twiecki

import dask
import dask.array as da
import dask.dataframe as dd
import sparse

@dask.delayed(pure=True)
def corr_on_chunked(chunk1, chunk2, corr_thresh=0.9):
    return sparse.COO.from_numpy((np.dot(chunk1, chunk2.T) > corr_thresh))
        
def chunked_corr_sparse_dask(data, chunksize=5000, corr_thresh=0.9):

brandon-rhodes

# Inspired by the following sentence that I ran across this morning:
#
#    "f_lineno is the current line number of the frame - writing to
#     this from within a trace function jumps to the given line
#     (only for the bottom-most frame). A debugger can implement a
#     Jump command (aka Set Next Statement) by writing to f_lineno."
#
#    https://docs.python.org/2/reference/datamodel.html
#
# There is an older implementation of a similar idea:

brantfaircloth

import sys
import time
from Bio import Entrez

Entrez.email = "your.email@domain.tld"
if not Entrez.email:
    print "you must add your email address"
    sys.exit(2)

# create an empty list we will fill with the gene names

saketkc

a=[]
while STDIN.readline.chomp!="42"
	a.push($_)
end
a.each  { |s| puts s }