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Created March 4, 2017 09:52
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dub build --compiler=ldmd2 --parallel --force
The determined compiler type "ldc" doesn't match the expected type "dmd". This will probably result in build errors.
Package mir-algorithm can be upgraded from 0.0.29 to 0.0.30.
Package gsl can be upgraded from 0.1.7 to 0.1.8.
Use "dub upgrade" to perform those changes.
Performing "debug" build using ldmd2 for x86_64.
dstats 1.0.3: building configuration "library"...
../../.dub/packages/dstats-1.0.3/source/dstats/regress.d(1056,8): Deprecation: dstats.summary.reduce is not visible from module regress
../../.dub/packages/dstats-1.0.3/source/dstats/regress.d(1056,8): Deprecation: dstats.alloc.max is not visible from module regress
../../.dub/packages/dstats-1.0.3/source/dstats/regress.d(1106,38): Deprecation: dstats.alloc.max is not visible from module regress
../../.dub/packages/dstats-1.0.3/source/dstats/regress.d(1109,31): Deprecation: dstats.alloc.max is not visible from module regress
../../.dub/packages/dstats-1.0.3/source/dstats/regress.d(2119,20): Deprecation: dstats.alloc.max is not visible from module regress
../../.dub/packages/dstats-1.0.3/source/dstats/regress.d(2226,15): Deprecation: dstats.alloc.max is not visible from module regress
../../.dub/packages/dstats-1.0.3/source/dstats/regress.d(2233,12): Deprecation: dstats.alloc.max is not visible from module regress
../../.dub/packages/dstats-1.0.3/source/dstats/tests.d(1458,24): Deprecation: dstats.summary.min is not visible from module tests
../../.dub/packages/dstats-1.0.3/source/dstats/tests.d(1461,24): Deprecation: dstats.summary.min is not visible from module tests
../../.dub/packages/dstats-1.0.3/source/dstats/tests.d(1501,9): Deprecation: dstats.summary.swap is not visible from module tests
../../.dub/packages/dstats-1.0.3/source/dstats/tests.d(1502,23): Deprecation: dstats.summary.min is not visible from module tests
../../.dub/packages/dstats-1.0.3/source/dstats/tests.d(1799,24): Deprecation: dstats.summary.min is not visible from module tests
../../.dub/packages/dstats-1.0.3/source/dstats/tests.d(1802,24): Deprecation: dstats.summary.min is not visible from module tests
../../.dub/packages/dstats-1.0.3/source/dstats/tests.d(1821,9): Deprecation: dstats.summary.swap is not visible from module tests
../../.dub/packages/dstats-1.0.3/source/dstats/tests.d(3594,20): Deprecation: dstats.summary.min is not visible from module tests
../../.dub/packages/dstats-1.0.3/source/dstats/tests.d(3596,20): Deprecation: dstats.summary.min is not visible from module tests
../../.dub/packages/dstats-1.0.3/source/dstats/tests.d(3637,31): Deprecation: dstats.summary.min is not visible from module tests
../../.dub/packages/dstats-1.0.3/source/dstats/tests.d(3646,9): Deprecation: dstats.summary.swap is not visible from module tests
tinyendian 0.1.2: building configuration "library"...
dyaml 0.5.3: building configuration "library"...
gsl 0.1.7: building configuration "library"...
mir-cpuid 0.4.2: building configuration "library"...
mir-internal 0.0.2: building configuration "library"...
mir-algorithm 0.0.29: building configuration "library"...
faster_lmm_d ~master: building configuration "application"...
Running pre-build commands...
The determined compiler type "ldc" doesn't match the expected type "dmd". This will probably result in build errors.
Performing "target-native" build using ldmd2 for x86_64.
mir-glas 0.1.1: building configuration "static"...
Compiling ../../.dub/packages/mir-glas-0.1.1/mir-glas/source/glas/precompiled/context.d...
Compiling ../../.dub/packages/mir-glas-0.1.1/mir-glas/source/glas/precompiled/l1c.d...
Compiling ../../.dub/packages/mir-glas-0.1.1/mir-glas/source/glas/precompiled/l1d.d...
Compiling ../../.dub/packages/mir-glas-0.1.1/mir-glas/source/glas/precompiled/l1s.d...
Warning: The -noboundscheck switch is deprecated, use -boundscheck=off instead.
Warning: The -noboundscheck switch is deprecated, use -boundscheck=off instead.
Warning: The -noboundscheck switch is deprecated, use -boundscheck=off instead.
Warning: The -noboundscheck switch is deprecated, use -boundscheck=off instead.
Compiling ../../.dub/packages/mir-glas-0.1.1/mir-glas/source/glas/precompiled/l1z.d...
Warning: The -noboundscheck switch is deprecated, use -boundscheck=off instead.
Compiling ../../.dub/packages/mir-glas-0.1.1/mir-glas/source/glas/precompiled/l3c.d...
Warning: The -noboundscheck switch is deprecated, use -boundscheck=off instead.
Compiling ../../.dub/packages/mir-glas-0.1.1/mir-glas/source/glas/precompiled/l3d.d...
Warning: The -noboundscheck switch is deprecated, use -boundscheck=off instead.
Compiling ../../.dub/packages/mir-glas-0.1.1/mir-glas/source/glas/precompiled/l3s.d...
Warning: The -noboundscheck switch is deprecated, use -boundscheck=off instead.
Compiling ../../.dub/packages/mir-glas-0.1.1/mir-glas/source/glas/precompiled/l3z.d...
Warning: The -noboundscheck switch is deprecated, use -boundscheck=off instead.
Compiling ../../.dub/packages/mir-glas-0.1.1/mir-glas/source/glas/precompiled/utility.d...
Warning: The -noboundscheck switch is deprecated, use -boundscheck=off instead.
Linking...
The determined compiler type "ldc" doesn't match the expected type "dmd". This will probably result in build errors.
Performing "release-nobounds" build using ldmd2 for x86_64.
mir-cpuid 0.4.2: building configuration "library"...
Compiling ../../.dub/packages/mir-cpuid-0.4.2/mir-cpuid/source/cpuid/amd.d...
Compiling ../../.dub/packages/mir-cpuid-0.4.2/mir-cpuid/source/cpuid/common.d...
Compiling ../../.dub/packages/mir-cpuid-0.4.2/mir-cpuid/source/cpuid/intel.d...
Compiling ../../.dub/packages/mir-cpuid-0.4.2/mir-cpuid/source/cpuid/unified.d...
Warning: The -noboundscheck switch is deprecated, use -boundscheck=off instead.
Warning: The -noboundscheck switch is deprecated, use -boundscheck=off instead.
Warning: The -noboundscheck switch is deprecated, use -boundscheck=off instead.
Warning: The -noboundscheck switch is deprecated, use -boundscheck=off instead.
Compiling ../../.dub/packages/mir-cpuid-0.4.2/mir-cpuid/source/cpuid/x86_any.d...
Warning: The -noboundscheck switch is deprecated, use -boundscheck=off instead.
Linking...
source/faster_lmm_d/optmatrix.d(6,8): Deprecation: module std.c.stdlib is deprecated - Import core.stdc.stdlib or core.sys.posix.stdlib instead
source/faster_lmm_d/kinship.d(7,8): Deprecation: module std.c.stdlib is deprecated - Import core.stdc.stdlib or core.sys.posix.stdlib instead
source/faster_lmm_d/opencl/add.d(8,8): Deprecation: module std.c.stdlib is deprecated - Import core.stdc.stdlib or core.sys.posix.stdlib instead
source/faster_lmm_d/opencl/add.d(9,8): Deprecation: module std.c.stdio is deprecated - Import core.stdc.stdio instead
blasint = int
source/faster_lmm_d/gwas.d(38,20): Deprecation: module std.parallelism is not accessible here, perhaps add 'static import std.parallelism;'
source/faster_lmm_d/lmm2.d(366,26): Deprecation: module std.math is not accessible here, perhaps add 'static import std.math;'
source/faster_lmm_d/lmm2.d(375,29): Deprecation: module std.math is not accessible here, perhaps add 'static import std.math;'
source/faster_lmm_d/lmm2.d(210,23): Deprecation: module std.math is not accessible here, perhaps add 'static import std.math;'
source/faster_lmm_d/lmm2.d(210,38): Deprecation: module std.math is not accessible here, perhaps add 'static import std.math;'
source/faster_lmm_d/lmm2.d(211,16): Deprecation: module std.math is not accessible here, perhaps add 'static import std.math;'
source/faster_lmm_d/lmm2.d(220,25): Deprecation: module std.math is not accessible here, perhaps add 'static import std.math;'
source/faster_lmm_d/lmm2.d(220,42): Deprecation: module std.math is not accessible here, perhaps add 'static import std.math;'
source/faster_lmm_d/lmm2.d(220,67): Deprecation: module std.math is not accessible here, perhaps add 'static import std.math;'
source/faster_lmm_d/lmm2.d(220,87): Deprecation: module std.math is not accessible here, perhaps add 'static import std.math;'
source/faster_lmm_d/lmm2.d(277,13): Deprecation: module std.math is not accessible here, perhaps add 'static import std.math;'
source/faster_lmm_d/optmatrix.d(196,24): Deprecation: module std.math is not accessible here, perhaps add 'static import std.math;'
source/faster_lmm_d/optmatrix.d(233,17): Deprecation: module std.math is not accessible here, perhaps add 'static import std.math;'
Linking...
/home/prasun/.dub/packages/mir-glas-0.1.1/mir-glas//libmir-glas.a(home.prasun..dub.packages.mir-glas-0.1.1.mir-glas.source.glas.precompiled.context.d.o): In function `glas_init':
../../.dub/packages/mir-glas-0.1.1/mir-glas/source/glas/precompiled/context.d:(.text.glas_init[glas_init]+0x17): undefined reference to `cpuid_init'
../../.dub/packages/mir-glas-0.1.1/mir-glas/source/glas/precompiled/context.d:(.text.glas_init[glas_init]+0x1c): undefined reference to `cpuid_dCache'
../../.dub/packages/mir-glas-0.1.1/mir-glas/source/glas/precompiled/context.d:(.text.glas_init[glas_init]+0x27): undefined reference to `cpuid_uCache'
collect2: error: ld returned 1 exit status
Error: /usr/bin/gcc failed with status: 1
ldmd2 failed with exit code 1.
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