# # This file is automatically generated with # the System Biology Format Converter (http://sbfc.sourceforge.net/) # from an SBML file. # # # Model name = Petri net - feinberg1 # # # some function definitions that are allowed in SBML but not valid in xpp ceil(x)=flr(1+x) @delay=50 # Compartment: id = reactionNetworkSystem_0c, name = ReactionNetworkSystem, constant par reactionN=1.0 # Compartment: id = pot_petriNet_1c, name = pot, constant par pot_petri=1.0 # Reaction: id = a_BB_13r, name = A_BB # Local Parameter: id = K, name = K par K=0.0039 a_BB_13r=pot_petri*K*a_7s # Reaction: id = bB_A_18r, name = BB_A # Local Parameter: id = K, name = K par K_1=0.0038 bB_A_18r=pot_petri*K_1*b_8s^(2) # Reaction: id = aC_D_23r, name = AC_D # Local Parameter: id = K, name = K par K_1_2=0.0037 aC_D_23r=pot_petri*K_1_2*a_7s*c_9s # Reaction: id = d_AC_29r, name = D_AC # Local Parameter: id = K, name = K par K_1_2_3=0.0036 d_AC_29r=pot_petri*K_1_2_3*d_10s # Reaction: id = d_BE_35r, name = D_BE # Local Parameter: id = K, name = K par K_1_2_3_4=0.0035 d_BE_35r=pot_petri*K_1_2_3_4*d_10s # Reaction: id = bE_AC_41r, name = BE_AC # Local Parameter: id = K, name = K par K_1_2_3_5=0.0034 bE_AC_41r=pot_petri*K_1_2_3_5*b_8s*e_11s # Species: id = a_7s, name = A, affected by kineticLaw init a_7s=140.0 da_7s/dt=(1/(pot_petri))*((-1.0 * a_BB_13r) + ( 1.0 * bB_A_18r) + (-1.0 * aC_D_23r) + ( 1.0 * d_AC_29r) + ( 1.0 * bE_AC_41r)) # Species: id = b_8s, name = B, affected by kineticLaw init b_8s=180.0 db_8s/dt=(1/(pot_petri))*(( 2.0 * a_BB_13r) + (-2.0 * bB_A_18r) + ( 1.0 * d_BE_35r) + (-1.0 * bE_AC_41r)) # Species: id = c_9s, name = C, affected by kineticLaw init c_9s=200.0 dc_9s/dt=(1/(pot_petri))*((-1.0 * aC_D_23r) + ( 1.0 * d_AC_29r) + ( 1.0 * bE_AC_41r)) # Species: id = d_10s, name = D, affected by kineticLaw init d_10s=25.0 dd_10s/dt=(1/(pot_petri))*(( 1.0 * aC_D_23r) + (-1.0 * d_AC_29r) + (-1.0 * d_BE_35r)) # Species: id = e_11s, name = E, affected by kineticLaw init e_11s=80.0 de_11s/dt=(1/(pot_petri))*(( 1.0 * d_BE_35r) + (-1.0 * bE_AC_41r)) @ meth=cvode, tol=1e-6, atol=1e-8 # @ maxstor=1e6 @ bound=40000, total=200 done