Matt McCormick thewtex
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thewtex
/ hypha-client.ipynb
Last active
June 9, 2023 16:05
AI4Life 2023 hackathon hypha remote render
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thewtex
/ itk-dask-blogpost.ipynb
Created
March 3, 2023 12:43
— forked from GenevieveBuckley/itk-dask-blogpost.ipynb
ITK + Dask notebooks (August 2022)
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thewtex
/ ViewerChannelTestingData.ipynb
Last active
May 11, 2022 14:23
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thewtex
/ I46_tiles_ngff_datatree.ipynb
Created
April 21, 2022 21:23
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thewtex
/ save_image_from_numpy_array_affine_matrix.py
Created
August 9, 2021 21:55
Save an image from a numpy array and an affine matrix
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| import itk | |
| import numpy as np | |
| def save(np_array: np.ndarray, filename: str, affine_matrix: np.ndarray): | |
| # -1 for translation | |
| Dimension = affine_matrix.shape[0] - 1 | |
| # Is this a multi-component image? | |
| is_vector = np_array.ndim != Dimension | |
| print('is_vector', is_vector) |
thewtex
/ ImageChannelInterleavedContiguous.ipynb
Last active
October 27, 2020 15:07
Demonstrate image channel interleaved vs contiguous in ITK / PIL / Matplotlib versus PyTorch
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thewtex
/ Segmentation_Image_Distance.ipynb
Created
August 10, 2020 17:05
Segmentation image distance
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thewtex
/ AnisotropicSpacing.ipynb
Created
June 21, 2020 03:56
X/Y/Z anisotropic voxel scaling possible with the itkwidgets.view function?
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thewtex
/ ContourExtractor2D.ipynb
Created
June 10, 2020 02:28
itk.ContourExtractor2DImageFilter example
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