto-save-default nil)
(setq create-lockfiles nil)

(defalias 'yes-or-no-p 'y-or-n-p)

porterjamesj

[2014-02-27 16:02:13]  DEBUG lt-chitcpd <<< New state: CLOSING
[2014-02-27 16:02:13]  DEBUG lt-chitcpd <<< Finished handling event PACKET_ARRIVAL on state FIN_WAIT_1
[2014-02-27 16:02:13]  DEBUG lt-chitcpd >>> Handling event PACKET_ARRIVAL on state CLOSING
[2014-02-27 16:02:13]  DEBUG lt-chitcpd <<< New state: CLOSING
[2014-02-27 16:02:13]  DEBUG lt-chitcpd >>> TCP data BEFORE handling:
[2014-02-27 16:02:13]  DEBUG lt-chitcpd    ······················································
[2014-02-27 16:02:13]  DEBUG lt-chitcpd                          CLOSING
[2014-02-27 16:02:13]  DEBUG lt-chitcpd
[2014-02-27 16:02:13]  DEBUG lt-chitcpd             ISS:        3949           IRS:        3949
[2014-02-27 16:02:13]  DEBUG lt-chitcpd         SND.UNA:        3950