ernestum

import numpy as np
from scipy.ndimage.interpolation import map_coordinates
from scipy.ndimage.filters import gaussian_filter

def elastic_transform(image, alpha, sigma, random_state=None):
    """Elastic deformation of images as described in [Simard2003]_.
    .. [Simard2003] Simard, Steinkraus and Platt, "Best Practices for
       Convolutional Neural Networks applied to Visual Document Analysis", in
       Proc. of the International Conference on Document Analysis and
       Recognition, 2003.

chsasank

import numpy as np
from scipy.ndimage.interpolation import map_coordinates
from scipy.ndimage.filters import gaussian_filter

def elastic_transform(image, alpha, sigma, random_state=None):
    """Elastic deformation of images as described in [Simard2003]_.


    .. [Simard2003] Simard, Steinkraus and Platt, "Best Practices for
       Convolutional Neural Networks applied to Visual Document Analysis", in

peteflorence

Here's a simple implementation of bilinear interpolation on tensors using PyTorch.

I wrote this up since I ended up learning a lot about options for interpolation in both the numpy and PyTorch ecosystems. More generally than just interpolation, too, it's also a nice case study in how PyTorch magically can put very numpy-like code on the GPU (and by the way, do autodiff for you too).

For interpolation in PyTorch, this open issue calls for more interpolation features. There is now a nn.functional.grid_sample() feature but at least at first this didn't look like what I needed (but we'll come back to this later).

In particular I wanted to take an image, W x H x C, and sample it many times at different random locations. Note also that this is different than upsampling which exhaustively samples and also doesn't give us fle

ashokpant

#!/bin/bash

# install CUDA Toolkit v9.0
# instructions from https://developer.nvidia.com/cuda-downloads (linux -> x86_64 -> Ubuntu -> 16.04 -> deb)
CUDA_REPO_PKG="cuda-repo-ubuntu1604-9-0-local_9.0.176-1_amd64-deb"
wget https://developer.nvidia.com/compute/cuda/9.0/Prod/local_installers/${CUDA_REPO_PKG}
sudo dpkg -i ${CUDA_REPO_PKG}
sudo apt-key adv --fetch-keys http://developer.download.nvidia.com/compute/cuda/repos/ubuntu1604/x86_64/7fa2af80.pub
sudo apt-get update
sudo apt-get -y install cuda-9-0