ringw

import numpy as np

alphaCycle = np.loadtxt('alphaCycle.txt')
geneNames = np.loadtxt('alphaGenes.txt', dtype=str)
alphaDiscrete = np.zeros_like(alphaCycle, dtype=int)
alphaDiscrete[alphaCycle >= 1] = 1
alphaDiscrete[alphaCycle <= -1] = -1

print "# values >= 1:", np.sum(alphaDiscrete == 1)
print "# values <= -1:", np.sum(alphaDiscrete == -1)

ringw

-- Remove the history from 
rm -rf .git

-- recreate the repos from the current content only
git init
git add .
git commit -m "Initial commit"

-- push to the github remote repos ensuring you overwrite history
git remote add origin git@github.com:<YOUR ACCOUNT>/<YOUR REPOS>.git