cwlprov

stain@biggie:~/dropbox/work/cwlprov/newest-swift/rnaseqwf_0.5.0_mac$ cwlprov run
2018-09-24 20:30:12.438801 Flow 6458a48e-fabc-448f-9f17-0a1c6ff9a674 [ Run of workflow/packed.cwl#main 
2018-09-24 20:30:26.239962 Step 201a6074-031a-4793-8719-863834d78cd9   Run of workflow/packed.cwl#main/run_star  (0:02:31.016639)
2018-09-24 20:32:57.294541 Step ff48e829-82b5-48fb-a0fb-c7a8cd038bf8   Run of workflow/packed.cwl#main/sort_bam  (0:00:02.014422)
2018-09-24 20:32:59.318559 Step 0128708d-e2a7-41f6-afe5-1833e4da59bc   Run of workflow/packed.cwl#main/index_bam  (0:00:01.680102)
2018-09-24 20:33:02.074684 Step 44f03c62-2d1b-478b-8f61-bfa1a3824d69   Run of workflow/packed.cwl#main/run_rsem  (0:00:14.659971)
2018-09-24 20:33:16.748069 Step b5ff0180-5466-4cf5-b9c3-b71bc0542eaa   Run of workflow/packed.cwl#main/run_markduplicates  (0:00:03.764102)
2018-09-24 20:33:20.519469 Step e9a3b636-20d2-43f5-96b1-0cea68b43044   Run of workflow/packed.cwl#main/run_index_markduplicates_bam  (0:00:01.502664)
2018-09-24 20:33:22.068415 Step da380296-6fcf-435f-9757-6ed3d7f6cb43   Run of workflow/packed.cwl#main/run_rna-seqc  (0:00:15.804955)
2018-09-24 20:33:37.927495 Flow 6458a48e-fabc-448f-9f17-0a1c6ff9a674 ] Run of workflow/packed.cwl#main  (0:03:25.488694)
Legend:
  [ Workflow start
  ] Workflow end
  
stain@biggie:~/dropbox/work/cwlprov/newest-swift/rnaseqwf_0.5.0_mac$ cwlprov inputs 44f03c62-2d1b-478b-8f61-bfa1a3824d69
Input estimate_rspd:
True
Input is_stranded:
True
Input max_frag_len:
1000
Input paired_end:
True
Input prefix_str:
LC_C13_cRNAI
Input rsem_ref_dir:
urn:uuid:39e20fd2-ff88-4c1d-bdb5-8af3b613f1f1
Input transcriptome_bam:
data/b8/b87b3a68ec499b800dc1fa3a5fd9e81a66a066d8

stain@biggie:~/dropbox/work/cwlprov/newest-swift/rnaseqwf_0.5.0_mac$ cwlprov outputs 44f03c62-2d1b-478b-8f61-bfa1a3824d69 --format=json
{"gene_results": {"class": "File", "path": "data/73/73cdebedc0388528c3d067b1194cb066d8631f4f"}, 
 "isoforms_results": {"class": "File", "path": "data/6c/6c0ae79199bbad064f636f9574e5a215600f1173"}}