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package org.nrg.xnat.bootstrap.configuration;

import org.springframework.context.annotation.Bean;
import org.springframework.context.annotation.Configuration;

import java.util.Arrays;
import java.util.List;

@Configuration
public class ConfigServiceConfiguration {

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<?xml version="1.0" encoding="UTF-8"?>
<beans xmlns="http://www.springframework.org/schema/beans" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
       xmlns:context="http://www.springframework.org/schema/context"
       xmlns:util="http://www.springframework.org/schema/util"
       xsi:schemaLocation="http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans.xsd http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context.xsd http://www.springframework.org/schema/util http://www.springframework.org/schema/util/spring-util.xsd">

    <context:property-placeholder location="WEB-INF/conf/services.properties,WEB-INF/conf/services-custom.properties" ignore-resource-not-found="true" ignore-unresolvable="true"/>

    <bean name="projectIdent1" class="org.nrg.dcm.id.FixedDicomProjectIdentifier">
        <constructor-arg value="project1"/>

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1:36:15 PM 0 Grape dependency jars added
           @Grab(group = 'org.codehaus.groovy.modules.http-builder', module = 'http-builder', version = '0.7.2'): 0 jars
           org.codehaus.groovy.control.MultipleCompilationErrorsException: startup failed:
           General error during conversion: No such property: canonicalPath for class: java.net.URL
           groovy.lang.MissingPropertyException: No such property: canonicalPath for class: java.net.URL
           at org.codehaus.groovy.runtime.ScriptBytecodeAdapter.unwrap(ScriptBytecodeAdapter.java:50)
           at org.codehaus.groovy.runtime.callsite.GetEffectivePojoPropertySite.getProperty(GetEffectivePojoPropertySite.java:63)
           at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callGetProperty(AbstractCallSite.java:227)
           at groovy.grape.GrapeIvy.(GrapeIvy.groovy:96)
           at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)

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/*
 * org.nrg.xnat.restlet.extensions.GetRandomSubjectRestlet
 * TIP is developed by the Neuroinformatics Research Group
 * XNAT http://www.xnat.org
 * Copyright (c) 2014, Washington University School of Medicine
 * All Rights Reserved
 *
 * Released under the Simplified BSD.
 *
 * Last modified 7/22/14 9:24 AM

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insert into xdat_r_xdat_role_type_assign_xdat_user (xdat_user_xdat_user_id,xdat_role_type_role_name) values ((select xdat_user_id from xdat_user where login = '$USER$'),'Administrator');
delete from xs_item_cache where contents like '%$USER$%';

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{
    "event": "dicomImport",
    "content": "import org.dcm4che2.data.Tag\n\nlogger.info(\"Now running the site-wide splitPetMrSession script, I was passed ${defaultValue}\")\ndef sopClassUID = dicom.getString(Tag.SOPClassUID)\ndef modality = dicom.getString(Tag.Modality)\ndef seriesDescription = dicom.getString(Tag.SeriesDescription)\ndef isPet = \"PT\".equals(modality) || (\"1.3.12.2.1107.5.9.1\".equals(sopClassUID) && \"PET Start\".equals(seriesDescription))\nlogger.info(\"Found sopClassUID: ${sopClassUID}\")\nlogger.info(\"Found modality: ${modality}\")\nlogger.info(\"Found seriesDescription: ${seriesDescription}\")\nlogger.info(\"Found isPet: ${isPet}\")\ndef returnValue = \"PSYCH-${defaultValue}\"\nlogger.info(\"Result: ${returnValue} (cause I'm not actually doing much)\")\n\"${returnValue}\"\n",
    "language": "groovy",
    "languageVersion": "2.3.6"
}

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{
    "event": "dicomImport",
    "content": "import org.dcm4che2.data.Tag\n\nlogger.info(\"Now running the splitPetMrSession script for project ${projectId}, I was passed ${defaultValue}\")\ndef sopClassUID = dicom.getString(Tag.SOPClassUID)\ndef modality = dicom.getString(Tag.Modality)\ndef seriesDescription = dicom.getString(Tag.SeriesDescription)\ndef isPet = \"PT\".equals(modality) || (\"1.3.12.2.1107.5.9.1\".equals(sopClassUID) && \"PET Start\".equals(seriesDescription))\nlogger.info(\"Found sopClassUID: ${sopClassUID}\")\nlogger.info(\"Found modality: ${modality}\")\nlogger.info(\"Found seriesDescription: ${seriesDescription}\")\nlogger.info(\"Found isPet: ${isPet}\")\ndef returnValue = isPet ? defaultValue.reverse().replaceFirst(\"RM\", \"TEP\").reverse() : defaultValue\nlogger.info(\"Result: ${returnValue}\")\n\"${returnValue}\"\n",
    "language": "groovy",
    "languageVersion": "2.3.6"
}

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<?xml version="1.0" encoding="UTF-8"?>
<xs:schema targetNamespace="http://foo.edu/schemas"
    xmlns:foo="http://foo.edu/schemas"
    xmlns:xs="http://www.w3.org/2001/XMLSchema"
    xmlns:xnat="http://nrg.wustl.edu/xnat"
    elementFormDefault="qualified"
    attributeFormDefault="unqualified">
    
    <xs:import namespace="http://nrg.wustl.edu/xnat" schemaLocation="../xnat/xnat.xsd"/>

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import org.dcm4che2.data.Tag

logger.info("Now running the splitPetMrSession script for project ${projectId}, I was passed ${defaultValue}")
def sopClassUID = dicom.getString(Tag.SOPClassUID)
def modality = dicom.getString(Tag.Modality)
def seriesDescription = dicom.getString(Tag.SeriesDescription)
def isPet = "PT".equals(modality) || ("1.3.12.2.1107.5.9.1".equals(sopClassUID) && "PET Start".equals(seriesDescription))
logger.info("Found sopClassUID: ${sopClassUID}")
logger.info("Found modality: ${modality}")
logger.info("Found seriesDescription: ${seriesDescription}")

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alias setJava7="$(set | fgrep -i jdk | sed 's/1.8.0_25/1.7.0_71/g' | sed 's/^/export /')"
alias setJava8="$(set | fgrep -i jdk | sed 's/1.7.0_71/1.8.0_25/g' | sed 's/^/export /')"