tfmoraes

diff --git a/invesalius/data/brainmesh_handler.py b/invesalius/data/brainmesh_handler.py
index 172b3c3a..a6f6732b 100644
--- a/invesalius/data/brainmesh_handler.py
+++ b/invesalius/data/brainmesh_handler.py
@@ -33,6 +33,8 @@ class Brain:
         tmpPeel = downsample(refSurface)
         # Standard space coordinates
         mask_sFormMatrix = mask_reader.GetSFormMatrix()
+        if mask_sFormMatrix is None:
+            mask_sFormMatrix = vtk.vtkMatrix4x4()

tfmoraes

diff --git a/src/cmd/create.go b/src/cmd/create.go
index 74e90b1..c94e44d 100644
--- a/src/cmd/create.go
+++ b/src/cmd/create.go
@@ -298,6 +298,56 @@ func createContainer(container, image, release string, showCommandToEnter bool)
 		kcmSocketMount = []string{"--volume", kcmSocketMountArg}
 	}
 
+	var etcStaticMount []string
+    var resolveMount []string

tfmoraes

{
    "name": "python3-modules",
    "buildsystem": "simple",
    "build-commands": [
        "pip3 install --exists-action=i --no-index --find-links=\"file://${PWD}\" --prefix=${FLATPAK_DEST} wxpython numpy scipy imageio scikit-image Pillow pyserial psutil nibabel configparser h5py PyPubsub plaidml-keras cython"
    ],
    "build-options": {
        "env": {
            "WXPYTHON_BUILD_ARGS": "--use_syswx"
        }

tfmoraes

{ lib, pkgs, buildPythonPackage, fetchPypi, unzip, python }:

buildPythonPackage rec {
  pname = "plaidml";
  version = "0.7.0";
  format = "other";

  srcs = [
    (fetchPypi {
      inherit pname version;

tfmoraes

wget -qO - http://repo.radeon.com/rocm/apt/debian/rocm.gpg.key | sudo apt-key add -
echo 'deb [arch=amd64] http://repo.radeon.com/rocm/apt/debian/ xenial main' | sudo tee /etc/apt/sources.list.d/rocm.list

sudo apt update
sudo apt install rocm-dkms

sudo usermod -a -G render $LOGNAME
sudo reboot

tfmoraes

diff --git a/invesalius/data/slice_.py b/invesalius/data/slice_.py
index e53235f5..2380f15d 100644
--- a/invesalius/data/slice_.py
+++ b/invesalius/data/slice_.py
@@ -1381,7 +1381,7 @@ class Slice(with_metaclass(utils.Singleton, object)):
             colorer.SetInputData(image)
             colorer.SetWindow(self.window_width)
             colorer.SetLevel(self.window_level)
-            colorer.SetOutputFormatToRGB()
+            colorer.SetOutputFormatToLuminance()

tfmoraes

import os
import sys
from distutils.core import setup
from distutils.extension import Extension

import numpy
from Cython.Build import cythonize
from Cython.Distutils import build_ext

copt = {"msvc": ["/openmp"], "mingw32": ["-fopenmp"], "unix": ["-fopenmp"]}

tfmoraes

class Gdcm < Formula
  desc "Grassroots DICOM library and utilities for medical files"
  homepage "https://sourceforge.net/projects/gdcm/"
  url "https://downloads.sourceforge.net/project/gdcm/gdcm%202.x/GDCM%202.8.9/gdcm-2.8.9.tar.gz"
  sha256 "a2da88b7b3cbf9e76a9df3e89d06d057cca9ce54fc62fb059e04f47bf056b727"

  bottle do
    sha256 "9f3d3a1de707e4184bc62fa7070fccb39c9fd1864966e49dc58e93c0616ec012" => :mojave
    sha256 "ad87ce2f85f16278131b692b12c33cbf1f02af7263c04a9b3dc1cb8188bcdf53" => :high_sierra
    sha256 "ba985660d7000a4f8b054a63269c60cab9c542e46e81864d8ef8621c2a246cbf" => :sierra

tfmoraes

diff --git a/Utilities/VTK/vtkImageColorViewer.cxx b/Utilities/VTK/vtkImageColorViewer.cxx
index 3d6df39..ea857ef 100644
--- a/Utilities/VTK/vtkImageColorViewer.cxx
+++ b/Utilities/VTK/vtkImageColorViewer.cxx
@@ -539,7 +539,15 @@ public:
 
       if (event == vtkCommand::ResetWindowLevelEvent)
         {
-#if (VTK_MAJOR_VERSION >= 6)
+#if VTK_MAJOR_VERSION > 7 || (VTK_MAJOR_VERSION == 7 && VTK_MINOR_VERSION >= 1)

tfmoraes

diff --git a/Utilities/VTK/vtkGDCMPolyDataWriter.cxx b/Utilities/VTK/vtkGDCMPolyDataWriter.cxx
index e2c661c39..62eda25f5 100644
--- a/Utilities/VTK/vtkGDCMPolyDataWriter.cxx
+++ b/Utilities/VTK/vtkGDCMPolyDataWriter.cxx
@@ -586,7 +586,11 @@ void vtkGDCMPolyDataWriter::WriteRTSTRUCTData(gdcm::File &file, int pdidx )
   if( darray )
     {
     double tuple[3];
+#if (VTK_MAJOR_VERSION >= 8)
+    darray->GetTypedTuple( 0, tuple );