cmtk

default.nix

{stdenv, fetchurl, cmake}:

stdenv.mkDerivation {
  name = "cmtk-3.3.1";

  src = fetchurl {
    name = "cmtk-source.tar.gz";
    url = "https://www.nitrc.org/frs/download.php/8198/CMTK-3.3.1-Source.tar.gz/?i_agree=1&release_id=3143";
    sha256 = "7184a763d39ad96bb598bfd531628a34aa53e474db9e7cac4416c2a40ab10c6e";
  };

  buildInputs = [cmake];

  meta = {
    description     = "Computational Morphometry Toolkit ";
    longDescription = ''A software toolkit for computational morphometry of
      biomedical images, CMTK comprises a set of command line tools and a
      back-end general-purpose library for processing and I/O.'';
    license     = "GPL3";
    homepage    = https://www.nitrc.org/projects/cmtk/;
  };
}

gistfile1.txt

> nix-env -f ~/code/nixpkgs/ -iA cmtk 
installing 'cmtk-3.3.1'
these derivations will be built:
  /nix/store/ghszihh5d3y10b9gxn6rz97rza16c72z-cmtk-3.3.1.drv
building '/nix/store/ghszihh5d3y10b9gxn6rz97rza16c72z-cmtk-3.3.1.drv'...
unpacking sources
unpacking source archive /nix/store/zml6pkg4pmzn953vydnqlv71qz56ii1z-cmtk-source.tar.gz
source root is EMBOSS-6.6.0
setting SOURCE_DATE_EPOCH to timestamp 1373927739 of file EMBOSS-6.6.0/jemboss/lib/jemboss.jar
patching sources
configuring
fixing cmake files...
cmake flags: -DCMAKE_BUILD_TYPE=Release -DCMAKE_SKIP_BUILD_RPATH=ON -DCMAKE_INSTALL_INCLUDEDIR=/nix/store/8acrai7rvl0fxmzbg1hygizllmzq2djd-cmtk-3.3.1/include -DCMAKE_INSTALL_LIBDIR=/nix/store/8acrai7rvl0fxmzbg1hygizllmzq2djd-cmtk-3.3.1/lib -DCMAKE_INSTALL_NAME_DIR=/nix/store/8acrai7rvl0fxmzbg1hygizllmzq2djd-cmtk-3.3.1/lib -DCMAKE_POLICY_DEFAULT_CMP0025=NEW -DCMAKE_OSX_DEPLOYMENT_TARGET= -DCMAKE_OSX_SYSROOT= -DCMAKE_FIND_FRAMEWORK=last -DCMAKE_STRIP=/nix/store/bxgwclk8kjjczlrkilwb12jhcm0n8syk-binutils-2.30/bin/strip -DCMAKE_RANLIB=/nix/store/bxgwclk8kjjczlrkilwb12jhcm0n8syk-binutils-2.30/bin/ranlib -DCMAKE_AR=/nix/store/bxgwclk8kjjczlrkilwb12jhcm0n8syk-binutils-2.30/bin/ar -DCMAKE_C_COMPILER=gcc -DCMAKE_CXX_COMPILER=g++ -DCMAKE_INSTALL_PREFIX=/nix/store/8acrai7rvl0fxmzbg1hygizllmzq2djd-cmtk-3.3.1
CMake Error: The source directory "/build/EMBOSS-6.6.0" does not appear to contain CMakeLists.txt.
Specify --help for usage, or press the help button on the CMake GUI.
builder for '/nix/store/ghszihh5d3y10b9gxn6rz97rza16c72z-cmtk-3.3.1.drv' failed with exit code 1
error: build of '/nix/store/ghszihh5d3y10b9gxn6rz97rza16c72z-cmtk-3.3.1.drv' failed