Bogdan spock
spock
/ .gitignore
Last active
March 9, 2020 15:03
— forked from admackin/meshparse.py
Parse the 'desc' XML from MeSH (Medical Subject Headings) into Python objects
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| *.pyc |
spock
/ prinseq-lite.pl.patch
Created
February 24, 2016 10:56
quick and dirty prinseq-lite.pl (versions 0.20.3/0.20.4) patch to enable mkfifo named pipes as input files; beware, this patch disables input file format checking
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| diff --git a/prinseq-lite.pl b/prinseq-lite.pl | |
| index cad531a..de1eff3 100755 | |
| --- a/prinseq-lite.pl | |
| +++ b/prinseq-lite.pl | |
| @@ -583,7 +583,7 @@ if(exists $params{fasta} && exists $params{fastq}) { | |
| } | |
| } elsif(-e $params{fasta}) { | |
| #check for file format | |
| - my $format = &checkFileFormat($file1); | |
| + my $format = &checkFileFormat($file1, 'fasta'); |