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Created November 1, 2015 12:01
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Orthogonal distance regression in Python, with the same interface as the linregress function
# Copyright (c) 2013, Robin Wilson
# All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# * Redistributions of source code must retain the above copyright
# notice, this list of conditions and the following disclaimer.
# * Redistributions in binary form must reproduce the above copyright
# notice, this list of conditions and the following disclaimer in the
# documentation and/or other materials provided with the distribution.
# * Neither the name of Robin Wilson nor the
# names of its contributors may be used to endorse or promote products
# derived from this software without specific prior written permission.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
# ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
# DISCLAIMED. IN NO EVENT SHALL <COPYRIGHT HOLDER> BE LIABLE FOR ANY
# DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
# ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
from scipy.odr import Model, Data, ODR
from scipy.stats import linregress
import numpy as np
def orthoregress(x, y):
"""Perform an Orthogonal Distance Regression on the given data,
using the same interface as the standard scipy.stats.linregress function.
Arguments:
x: x data
y: y data
Returns:
[m, c, nan, nan, nan]
Uses standard ordinary least squares to estimate the starting parameters
then uses the scipy.odr interface to the ODRPACK Fortran code to do the
orthogonal distance calculations.
"""
linreg = linregress(x, y)
mod = Model(f)
dat = Data(x, y)
od = ODR(dat, mod, beta0=linreg[0:2])
out = od.run()
return list(out.beta) + [np.nan, np.nan, np.nan]
def f(p, x):
"""Basic linear regression 'model' for use with ODR"""
return (p[0] * x) + p[1]
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