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Lab04

Objectives

• read input temperatures by day
• write summarization in an output file

from tempin.txt

01/24/2019 5 22 27 31 26 19
01/25/2019 8 20 25 30 35 40 38 32 29

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'''
Indexing using PyLucene, example code
'''
import os
from pathlib import Path

import lucene

from java.nio.file import Paths
from org.apache.lucene.analysis.standard import StandardAnalyzer

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On Mac OS

Java

Both of Oracle Java 1.8 and Apple's Java 1.6 are required. You can download Oracle Java 1.8 from here.

For Apple's Java 1.6, download the package from here and install it.

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Lab 03

Schedule

• Project 1 is due by Feb 8
• Lab2 submission is due Tonight

Tips for Lab 03

How to print a float number with a fixed precision

ex) 41.4451 to 41.45

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"Is Hirschsprung disease a mendelian or a multifactorial disorder?" 
"List signaling molecules (ligands) that interact with the receptor EGFR?" 
"Is the protein Papilin secreted?" 
"Are long non coding RNAs spliced?" 
"Is RANKL secreted from the cells?" 
"Does metformin interfere thyroxine absorption?" 
"Which miRNAs could be used as potential biomarkers for epithelial ovarian cancer?" 
"Which acetylcholinesterase inhibitors are used for treatment of myasthenia gravis?" 
"Has Denosumab (Prolia) been approved by FDA?" 
"List the human genes encoding for the dishevelled proteins?" 

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STA 580 midterm summary

Lecture 1 - Numerical and graphical summaries of data

• graphical measures and plots
• measure of location
  • mean (x_bar)
  • median
• measure of dispersion
• variance

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STA580 final summary

ANOVA (analysis of variance)

• testing whether the means of two or more populations are equal
• must have a continuous response and at least one categorical factor

one-way ANOVA

• one fixed factor

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<description>A 15 yo girl accompanied by her mother is referred for evaluation by the school. The girl has more than expected absences in the last three month, appears to be constantly tired and sleepy in class. Her mother assures the girl is well fed, and getting the proper sleep at night but admits the girls tires easily when they go out on weekend hikes. Physical examination: BP: 90/60. HR 130/min the only remarkable findings are extremely pale skin and mucosae. Grade 3/6 systolic murmur. Lab tests report Hb: 4.2 g/dL, MCV 61.8 fL, serum iron less than 1.8 umol/L and ferritin of 2 ng/mL. Fecal occult blood is negative.</description>
<summary>A 15 yo girl with fatigue, pale skin, low hemoglobin and ferritin.</summary>
<diagnosis>Iron-Deficiency Anemia</diagnosis>
<target>treatment</target>

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public.xsd:

<?xml version="1.0" encoding="UTF-8" ?>

<!-- ============================================================================================

  XML Schema for ClinicalTrials.gov public XML
  http://clinicaltrials.gov/ct2/html/images/info/public.xsd
  National Library of Medicine, National Institutes of Health

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Environment

prefer NO (fancy) IDE like VS, XCode, Clion... I prefer plain text files

How to compile C++ file and Run

compile

g++ [source file] -o [executable file]