Last active
December 22, 2019 11:43
-
-
Save tpoterba/790ea7d5e97dcd9aeac5f73bbc031185 to your computer and use it in GitHub Desktop.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Found non-overlapping benchmarks: | |
matrix_table_scan_count_cols | |
matrix_table_scan_count_rows | |
Failed benchmarks in run 1: | |
group_by_collect_per_row | |
read_with_index_p1000 | |
matrix_table_show | |
gnomad_coverage_stats_optimized | |
group_by_take_rekey | |
export_range_matrix_table_entry_field_p100 | |
ndarray_matmul_int64_benchmark | |
table_aggregate_downsample_dense | |
ndarray_addition_benchmark | |
ndarray_matmul_float64_benchmark | |
matrix_table_filter_entries_unfilter | |
concordance | |
export_range_matrix_table_row_p100 | |
make_ndarray_bench | |
block_matrix_nested_multiply | |
table_aggregate_linreg | |
shuffle_order_by_10m_int | |
export_range_matrix_table_col_p100 | |
table_aggregate_int_stats | |
split_multi | |
Failed benchmarks in run 2: | |
block_matrix_nested_multiply | |
Name Ratio Time 1 Time 2 | |
---- ----- ------ ------ | |
write_range_table_p100 271.8% 6.120 16.635 | |
write_range_table_p10 270.0% 5.062 13.671 | |
write_range_table_p1000 195.4% 16.378 32.003 | |
matrix_table_many_aggs_col_wise 135.0% 24.146 32.607 | |
table_big_aggregate_compilation 130.9% 6.059 7.931 | |
import_bgen_force_count_all 128.6% 142.270 182.944 | |
import_bgen_filter_count 113.0% 141.061 159.360 | |
table_aggregate_array_sum 106.6% 13.863 14.776 | |
hwe_normalized_pca 104.6% 41.948 43.880 | |
import_bgen_force_count_just_gp 103.6% 138.725 143.760 | |
table_range_join_1b_1b 100.0% 1800.000 1800.000 | |
write_range_matrix_table_p100 98.2% 6.968 6.846 | |
table_import_strings 96.8% 37.662 36.443 | |
sample_qc 95.8% 30.374 29.106 | |
import_vcf_write 93.7% 115.315 108.015 | |
import_bgen_info_score 92.1% 202.774 186.781 | |
export_vcf 89.3% 85.650 76.449 | |
import_vcf_count_rows 86.3% 19.618 16.931 | |
matrix_table_aggregate_entries 85.7% 6.545 5.607 | |
table_read_force_count_ints 85.5% 10.145 8.675 | |
matrix_table_decode_and_count 83.6% 9.454 7.906 | |
variant_and_sample_qc 80.4% 54.405 43.721 | |
matrix_table_many_aggs_row_wise 78.0% 20.607 16.070 | |
read_decode_gnomad_coverage 77.5% 8.791 6.814 | |
table_import_ints 76.4% 184.477 140.950 | |
matrix_table_call_stats_star_star 74.9% 13.703 10.264 | |
variant_qc 73.8% 10.646 7.861 | |
shuffle_key_rows_by_mt 72.4% 53.388 38.649 | |
matrix_table_array_arithmetic 71.8% 22.971 16.502 | |
matrix_table_filter_entries 68.7% 14.328 9.849 | |
table_group_by_aggregate_sorted 65.6% 9.327 6.117 | |
table_group_by_aggregate_unsorted 63.3% 9.168 5.802 | |
table_aggregate_counter 61.2% 19.754 12.094 | |
table_read_force_count_strings 61.1% 7.666 4.686 | |
read_force_count_p1000 59.6% 9.715 5.789 | |
per_row_stats_star_star 56.4% 24.524 13.832 | |
matrix_table_decode_and_count_just_gt 56.0% 9.331 5.227 | |
shuffle_key_rows_by_4096_byte_rows 54.6% 32.453 17.724 | |
table_range_force_count 53.4% 12.645 6.758 | |
join_p1000_p1000 53.4% 101.951 54.484 | |
genetics_pipeline 52.5% 286.578 150.553 | |
table_big_aggregate_compile_and_execute 48.5% 20.773 10.069 | |
join_p100_p100 48.3% 97.727 47.238 | |
matrix_table_entries_table 43.9% 424.585 186.494 | |
shuffle_key_rows_by_65k_byte_rows 43.6% 65.119 28.363 | |
table_annotate_many_flat 39.3% 2.131 0.836 | |
kyle_sex_specific_qc 38.5% 25.491 9.808 | |
read_force_count_p100 34.7% 6.627 2.301 | |
table_python_construction 33.9% 4.590 1.554 | |
join_p10_p100 32.8% 219.324 71.937 | |
union_p1000_p1000 31.1% 60.557 18.809 | |
join_p100_p10 30.3% 220.450 66.711 | |
table_aggregate_downsample_worst_case 30.1% 111.043 33.390 | |
split_multi_hts 29.5% 126.347 37.307 | |
union_p100_p100 29.3% 52.561 15.424 | |
large_range_matrix_table_sum 28.6% 1800.000 514.520 | |
read_force_count_p10 28.4% 6.148 1.748 | |
table_foreign_key_join_same_cardinality 26.7% 57.597 15.353 | |
table_foreign_key_join_left_higher_cardinality 26.5% 55.102 14.608 | |
table_key_by_shuffle 24.9% 18.269 4.542 | |
matrix_table_entries_table_no_key 23.7% 237.040 56.085 | |
table_aggregate_take_by_strings 20.9% 29.871 6.253 | |
union_p10_p100 20.3% 180.837 36.722 | |
join_p1000_p10 18.0% 1447.494 260.218 | |
join_p10_p1000 17.3% 1465.386 253.191 | |
union_p1000_p10 15.8% 1400.043 220.826 | |
union_p10_p1000 14.3% 1456.813 208.896 | |
table_range_means 5.2% 126.879 6.548 | |
table_annotate_many_nested_dependence_constants 0.9% 315.075 2.727 | |
table_annotate_many_nested_dependence 0.6% 959.692 6.071 | |
table_annotate_many_nested_no_dependence 0.3% 953.952 3.169 | |
table_range_join_1b_1k 0.0% 729.242 0.165 | |
---------------------- | |
Geometric mean: 40.3% | |
Simple mean: 64.8% | |
Median: 56.2% |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment