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October 21, 2019 05:00
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| DEBUG conda.gateways.logging:set_verbosity(231): verbosity set to 2 | |
| DEBUG conda.core.solve:solve_final_state(222): solving prefix /home/pvh/anaconda3/envs/rgi | |
| specs_to_remove: frozenset() | |
| specs_to_add: frozenset({MatchSpec("rgi")}) | |
| prune: <auxlib._Null object at 0x7f64fad13ac8> | |
| Collecting package metadata (current_repodata.json): ...working... DEBUG conda.core.package_cache_data:_check_writable(259): package cache directory '/home/pvh/anaconda3/pkgs' writable: True | |
| DEBUG conda.core.package_cache_data:_check_writable(259): package cache directory '/home/pvh/anaconda3/pkgs' writable: True | |
| DEBUG conda.core.package_cache_data:_check_writable(259): package cache directory '/home/pvh/anaconda3/pkgs' writable: True | |
| DEBUG conda.core.package_cache_data:_check_writable(259): package cache directory '/home/pvh/anaconda3/pkgs' writable: True | |
| DEBUG conda.core.package_cache_data:_check_writable(259): package cache directory '/home/pvh/anaconda3/pkgs' writable: True | |
| DEBUG conda.core.subdir_data:_load(231): Local cache timed out for https://repo.anaconda.com/pkgs/main/noarch/current_repodata.json at /home/pvh/anaconda3/pkgs/cache/b35683e8.json | |
| DEBUG urllib3.util.retry:from_int(211): Converted retries value: 3 -> Retry(total=3, connect=None, read=None, redirect=None, status=None) | |
| DEBUG conda.core.subdir_data:_load(225): Using cached repodata for https://conda.anaconda.org/conda-forge/linux-64/current_repodata.json at /home/pvh/anaconda3/pkgs/cache/18414ddb.json. Timeout in 358 sec | |
| DEBUG conda.core.subdir_data:_load(225): Using cached repodata for https://conda.anaconda.org/bioconda/linux-64/current_repodata.json at /home/pvh/anaconda3/pkgs/cache/a0b50a38.json. Timeout in 364 sec | |
| DEBUG conda.core.subdir_data:_load(225): Using cached repodata for https://conda.anaconda.org/conda-forge/noarch/current_repodata.json at /home/pvh/anaconda3/pkgs/cache/62c98390.json. Timeout in 358 sec | |
| DEBUG conda.core.subdir_data:_load(231): Local cache timed out for https://repo.anaconda.com/pkgs/r/linux-64/current_repodata.json at /home/pvh/anaconda3/pkgs/cache/f1f1f480.json | |
| DEBUG urllib3.util.retry:from_int(211): Converted retries value: 3 -> Retry(total=3, connect=None, read=None, redirect=None, status=None) | |
| DEBUG conda.core.subdir_data:_load(231): Local cache timed out for https://repo.anaconda.com/pkgs/main/linux-64/current_repodata.json at /home/pvh/anaconda3/pkgs/cache/9e0f62c3.json | |
| DEBUG urllib3.util.retry:from_int(211): Converted retries value: 3 -> Retry(total=3, connect=None, read=None, redirect=None, status=None) | |
| DEBUG conda.core.subdir_data:_load(225): Using cached repodata for https://conda.anaconda.org/bioconda/noarch/current_repodata.json at /home/pvh/anaconda3/pkgs/cache/e599ec5e.json. Timeout in 360 sec | |
| DEBUG conda.core.subdir_data:_load(231): Local cache timed out for https://repo.anaconda.com/pkgs/r/noarch/current_repodata.json at /home/pvh/anaconda3/pkgs/cache/227b7582.json | |
| DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/a0b50a38.q | |
| DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/18414ddb.q | |
| DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/62c98390.q | |
| DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/e599ec5e.q | |
| DEBUG urllib3.util.retry:from_int(211): Converted retries value: 3 -> Retry(total=3, connect=None, read=None, redirect=None, status=None) | |
| DEBUG urllib3.connectionpool:_new_conn(813): Starting new HTTPS connection (1): repo.anaconda.com:443 | |
| DEBUG urllib3.connectionpool:_new_conn(813): Starting new HTTPS connection (1): repo.anaconda.com:443 | |
| DEBUG urllib3.connectionpool:_new_conn(813): Starting new HTTPS connection (1): repo.anaconda.com:443 | |
| DEBUG urllib3.connectionpool:_new_conn(813): Starting new HTTPS connection (1): repo.anaconda.com:443 | |
| DEBUG urllib3.connectionpool:_make_request(393): https://repo.anaconda.com:443 "GET /pkgs/r/noarch/current_repodata.json HTTP/1.1" 304 0 | |
| DEBUG conda.core.subdir_data:fetch_repodata_remote_request(477): | |
| >>GET /pkgs/r/noarch/current_repodata.json HTTPS | |
| > User-Agent: conda/4.7.11 requests/2.22.0 CPython/3.7.3 Linux/5.0.0-32-generic ubuntu/19.04 glibc/2.29 | |
| > Accept: */* | |
| > Accept-Encoding: gzip, deflate, compress, identity | |
| > Connection: keep-alive | |
| > Content-Type: application/json | |
| > If-Modified-Since: Tue, 15 Oct 2019 21:11:56 GMT | |
| > If-None-Match: W/"eac2788f37c5bba81de8169259ef4b19" | |
| <<HTTPS 304 Not Modified | |
| < Age: 459887 | |
| < Cache-Control: public, max-age=30 | |
| < CF-Cache-Status: HIT | |
| < CF-RAY: 5290a97ce9a2ac6a-JNB | |
| < Date: Mon, 21 Oct 2019 04:59:25 GMT | |
| < ETag: "eac2788f37c5bba81de8169259ef4b19" | |
| < Expect-CT: max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct" | |
| < Expires: Mon, 21 Oct 2019 04:59:55 GMT | |
| < Last-Modified: Tue, 15 Oct 2019 21:11:56 GMT | |
| < Server: cloudflare | |
| < Set-Cookie: __cfduid=deabd02a27c8eb51d251654dbe6d4ee191571633965; expires=Tue, 20-Oct-20 04:59:25 GMT; path=/; domain=.anaconda.com; HttpOnly; Secure | |
| < Vary: Accept-Encoding | |
| < x-amz-id-2: d8V2hI4VPErwlM+bLH5MkDJGZVOhvIjyhxi0OS0YE/waxpSiDaoGZEha3sHeqGR/tU7HllAm0sk= | |
| < x-amz-request-id: ACEB41ADA4E5819D | |
| < x-amz-version-id: ufXMwM9FqCmMWA8cA8Sat.aTsg7D_2m8 | |
| < Connection: keep-alive | |
| < Elapsed: 00:00.220119 | |
| DEBUG conda.core.subdir_data:_load(250): 304 NOT MODIFIED for 'https://repo.anaconda.com/pkgs/r/noarch/current_repodata.json'. Updating mtime and loading from disk | |
| DEBUG urllib3.connectionpool:_make_request(393): https://repo.anaconda.com:443 "GET /pkgs/main/noarch/current_repodata.json HTTP/1.1" 304 0 | |
| DEBUG conda.core.subdir_data:fetch_repodata_remote_request(477): | |
| >>GET /pkgs/main/noarch/current_repodata.json HTTPS | |
| > User-Agent: conda/4.7.11 requests/2.22.0 CPython/3.7.3 Linux/5.0.0-32-generic ubuntu/19.04 glibc/2.29 | |
| > Accept: */* | |
| > Accept-Encoding: gzip, deflate, compress, identity | |
| > Connection: keep-alive | |
| > Content-Type: application/json | |
| > If-Modified-Since: Wed, 16 Oct 2019 16:21:40 GMT | |
| > If-None-Match: W/"1c5bb8ec187e8386f2e44a82b15de321" | |
| <<HTTPS 304 Not Modified | |
| < Age: 390573 | |
| < Cache-Control: public, max-age=30 | |
| < CF-Cache-Status: HIT | |
| < CF-RAY: 5290a97ce99fac6a-JNB | |
| < Date: Mon, 21 Oct 2019 04:59:25 GMT | |
| < ETag: "1c5bb8ec187e8386f2e44a82b15de321" | |
| < Expect-CT: max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct" | |
| < Expires: Mon, 21 Oct 2019 04:59:55 GMT | |
| < Last-Modified: Wed, 16 Oct 2019 16:21:40 GMT | |
| < Server: cloudflare | |
| < Set-Cookie: __cfduid=deabd02a27c8eb51d251654dbe6d4ee191571633965; expires=Tue, 20-Oct-20 04:59:25 GMT; path=/; domain=.anaconda.com; HttpOnly; Secure | |
| < Vary: Accept-Encoding | |
| < x-amz-id-2: XQ1l+gZppCk7Ma9zR3ADlP6/9dy+skbuVTF9CL0+OZQtLXlAPihzZXNdEfzDaDzNDwlseIIBwJk= | |
| < x-amz-request-id: 36F771B9BE797D25 | |
| < x-amz-version-id: MZoNyWnarmnWll1_FVo_aSLANqbcjlwS | |
| < Connection: keep-alive | |
| < Elapsed: 00:00.240793 | |
| DEBUG conda.core.subdir_data:_load(250): 304 NOT MODIFIED for 'https://repo.anaconda.com/pkgs/main/noarch/current_repodata.json'. Updating mtime and loading from disk | |
| DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/b35683e8.q | |
| DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/227b7582.q | |
| DEBUG urllib3.connectionpool:_make_request(393): https://repo.anaconda.com:443 "GET /pkgs/r/linux-64/current_repodata.json HTTP/1.1" 304 0 | |
| DEBUG conda.core.subdir_data:fetch_repodata_remote_request(477): | |
| >>GET /pkgs/r/linux-64/current_repodata.json HTTPS | |
| > User-Agent: conda/4.7.11 requests/2.22.0 CPython/3.7.3 Linux/5.0.0-32-generic ubuntu/19.04 glibc/2.29 | |
| > Accept: */* | |
| > Accept-Encoding: gzip, deflate, compress, identity | |
| > Connection: keep-alive | |
| > Content-Type: application/json | |
| > If-Modified-Since: Tue, 15 Oct 2019 16:29:41 GMT | |
| > If-None-Match: W/"5a82f4b9cd3a0c7780e4e50ce2fadace" | |
| <<HTTPS 304 Not Modified | |
| < Age: 475988 | |
| < Cache-Control: public, max-age=30 | |
| < CF-Cache-Status: HIT | |
| < CF-RAY: 5290a97cfd8aac8e-JNB | |
| < Date: Mon, 21 Oct 2019 04:59:25 GMT | |
| < ETag: "5a82f4b9cd3a0c7780e4e50ce2fadace" | |
| < Expect-CT: max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct" | |
| < Expires: Mon, 21 Oct 2019 04:59:55 GMT | |
| < Last-Modified: Tue, 15 Oct 2019 16:29:41 GMT | |
| < Server: cloudflare | |
| < Set-Cookie: __cfduid=d44643733ebffc1e241766690862570481571633965; expires=Tue, 20-Oct-20 04:59:25 GMT; path=/; domain=.anaconda.com; HttpOnly; Secure | |
| < Vary: Accept-Encoding | |
| < x-amz-id-2: EFXztE8n3gFta+CJt7aCsQo8TVI0so6UF4puqd/jC7Y9IHsQOCWfmPuEsyXoClCTDlmEMk8Alu4= | |
| < x-amz-request-id: 27347CDE22C711D2 | |
| < x-amz-version-id: 51av7vyf.venqKNQMrLpKIE4t875IBOn | |
| < Connection: keep-alive | |
| < Elapsed: 00:00.251108 | |
| DEBUG conda.core.subdir_data:_load(250): 304 NOT MODIFIED for 'https://repo.anaconda.com/pkgs/r/linux-64/current_repodata.json'. Updating mtime and loading from disk | |
| DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/f1f1f480.q | |
| DEBUG urllib3.connectionpool:_make_request(393): https://repo.anaconda.com:443 "GET /pkgs/main/linux-64/current_repodata.json HTTP/1.1" 304 0 | |
| DEBUG conda.core.subdir_data:fetch_repodata_remote_request(477): | |
| >>GET /pkgs/main/linux-64/current_repodata.json HTTPS | |
| > User-Agent: conda/4.7.11 requests/2.22.0 CPython/3.7.3 Linux/5.0.0-32-generic ubuntu/19.04 glibc/2.29 | |
| > Accept: */* | |
| > Accept-Encoding: gzip, deflate, compress, identity | |
| > Connection: keep-alive | |
| > Content-Type: application/json | |
| > If-Modified-Since: Wed, 16 Oct 2019 18:02:39 GMT | |
| > If-None-Match: W/"bbd049b8a2946a4ff6155f855313d6d5" | |
| <<HTTPS 304 Not Modified | |
| < Age: 378874 | |
| < Cache-Control: public, max-age=30 | |
| < CF-Cache-Status: HIT | |
| < CF-RAY: 5290a97d8bf0ac34-JNB | |
| < Date: Mon, 21 Oct 2019 04:59:25 GMT | |
| < ETag: "bbd049b8a2946a4ff6155f855313d6d5" | |
| < Expect-CT: max-age=604800, report-uri="https://report-uri.cloudflare.com/cdn-cgi/beacon/expect-ct" | |
| < Expires: Mon, 21 Oct 2019 04:59:55 GMT | |
| < Last-Modified: Wed, 16 Oct 2019 18:02:39 GMT | |
| < Server: cloudflare | |
| < Set-Cookie: __cfduid=dcd0608327ad1a73fab047ce53ecffe0d1571633965; expires=Tue, 20-Oct-20 04:59:25 GMT; path=/; domain=.anaconda.com; HttpOnly; Secure | |
| < Vary: Accept-Encoding | |
| < x-amz-id-2: /jLP8awPOJXyWwdZGJEzhb0B/byqqMTxkW3/UA8rbNMI87p9N5ABn8Cxwc/3XGYl9TaYTBvcTzk= | |
| < x-amz-request-id: 03887800D2F59B61 | |
| < x-amz-version-id: n6j5dFv94vHlEBY7GTyzXZB8NCfIgPO_ | |
| < Connection: keep-alive | |
| < Elapsed: 00:00.345000 | |
| DEBUG conda.core.subdir_data:_load(250): 304 NOT MODIFIED for 'https://repo.anaconda.com/pkgs/main/linux-64/current_repodata.json'. Updating mtime and loading from disk | |
| DEBUG conda.core.subdir_data:_read_pickled(314): found pickle file /home/pvh/anaconda3/pkgs/cache/9e0f62c3.q | |
| done | |
| Solving environment: ...working... DEBUG conda.resolve:get_reduced_index(539): Retrieving packages for: | |
| - rgi | |
| DEBUG conda.resolve:filter_group(600): rgi: pruned from 2 -> 1 | |
| DEBUG conda.resolve:filter_group(600): python: pruned from 43 -> 35 | |
| DEBUG conda.resolve:filter_group(600): pip: pruned from 9 -> 6 | |
| DEBUG conda.resolve:filter_group(600): python: pruned from 35 -> 31 | |
| DEBUG conda.resolve:filter_group(600): readline: pruned from 10 -> 9 | |
| DEBUG conda.resolve:filter_group(600): sqlite: pruned from 8 -> 5 | |
| DEBUG conda.resolve:filter_group(600): zlib: pruned from 14 -> 11 | |
| DEBUG conda.resolve:filter_group(600): setuptools: pruned from 6 -> 4 | |
| DEBUG conda.resolve:filter_group(600): certifi: pruned from 10 -> 6 | |
| DEBUG conda.resolve:filter_group(600): wheel: pruned from 6 -> 4 | |
| DEBUG conda.resolve:filter_group(600): biopython: pruned from 35 -> 22 | |
| DEBUG conda.resolve:filter_group(600): numpy: pruned from 190 -> 111 | |
| DEBUG conda.resolve:filter_group(600): blast: pruned from 20 -> 12 | |
| DEBUG conda.resolve:filter_group(600): six: pruned from 20 -> 11 | |
| DEBUG conda.resolve:filter_group(600): argparse: pruned from 5 -> 2 | |
| DEBUG conda.core.solve:_add_specs(616): specs_map with targets: OrderedDict() | |
| DEBUG conda.resolve:bad_installed(1066): Checking if the current environment is consistent | |
| DEBUG conda.core.solve:_find_inconsistent_packages(483): inconsistent precs: None | |
| DEBUG conda.resolve:_get_sat_solver_cls(52): Using SAT solver interface 'pycosat'. | |
| DEBUG conda.resolve:gen_clauses(878): gen_clauses returning with clause count: 21021 | |
| DEBUG conda.resolve:generate_spec_constraints(886): generate_spec_constraints returning with clause count: 21021 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 21022 | |
| DEBUG conda.core.solve:_run_sat(800): final specs to add: | |
| - rgi | |
| DEBUG conda.resolve:solve(1198): Solving for: | |
| - 0: rgi target=None optional=False | |
| DEBUG conda.resolve:solve(1208): Solve: Getting reduced index of compliant packages | |
| DEBUG conda.resolve:solve(1235): Solve: determining satisfiability | |
| DEBUG conda.resolve:gen_clauses(878): gen_clauses returning with clause count: 7740 | |
| DEBUG conda.resolve:generate_spec_constraints(886): generate_spec_constraints returning with clause count: 7740 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 7741 | |
| DEBUG conda.resolve:solve(1286): Requested specs: | |
| - rgi | |
| DEBUG conda.resolve:solve(1287): Optional specs: | |
| DEBUG conda.resolve:solve(1288): All other specs: | |
| - _libgcc_mutex | |
| - argparse | |
| - biopython | |
| - blas | |
| - blast | |
| - blis | |
| - boost | |
| - boost-cpp | |
| - bzip2 | |
| - ca-certificates | |
| - certifi | |
| - curl | |
| - entrez-direct | |
| - expat | |
| - freetype | |
| - gmp | |
| - gnutls | |
| - icu | |
| - intel-openmp | |
| - jpeg | |
| - krb5 | |
| - libblas | |
| - libboost | |
| - libcblas | |
| - libcurl | |
| - libedit | |
| - libffi | |
| - libgcc | |
| - libgcc-ng | |
| - libgfortran | |
| - libgfortran-ng | |
| - liblapack | |
| - liblapacke | |
| - libopenblas | |
| - libpng | |
| - libssh2 | |
| - libstdcxx-ng | |
| - libtiff | |
| - lz4-c | |
| - mkl | |
| - mkl-service | |
| - mkl_fft | |
| - mkl_random | |
| - mmtf-python | |
| - msgpack-python | |
| - ncurses | |
| - nettle | |
| - nomkl | |
| - numpy | |
| - numpy-base | |
| - olefile | |
| - openblas | |
| - openblas-devel | |
| - openssl | |
| - pcre | |
| - perl | |
| - perl-app-cpanminus | |
| - perl-archive-tar | |
| - perl-base | |
| - perl-business-isbn | |
| - perl-business-isbn-data | |
| - perl-carp | |
| - perl-common-sense | |
| - perl-compress-raw-bzip2 | |
| - perl-compress-raw-zlib | |
| - perl-constant | |
| - perl-data-dumper | |
| - perl-digest-hmac | |
| - perl-digest-md5 | |
| - perl-encode | |
| - perl-encode-locale | |
| - perl-exporter | |
| - perl-exporter-tiny | |
| - perl-extutils-makemaker | |
| - perl-file-listing | |
| - perl-file-path | |
| - perl-file-temp | |
| - perl-html-parser | |
| - perl-html-tagset | |
| - perl-html-tree | |
| - perl-http-cookies | |
| - perl-http-daemon | |
| - perl-http-date | |
| - perl-http-message | |
| - perl-http-negotiate | |
| - perl-io-compress | |
| - perl-io-html | |
| - perl-io-socket-ssl | |
| - perl-io-zlib | |
| - perl-json | |
| - perl-json-xs | |
| - perl-libwww-perl | |
| - perl-list-moreutils | |
| - perl-list-moreutils-xs | |
| - perl-lwp-mediatypes | |
| - perl-lwp-protocol-https | |
| - perl-mime-base64 | |
| - perl-mozilla-ca | |
| - perl-net-http | |
| - perl-net-ssleay | |
| - perl-ntlm | |
| - perl-parent | |
| - perl-pathtools | |
| - perl-scalar-list-utils | |
| - perl-socket | |
| - perl-storable | |
| - perl-test-requiresinternet | |
| - perl-threaded | |
| - perl-time-local | |
| - perl-try-tiny | |
| - perl-types-serialiser | |
| - perl-uri | |
| - perl-www-robotrules | |
| - perl-xml-namespacesupport | |
| - perl-xml-parser | |
| - perl-xml-sax | |
| - perl-xml-sax-base | |
| - perl-xml-sax-expat | |
| - perl-xml-simple | |
| - perl-xsloader | |
| - pillow | |
| - pip | |
| - prodigal | |
| - py-boost | |
| - python | |
| - readline | |
| - reportlab | |
| - setuptools | |
| - six | |
| - sqlite | |
| - tk | |
| - wheel | |
| - xz | |
| - zlib | |
| - zstd | |
| DEBUG conda.resolve:solve(1289): missing specs: | |
| - _libgcc_mutex | |
| - argparse | |
| - biopython | |
| - blas | |
| - blast | |
| - blis | |
| - boost | |
| - boost-cpp | |
| - bzip2 | |
| - ca-certificates | |
| - certifi | |
| - curl | |
| - entrez-direct | |
| - expat | |
| - freetype | |
| - gmp | |
| - gnutls | |
| - icu | |
| - intel-openmp | |
| - jpeg | |
| - krb5 | |
| - libblas | |
| - libboost | |
| - libcblas | |
| - libcurl | |
| - libedit | |
| - libffi | |
| - libgcc | |
| - libgcc-ng | |
| - libgfortran | |
| - libgfortran-ng | |
| - liblapack | |
| - liblapacke | |
| - libopenblas | |
| - libpng | |
| - libssh2 | |
| - libstdcxx-ng | |
| - libtiff | |
| - lz4-c | |
| - mkl | |
| - mkl-service | |
| - mkl_fft | |
| - mkl_random | |
| - mmtf-python | |
| - msgpack-python | |
| - ncurses | |
| - nettle | |
| - nomkl | |
| - numpy | |
| - numpy-base | |
| - olefile | |
| - openblas | |
| - openblas-devel | |
| - openssl | |
| - pcre | |
| - perl | |
| - perl-app-cpanminus | |
| - perl-archive-tar | |
| - perl-base | |
| - perl-business-isbn | |
| - perl-business-isbn-data | |
| - perl-carp | |
| - perl-common-sense | |
| - perl-compress-raw-bzip2 | |
| - perl-compress-raw-zlib | |
| - perl-constant | |
| - perl-data-dumper | |
| - perl-digest-hmac | |
| - perl-digest-md5 | |
| - perl-encode | |
| - perl-encode-locale | |
| - perl-exporter | |
| - perl-exporter-tiny | |
| - perl-extutils-makemaker | |
| - perl-file-listing | |
| - perl-file-path | |
| - perl-file-temp | |
| - perl-html-parser | |
| - perl-html-tagset | |
| - perl-html-tree | |
| - perl-http-cookies | |
| - perl-http-daemon | |
| - perl-http-date | |
| - perl-http-message | |
| - perl-http-negotiate | |
| - perl-io-compress | |
| - perl-io-html | |
| - perl-io-socket-ssl | |
| - perl-io-zlib | |
| - perl-json | |
| - perl-json-xs | |
| - perl-libwww-perl | |
| - perl-list-moreutils | |
| - perl-list-moreutils-xs | |
| - perl-lwp-mediatypes | |
| - perl-lwp-protocol-https | |
| - perl-mime-base64 | |
| - perl-mozilla-ca | |
| - perl-net-http | |
| - perl-net-ssleay | |
| - perl-ntlm | |
| - perl-parent | |
| - perl-pathtools | |
| - perl-scalar-list-utils | |
| - perl-socket | |
| - perl-storable | |
| - perl-test-requiresinternet | |
| - perl-threaded | |
| - perl-time-local | |
| - perl-try-tiny | |
| - perl-types-serialiser | |
| - perl-uri | |
| - perl-www-robotrules | |
| - perl-xml-namespacesupport | |
| - perl-xml-parser | |
| - perl-xml-sax | |
| - perl-xml-sax-base | |
| - perl-xml-sax-expat | |
| - perl-xml-simple | |
| - perl-xsloader | |
| - pillow | |
| - pip | |
| - prodigal | |
| - py-boost | |
| - python | |
| - readline | |
| - reportlab | |
| - setuptools | |
| - six | |
| - sqlite | |
| - tk | |
| - wheel | |
| - xz | |
| - zlib | |
| - zstd | |
| DEBUG conda.resolve:solve(1292): Solve: minimize removed packages | |
| DEBUG conda.resolve:solve(1299): Solve: maximize versions of requested packages | |
| DEBUG conda.common.logic:minimize(794): Empty objective, trivial solution | |
| DEBUG conda.common.logic:minimize(794): Empty objective, trivial solution | |
| DEBUG conda.resolve:solve(1303): Initial package channel/version metric: 0/0 | |
| DEBUG conda.resolve:solve(1306): Solve: minimize track_feature count | |
| DEBUG conda.resolve:generate_feature_count(894): generate_feature_count returning with clause count: 7822 | |
| DEBUG conda.common.logic:minimize(788): Clauses added, recomputing solution | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 7822 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 7827 | |
| DEBUG conda.common.logic:minimize(874): Final sum objective: 0 | |
| DEBUG conda.resolve:solve(1309): Track feature count: 0 | |
| DEBUG conda.common.logic:minimize(788): Clauses added, recomputing solution | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 7896 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 7919 | |
| DEBUG conda.common.logic:minimize(874): Final sum objective: 0 | |
| DEBUG conda.resolve:solve(1320): Package misfeature count: 0 | |
| DEBUG conda.resolve:solve(1323): Solve: maximize build numbers of requested packages | |
| DEBUG conda.common.logic:minimize(794): Empty objective, trivial solution | |
| DEBUG conda.resolve:solve(1325): Initial package build metric: 0 | |
| DEBUG conda.resolve:solve(1328): Solve: prefer arch over noarch for requested packages | |
| DEBUG conda.common.logic:minimize(794): Empty objective, trivial solution | |
| DEBUG conda.resolve:solve(1330): Noarch metric: 0 | |
| DEBUG conda.resolve:solve(1334): Solve: minimize number of optional installations | |
| DEBUG conda.common.logic:minimize(794): Empty objective, trivial solution | |
| DEBUG conda.resolve:solve(1337): Optional package install metric: 0 | |
| DEBUG conda.resolve:solve(1340): Solve: minimize number of necessary upgrades | |
| DEBUG conda.common.logic:minimize(794): Empty objective, trivial solution | |
| DEBUG conda.resolve:solve(1343): Dependency update count: 0 | |
| DEBUG conda.resolve:solve(1346): Solve: maximize versions and builds of indirect dependencies. Prefer arch over noarch where equivalent. | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 8044 | |
| DEBUG conda.common.logic:minimize(874): Final peak objective: 0 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 8378 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 8132 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 8172 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 8204 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 8247 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 8204 | |
| DEBUG conda.common.logic:minimize(874): Final peak objective: 2 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 15419 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 12474 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 10739 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 9849 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 9461 | |
| DEBUG conda.common.logic:minimize(874): Final sum objective: 2 | |
| DEBUG conda.common.logic:minimize(886): New peak objective: 2 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 9940 | |
| DEBUG conda.common.logic:minimize(874): Final peak objective: 0 | |
| DEBUG conda.common.logic:minimize(794): Empty objective, trivial solution | |
| DEBUG conda.resolve:solve(1354): Additional package channel/version/build/noarch metrics: 0/2/0/0 | |
| DEBUG conda.resolve:solve(1357): Solve: prune unnecessary packages | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 19969 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 15857 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 18514 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 19402 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 19738 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 19878 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 20094 | |
| DEBUG conda.common.logic:minimize(874): Final sum objective: 32 | |
| DEBUG conda.common.logic:minimize(886): New peak objective: 1 | |
| DEBUG conda.resolve:solve(1360): Weak dependency count: 32 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 20095 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 20271 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 20133 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 20100 | |
| DEBUG conda.common.logic:minimize(874): Final peak objective: 2 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 24433 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 22674 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 23573 | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 24042 | |
| DEBUG conda.common.logic:minimize(874): Final sum objective: 8 | |
| DEBUG conda.common.logic:minimize(886): New peak objective: 2 | |
| DEBUG conda.resolve:solve(1366): Timestamp metric: 8 | |
| DEBUG conda.resolve:solve(1368): Looking for alternate solutions | |
| DEBUG conda.common.logic:_run_sat(717): Invoking SAT with clause count: 24043 | |
| done | |
| DEBUG conda.core.solve:solve_final_state(308): solved prefix /home/pvh/anaconda3/envs/rgi | |
| solved_linked_dists: | |
| defaults::_libgcc_mutex-0.1-main | |
| conda-forge::ca-certificates-2019.9.11-hecc5488_0 | |
| conda-forge::libgfortran-ng-7.3.0-hdf63c60_2 | |
| defaults::libstdcxx-ng-9.1.0-hdf63c60_0 | |
| bioconda::prodigal-2.6.3-1 | |
| defaults::libgcc-ng-9.1.0-hdf63c60_0 | |
| conda-forge::bzip2-1.0.8-h516909a_1 | |
| conda-forge::icu-64.2-he1b5a44_1 | |
| conda-forge::libffi-3.2.1-he1b5a44_1006 | |
| conda-forge::libopenblas-0.3.7-h6e990d7_2 | |
| conda-forge::ncurses-6.1-hf484d3e_1002 | |
| conda-forge::openssl-1.1.1c-h516909a_0 | |
| conda-forge::xz-5.2.4-h14c3975_1001 | |
| conda-forge::zlib-1.2.11-h516909a_1006 | |
| conda-forge::boost-cpp-1.70.0-h8e57a91_2 | |
| conda-forge::libblas-3.8.0-14_openblas | |
| conda-forge::readline-8.0-hf8c457e_0 | |
| conda-forge::tk-8.6.9-hed695b0_1003 | |
| conda-forge::libcblas-3.8.0-14_openblas | |
| conda-forge::liblapack-3.8.0-14_openblas | |
| conda-forge::sqlite-3.30.1-hcee41ef_0 | |
| conda-forge::python-3.6.7-h357f687_1005 | |
| bioconda::argparse-1.4.0-py36_0 | |
| conda-forge::certifi-2019.9.11-py36_0 | |
| conda-forge::numpy-1.17.2-py36h95a1406_0 | |
| conda-forge::six-1.12.0-py36_1000 | |
| conda-forge::biopython-1.74-py36h516909a_0 | |
| conda-forge::boost-1.70.0-py36h9de70de_1 | |
| conda-forge::setuptools-41.4.0-py36_0 | |
| bioconda::blast-2.5.0-hc0b0e79_3 | |
| conda-forge::wheel-0.33.6-py36_0 | |
| conda-forge::pip-19.3.1-py36_0 | |
| bioconda::rgi-3.1.0-py_0 | |
| ==> WARNING: A newer version of conda exists. <== | |
| current version: 4.7.11 | |
| latest version: 4.7.12 | |
| Please update conda by running | |
| $ conda update -n base conda | |
| INFO conda.core.link:__init__(169): initializing UnlinkLinkTransaction with | |
| target_prefix: /home/pvh/anaconda3/envs/rgi | |
| unlink_precs: | |
| link_precs: | |
| defaults::_libgcc_mutex-0.1-main | |
| conda-forge::ca-certificates-2019.9.11-hecc5488_0 | |
| conda-forge::libgfortran-ng-7.3.0-hdf63c60_2 | |
| defaults::libstdcxx-ng-9.1.0-hdf63c60_0 | |
| bioconda::prodigal-2.6.3-1 | |
| defaults::libgcc-ng-9.1.0-hdf63c60_0 | |
| conda-forge::bzip2-1.0.8-h516909a_1 | |
| conda-forge::icu-64.2-he1b5a44_1 | |
| conda-forge::libffi-3.2.1-he1b5a44_1006 | |
| conda-forge::libopenblas-0.3.7-h6e990d7_2 | |
| conda-forge::ncurses-6.1-hf484d3e_1002 | |
| conda-forge::openssl-1.1.1c-h516909a_0 | |
| conda-forge::xz-5.2.4-h14c3975_1001 | |
| conda-forge::zlib-1.2.11-h516909a_1006 | |
| conda-forge::boost-cpp-1.70.0-h8e57a91_2 | |
| conda-forge::libblas-3.8.0-14_openblas | |
| conda-forge::readline-8.0-hf8c457e_0 | |
| conda-forge::tk-8.6.9-hed695b0_1003 | |
| conda-forge::libcblas-3.8.0-14_openblas | |
| conda-forge::liblapack-3.8.0-14_openblas | |
| conda-forge::sqlite-3.30.1-hcee41ef_0 | |
| conda-forge::python-3.6.7-h357f687_1005 | |
| bioconda::argparse-1.4.0-py36_0 | |
| conda-forge::certifi-2019.9.11-py36_0 | |
| conda-forge::numpy-1.17.2-py36h95a1406_0 | |
| conda-forge::six-1.12.0-py36_1000 | |
| conda-forge::biopython-1.74-py36h516909a_0 | |
| conda-forge::boost-1.70.0-py36h9de70de_1 | |
| conda-forge::setuptools-41.4.0-py36_0 | |
| bioconda::blast-2.5.0-hc0b0e79_3 | |
| conda-forge::wheel-0.33.6-py36_0 | |
| conda-forge::pip-19.3.1-py36_0 | |
| bioconda::rgi-3.1.0-py_0 | |
| DEBUG conda.core.package_cache_data:__init__(599): instantiating ProgressiveFetchExtract with | |
| conda-forge::liblapack-3.8.0-14_openblas | |
| conda-forge::openssl-1.1.1c-h516909a_0 | |
| conda-forge::pip-19.3.1-py36_0 | |
| conda-forge::libblas-3.8.0-14_openblas | |
| conda-forge::libgfortran-ng-7.3.0-hdf63c60_2 | |
| conda-forge::sqlite-3.30.1-hcee41ef_0 | |
| conda-forge::boost-1.70.0-py36h9de70de_1 | |
| conda-forge::boost-cpp-1.70.0-h8e57a91_2 | |
| defaults::libgcc-ng-9.1.0-hdf63c60_0 | |
| conda-forge::xz-5.2.4-h14c3975_1001 | |
| conda-forge::libffi-3.2.1-he1b5a44_1006 | |
| conda-forge::six-1.12.0-py36_1000 | |
| conda-forge::python-3.6.7-h357f687_1005 | |
| bioconda::prodigal-2.6.3-1 | |
| bioconda::argparse-1.4.0-py36_0 | |
| conda-forge::wheel-0.33.6-py36_0 | |
| conda-forge::libcblas-3.8.0-14_openblas | |
| conda-forge::biopython-1.74-py36h516909a_0 | |
| defaults::libstdcxx-ng-9.1.0-hdf63c60_0 | |
| conda-forge::libopenblas-0.3.7-h6e990d7_2 | |
| conda-forge::readline-8.0-hf8c457e_0 | |
| bioconda::blast-2.5.0-hc0b0e79_3 | |
| conda-forge::numpy-1.17.2-py36h95a1406_0 | |
| bioconda::rgi-3.1.0-py_0 | |
| conda-forge::ncurses-6.1-hf484d3e_1002 | |
| defaults::_libgcc_mutex-0.1-main | |
| conda-forge::icu-64.2-he1b5a44_1 | |
| conda-forge::certifi-2019.9.11-py36_0 | |
| conda-forge::setuptools-41.4.0-py36_0 | |
| conda-forge::tk-8.6.9-hed695b0_1003 | |
| conda-forge::bzip2-1.0.8-h516909a_1 | |
| conda-forge::zlib-1.2.11-h516909a_1006 | |
| conda-forge::ca-certificates-2019.9.11-hecc5488_0 | |
| DEBUG conda.core.package_cache_data:_check_writable(259): package cache directory '/home/pvh/anaconda3/pkgs' writable: True | |
| DryRunExit: Dry run. Exiting. | |
| ## Package Plan ## | |
| environment location: /home/pvh/anaconda3/envs/rgi | |
| added / updated specs: | |
| - rgi | |
| The following packages will be downloaded: | |
| package | build | |
| ---------------------------|----------------- | |
| argparse-1.4.0 | py36_0 46 KB bioconda | |
| biopython-1.74 | py36h516909a_0 2.5 MB conda-forge | |
| boost-1.70.0 | py36h9de70de_1 337 KB conda-forge | |
| libblas-3.8.0 | 14_openblas 10 KB conda-forge | |
| libcblas-3.8.0 | 14_openblas 10 KB conda-forge | |
| liblapack-3.8.0 | 14_openblas 10 KB conda-forge | |
| libopenblas-0.3.7 | h6e990d7_2 7.6 MB conda-forge | |
| pip-19.3.1 | py36_0 1.9 MB conda-forge | |
| prodigal-2.6.3 | 1 904 KB bioconda | |
| rgi-3.1.0 | py_0 4.6 MB bioconda | |
| ------------------------------------------------------------ | |
| Total: 18.0 MB | |
| The following NEW packages will be INSTALLED: | |
| _libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main | |
| argparse bioconda/linux-64::argparse-1.4.0-py36_0 | |
| biopython conda-forge/linux-64::biopython-1.74-py36h516909a_0 | |
| blast bioconda/linux-64::blast-2.5.0-hc0b0e79_3 | |
| boost conda-forge/linux-64::boost-1.70.0-py36h9de70de_1 | |
| boost-cpp conda-forge/linux-64::boost-cpp-1.70.0-h8e57a91_2 | |
| bzip2 conda-forge/linux-64::bzip2-1.0.8-h516909a_1 | |
| ca-certificates conda-forge/linux-64::ca-certificates-2019.9.11-hecc5488_0 | |
| certifi conda-forge/linux-64::certifi-2019.9.11-py36_0 | |
| icu conda-forge/linux-64::icu-64.2-he1b5a44_1 | |
| libblas conda-forge/linux-64::libblas-3.8.0-14_openblas | |
| libcblas conda-forge/linux-64::libcblas-3.8.0-14_openblas | |
| libffi conda-forge/linux-64::libffi-3.2.1-he1b5a44_1006 | |
| libgcc-ng pkgs/main/linux-64::libgcc-ng-9.1.0-hdf63c60_0 | |
| libgfortran-ng conda-forge/linux-64::libgfortran-ng-7.3.0-hdf63c60_2 | |
| liblapack conda-forge/linux-64::liblapack-3.8.0-14_openblas | |
| libopenblas conda-forge/linux-64::libopenblas-0.3.7-h6e990d7_2 | |
| libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-9.1.0-hdf63c60_0 | |
| ncurses conda-forge/linux-64::ncurses-6.1-hf484d3e_1002 | |
| numpy conda-forge/linux-64::numpy-1.17.2-py36h95a1406_0 | |
| openssl conda-forge/linux-64::openssl-1.1.1c-h516909a_0 | |
| pip conda-forge/linux-64::pip-19.3.1-py36_0 | |
| prodigal bioconda/linux-64::prodigal-2.6.3-1 | |
| python conda-forge/linux-64::python-3.6.7-h357f687_1005 | |
| readline conda-forge/linux-64::readline-8.0-hf8c457e_0 | |
| rgi bioconda/noarch::rgi-3.1.0-py_0 | |
| setuptools conda-forge/linux-64::setuptools-41.4.0-py36_0 | |
| six conda-forge/linux-64::six-1.12.0-py36_1000 | |
| sqlite conda-forge/linux-64::sqlite-3.30.1-hcee41ef_0 | |
| tk conda-forge/linux-64::tk-8.6.9-hed695b0_1003 | |
| wheel conda-forge/linux-64::wheel-0.33.6-py36_0 | |
| xz conda-forge/linux-64::xz-5.2.4-h14c3975_1001 | |
| zlib conda-forge/linux-64::zlib-1.2.11-h516909a_1006 | |
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