Tru Huynh truatpasteurdotfr
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| <a rel="me" href="https://fosstodon.org/@tru">Mastodon</a> |
truatpasteurdotfr
/ default.ipxe
Last active
May 20, 2022 21:44
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| #!ipxe | |
| :MENU | |
| menu | |
| item --gap -- https://gist.github.com/truatpasteurdotfr/d5c3c250b3fcc41813c2b00e305b843f | |
| item --gap -- iPXE boot menu ---------------- | |
| item --gap -- ------------------------------------------------ | |
| item c7-rescue CentOS-7 x86_64 rescue | |
| item c8-stream-rescue Stream-8 x86_64 rescue | |
| item --gap -- ------------------------------------------------ | |
| item memtest - memtest (from Stream 8) |
truatpasteurdotfr
/ non-root.txt
Created
March 21, 2022 08:29
apptainer -d exec docker://busybox /bin/busybox 2>&1 | tee /tmp/non-root.txt; doas apptainer -d exec docker://busybox /bin/busybox 2>&1 | tee /tmp/root.txt
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| DEBUG [U=2765,P=17030] persistentPreRun() Apptainer version: 1.0.1 | |
| DEBUG [U=2765,P=17030] persistentPreRun() Parsing configuration file /etc/apptainer/apptainer.conf | |
| DEBUG [U=2765,P=17030] handleConfDir() /home/tru/.apptainer already exists. Not creating. | |
| DEBUG [U=2765,P=17030] getCacheParentDir() environment variable APPTAINER_CACHEDIR not set, using default image cache | |
| DEBUG [U=2765,P=17030] parseURI() Parsing docker://busybox into reference | |
| INFO [U=2765,P=17030] pull() Using cached SIF image | |
| DEBUG [U=2765,P=17030] execStarter() Saving umask 0022 for propagation into container | |
| DEBUG [U=2765,P=17030] execStarter() Checking for encrypted system partition | |
| DEBUG [U=2765,P=17030] Init() Image format detection | |
| DEBUG [U=2765,P=17030] Init() Check for sandbox image format |
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| # Contributor: "Tru Huynh <tru@pasteur.fr>" | |
| # Maintainer: "Tru Huynh <tru@pasteur.fr>" | |
| pkgname=apptainer | |
| pkgver=1.0.0_rc2 | |
| realpkgver=1.0.0-rc.2 | |
| pkgrel=0 | |
| pkgdesc="Apptainer: Application containers for Linux" | |
| url="https://github.com/apptainer/apptainer" | |
| arch="x86_64" | |
| # https://raw.githubusercontent.com/apptainer/apptainer/main/LICENSE.md |
truatpasteurdotfr
/ c7rescue
Created
July 20, 2021 21:29
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| sshpw --username=root centos7 --plaintext | |
| reboot | |
| url --url="http://mirror.sov.uk.goscomb.net/centos/7/os/x86_64" | |
| text | |
| eula --agreed | |
| %packages | |
| @core | |
| %end | |
| %pre |
truatpasteurdotfr
/ Singularity
Created
December 14, 2020 16:22
quick and dirty miniconda on CentOS7 for R 4.0 and python 3.6
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| Bootstrap: docker | |
| From: centos:7 | |
| %post | |
| yum -y update && \ | |
| yum -y install bzip2 && \ | |
| yum -y clean all | |
| # install miniconda | |
| curl -qsSLkO https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh \ |
truatpasteurdotfr
/ RAW.yml
Created
November 3, 2020 09:01
adapted from https://bioxtas-raw.readthedocs.io/en/latest/install/linux_gen.html
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| name: RAW | |
| channels: | |
| - conda-forge | |
| - defaults | |
| dependencies: | |
| - _libgcc_mutex=0.1=main | |
| - blas=1.0=mkl | |
| - ca-certificates=2020.6.20=hecda079_0 | |
| - cairo=1.14.12=h8948797_3 | |
| - certifi=2020.6.20=py37he5f6b98_2 |
truatpasteurdotfr
/ gist:36412615217f61b11b27fb591bdf79ca
Created
November 2, 2020 10:09
https://bitbucket.org/biophys-uh/doglycans conda yml
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| name: doglycans | |
| channels: | |
| - openbabel | |
| - defaults | |
| dependencies: | |
| - _libgcc_mutex=0.1=main | |
| - blas=1.0=mkl | |
| - bzip2=1.0.8=h7b6447c_0 | |
| - ca-certificates=2020.10.14=0 | |
| - cairo=1.14.12=h8948797_3 |
truatpasteurdotfr
/ Singularity
Created
June 12, 2020 15:45
Singularity(alternative a docker build host) recipe for a CentOS-7 based veyon builder
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| Bootstrap: docker | |
| From: centos:7 | |
| %post | |
| mkdir -p /selinux /misc /net | |
| mkdir -p /pasteur | |
| mkdir -p /local-storage /mnt/beegfs /baycells/home /baycells/scratch /c6/shared /c6/eb /local/gensoft2 /c6/shared/rpm /Bis/Scratch2 /mnt/beegfs | |
| mkdir -p /c7/shared /c7/scratch /c7/home | |
| yum -y update |
truatpasteurdotfr
/ veyon.spec-4.4.0
Created
June 10, 2020 19:36
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| # -*- rpm-spec -*- | |
| Summary: Open source computer monitoring and classroom management | |
| Name: veyon | |
| Version: 4.4.0 | |
| Release: 1%{?dist} | |
| License: GPLv2 | |
| Group: unknown | |
| Vendor: Veyon Solutions | |
| # ~/rpmbuild/SOURCES/veyon-4.3.5-src.tar.bz2 | |
| Source: %{name}-%{version}-src.tar.bz2 |
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