sdt5z@fir-s:~/tmp$ pwd
/home/sdt5z/tmp

sdt5z@fir-s:~/tmp$ find /home/sdt5z/tmp -name "accepted_hits.bam"
/home/sdt5z/tmp/condC_rep1-tophat/accepted_hits.bam
/home/sdt5z/tmp/condC_rep2-tophat/accepted_hits.bam
/home/sdt5z/tmp/condC_rep3-tophat/accepted_hits.bam
/home/sdt5z/tmp/condM_rep1-tophat/accepted_hits.bam
/home/sdt5z/tmp/condM_rep2-tophat/accepted_hits.bam
/home/sdt5z/tmp/condM_rep3-tophat/accepted_hits.bam

sdt5z@fir-s:~/tmp$ find `pwd` -name "accepted_hits.bam"
/home/sdt5z/tmp/condC_rep1-tophat/accepted_hits.bam
/home/sdt5z/tmp/condC_rep2-tophat/accepted_hits.bam
/home/sdt5z/tmp/condC_rep3-tophat/accepted_hits.bam
/home/sdt5z/tmp/condM_rep1-tophat/accepted_hits.bam
/home/sdt5z/tmp/condM_rep2-tophat/accepted_hits.bam
/home/sdt5z/tmp/condM_rep3-tophat/accepted_hits.bam