RO Bundle manifest created from Combine Archive manifest using https://github.com/stain/ro-combine-archive - original from https://github.com/fbergmann/CombineArchive/blob/master/Samples/DirectoryMadness.omex

manifest.json

{
  "@context" : [ "https://w3id.org/bundle/context" ],
  "id" : "/",
  "manifest" : [ "/.ro/manifest.json", "/manifest.xml" ],
  "createdOn" : "2013-05-30T20:18:08Z",
  "aggregates" : [ {
    "file" : "/manifest0.xml",
    "folder" : "/",
    "mediatype" : "http://identifiers.org/combine.specifications/omex-metadata",
    "createdOn" : "2013-05-30T20:18:08Z",
    "proxy" : "urn:uuid:180a549d-7d3d-4161-be2b-bd8b2caab986"
  }, {
    "file" : "/BorisEJB.xml",
    "folder" : "/",
    "mediatype" : "http://identifiers.org/combine.specifications/sbml",
    "createdOn" : "2013-05-30T20:18:02Z",
    "proxy" : "urn:uuid:c0c37f5a-9e7b-45ce-b9f2-18741f4ddc26"
  }, {
    "file" : "/paper/Kholodenko2000.pdf",
    "folder" : "/paper/",
    "mediatype" : "application/pdf",
    "createdOn" : "2013-05-30T20:18:02Z",
    "proxy" : "urn:uuid:09720352-b564-40cd-90ab-c34c1b8786c5"
  }, {
    "file" : "/paper/a/b/c/d/test.txt",
    "folder" : "/paper/a/b/c/d/",
    "mediatype" : "plain/text",
    "createdOn" : "2013-05-30T20:18:02Z",
    "proxy" : "urn:uuid:3319713f-48e2-4833-a3e8-1889084d879e"
  }, {
    "uri" : "http://www.ebi.ac.uk/biomodels-main/BIOMD0000000010",
    "mediatype" : "http://identifiers.org/combine.specifications/sbml"
  } ]
}

manifest.xml

<?xml version='1.0' encoding='utf-8' standalone='yes'?>
<omexManifest xmlns="http://identifiers.org/combine.specifications/omex-manifest">
  <content location="./manifest.xml" format="http://identifiers.org/combine.specifications/omex-manifest" master="false" />
  <content location="./BorisEJB.xml" format="http://identifiers.org/combine.specifications/sbml" master="true" />
  <content location="./paper/Kholodenko2000.pdf" format="application/pdf" master="false" />
  <content location="./paper/a/b/c/d/test.txt" format="plain/text" master="false" />
  <content location="http://www.ebi.ac.uk/biomodels-main/BIOMD0000000010" format="http://identifiers.org/combine.specifications/sbml" master="false" />
  <content location="./manifest0.xml" format="http://identifiers.org/combine.specifications/omex-metadata" master="false" />
</omexManifest>