build.xml

<project name="shogun" default="dist" basedir=".">
    <description>
        shogun java modular
    </description>
  <!-- set global properties for this build -->
  <property name="src" location="."/>
  <property name="classes" location="classes"/>
  <property name="test" location="../../examples/undocumented/java_modular/"/>
  <path id="project.classpath">
	  <pathelement location="shogun.jar"/>
	  <pathelement location="classes"/> 
	  <pathelement location="/home/serialhex/src/shogun/jblas/jblas.jar"/>
  </path>

  <target name="compile"
        description="compile the source " >
  <!-- Compile the java code -->
    <mkdir dir="${classes}"/>
    <javac srcdir="${src}" destdir="${classes}"/>
  </target>

  <target name="dist" depends="compile"
        description="generate the distribution" >
    <!-- Put everything into shogun.jar file -->
    <jar jarfile="shogun.jar" basedir="${classes}/"/>
  </target>

  <target name="test" depends="dist"
        description="test the examples" >

    <!-- test examples -->
    <javac srcdir="${test}" destdir="${classes}">
		<classpath refid="project.classpath"/> 
    </javac>
  </target>
  
  <target name="run" depends="test"
        description="run the examples" >
    <java classname="ClassifierLibsvmMinimalModular">
       <classpath refid="project.classpath"/> 
    </java>
  </target>
  
  <target name="clean"
        description="clean up" >
    <!-- Delete ${classes} directory trees -->
    <delete dir="${classes}"/>
  </target>
</project>

output

[~/src/shogun/shogun/src/java_modular]$ ant clean                                                                                             *[java][ruby-1.9.2-p180] 
Buildfile: /home/serialhex/src/shogun/shogun/src/java_modular/build.xml

clean:
   [delete] Deleting directory /home/serialhex/src/shogun/shogun/src/java_modular/classes

BUILD SUCCESSFUL
Total time: 1 second
[~/src/shogun/shogun/src/java_modular]$ CLASSPATH=/home/serialhex/src/shogun/jblas/jblas.jar:shogun.jar ant test                              *[java][ruby-1.9.2-p180] 
Buildfile: /home/serialhex/src/shogun/shogun/src/java_modular/build.xml

compile:
    [mkdir] Created dir: /home/serialhex/src/shogun/shogun/src/java_modular/classes
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/build.xml:19: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
    [javac] Compiling 593 source files to /home/serialhex/src/shogun/shogun/src/java_modular/classes

dist:
      [jar] Building jar: /home/serialhex/src/shogun/shogun/src/java_modular/shogun.jar

test:
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/build.xml:32: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
    [javac] Compiling 4 source files to /home/serialhex/src/shogun/shogun/src/java_modular/classes

BUILD SUCCESSFUL
Total time: 9 seconds
[~/src/shogun/shogun/src/java_modular]$ ant clean                                                                                             *[java][ruby-1.9.2-p180] 
Buildfile: /home/serialhex/src/shogun/shogun/src/java_modular/build.xml

clean:
   [delete] Deleting directory /home/serialhex/src/shogun/shogun/src/java_modular/classes

BUILD SUCCESSFUL
Total time: 0 seconds
[~/src/shogun/shogun/src/java_modular]$ ant test                                                                                              *[java][ruby-1.9.2-p180] 
Buildfile: /home/serialhex/src/shogun/shogun/src/java_modular/build.xml

compile:
    [mkdir] Created dir: /home/serialhex/src/shogun/shogun/src/java_modular/classes
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/build.xml:19: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
    [javac] Compiling 593 source files to /home/serialhex/src/shogun/shogun/src/java_modular/classes
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ANOVAKernel.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/DotKernel.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/BaseKernel.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/SGObject.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/RealFeatures.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/DotFeatures.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/BaseFeatures.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/DoubleStdVector.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/KernelNormalizer.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/IO.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/Parallel.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/Version.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/RealFeatures.java:97: cannot find symbol
    [javac] symbol  : class DoubleMatrix
    [javac] location: class org.shogun.RealFeatures
    [javac]   public DoubleMatrix get_feature_matrix() {
    [javac]          ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/RealFeatures.java:101: cannot find symbol
    [javac] symbol  : class DoubleMatrix
    [javac] location: class org.shogun.RealFeatures
    [javac]   public void set_feature_matrix(DoubleMatrix matrix) {
    [javac]                                  ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/StringCharFeatures.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/CharString.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/Alphabet.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/AUCKernel.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/Labels.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/Labels.java:48: cannot find symbol
    [javac] symbol  : class DoubleMatrix
    [javac] location: class org.shogun.Labels
    [javac]   public Labels(DoubleMatrix src) {
    [javac]                 ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/Labels.java:101: cannot find symbol
    [javac] symbol  : class DoubleMatrix
    [javac] location: class org.shogun.Labels
    [javac]   public DoubleMatrix get_labels() {
    [javac]          ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/Labels.java:105: cannot find symbol
    [javac] symbol  : class DoubleMatrix
    [javac] location: class org.shogun.Labels
    [javac]   public void set_labels(DoubleMatrix v) {
    [javac]                          ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/AccuracyMeasure.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ContingencyTableEvaluation.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/BinaryClassEvaluation.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/BaseEvaluation.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/AsciiFile.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/File.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/BoolSparseMatrix.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ByteSparseMatrix.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/CharSparseMatrix.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/IntSparseMatrix.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/UIntSparseMatrix.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/LongIntSparseMatrix.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ULongIntSparseMatrix.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ShortSparseMatrix.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/WordSparseMatrix.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ShortRealSparseMatrix.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/RealSparseMatrix.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/LongRealSparseMatrix.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/BoolString.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ByteString.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/IntString.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/UIntString.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ShortString.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/WordString.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/LongIntString.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ULongIntString.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ShortRealString.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/RealString.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/LongRealString.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/AttributeFeatures.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/AveragedPerceptron.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/LinearMachine.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/Machine.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/AvgDiagKernelNormalizer.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/BALMeasure.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/BaseDistance.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/BaseDistribution.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/BasePreprocessor.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/BinaryFile.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/BoolFeatures.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/BoolMatrix.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/BoolVector.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/BrayCurtisDistance.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/SimpleRealDistance.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ByteArray.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ByteArray2.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ByteArray3.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ByteFeatures.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ByteMatrix.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ByteVector.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/CCompressor.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/CDistanceMachine.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/CMachine.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/CNode.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/IntStdVector.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/CSVMLightOneClass.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/SVMLight.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/SVM.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/KernelMachine.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/SHRINK_STATE.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/TIMING.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/QP.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/MKL.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/CTaxonomy.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/CanberraMetric.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/CanberraWordDistance.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/StringWordDistance.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/StringWordFeatures.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/CauchyKernel.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/CharArray.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/CharArray2.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/CharArray3.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/CharFeatures.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/CharMatrix.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/CharVector.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ChebyshewMetric.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/Chi2Kernel.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] /home/serialhex/src/shogun/shogun/src/java_modular/org/shogun/ChiSquareDistance.java:11: package org.jblas does not exist
    [javac] import org.jblas.*;
    [javac] ^
    [javac] 100 errors

BUILD FAILED
/home/serialhex/src/shogun/shogun/src/java_modular/build.xml:19: Compile failed; see the compiler error output for details.

Total time: 6 seconds