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stain/gist:d331abfa5900b92ad047bdac13885818

Created April 18, 2019 12:45
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No docker in arvados?
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gistfile1.txt
2019-04-18T12:36:44.978016564Z 2019-04-18 12:36:44 cwltool INFO: /usr/bin/arvados-cwl-runner 1.3.1, arvados-python-client 1.3.1, cwltool 1.0.20181116032456
2019-04-18T12:36:44.978518764Z 2019-04-18 12:36:44 cwltool INFO: Resolved '/var/lib/cwl/run/workflows/rp2-to-rp2path.cwl' to 'file:///var/lib/cwl/run/workflows/rp2-to-rp2path.cwl'
2019-04-18T12:36:46.332686764Z 2019-04-18 12:36:46 cwltool INFO: ../../lib/cwl/run/workflows/rp2-to-rp2path.cwl:40:3: Unknown hint http://commonwl.org/cwldep#Dependencies
2019-04-18T12:36:46.810698664Z 2019-04-18 12:36:46 cwltool ERROR: Workflow error, try again with --debug for more information:
2019-04-18T12:36:46.810698664Z ../../lib/cwl/run/tools/RetroPath2/RetroPath2.cwl:9:5: While trying to get Docker image
2019-04-18T12:36:46.810698664Z 'ibisba/retropath2:latest', failed to
2019-04-18T12:36:46.810698664Z execute 'docker': [Errno 2] No such file or
2019-04-18T12:36:46.810698664Z directory: 'docker'
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