Tru Huynh truatpasteurdotfr
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| <a rel="me" href="https://fosstodon.org/@tru">Mastodon</a> |
truatpasteurdotfr
/ default.ipxe
Last active
May 20, 2022 21:44
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| #!ipxe | |
| :MENU | |
| menu | |
| item --gap -- https://gist.github.com/truatpasteurdotfr/d5c3c250b3fcc41813c2b00e305b843f | |
| item --gap -- iPXE boot menu ---------------- | |
| item --gap -- ------------------------------------------------ | |
| item c7-rescue CentOS-7 x86_64 rescue | |
| item c8-stream-rescue Stream-8 x86_64 rescue | |
| item --gap -- ------------------------------------------------ | |
| item memtest - memtest (from Stream 8) |
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| wget https://download.kde.org/stable/krita/4.2.1/gmic_krita_qt-x86_64.appimage.sig https://download.kde.org/stable/krita/4.2.1/krita-4.2.1-x86_64.appimage.sig https://download.kde.org/stable/krita/4.2.1/gmic_krita_qt-x86_64.appimage https://download.kde.org/stable/krita/4.2.1/krita-4.2.1-x86_64.appimage | |
| gpg --recv-key 722EA3BD | |
| gpg --verify krita-4.2.1-x86_64.appimage.sig | |
| gpg --verify gmic_krita_qt-x86_64.appimage.sig | |
| [tru@elitebook840g3 shm]$ uname -a | |
| Linux elitebook840g3 3.10.0-957.12.2.el7.x86_64 #1 SMP Tue May 14 21:24:32 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux | |
| [tru@elitebook840g3 shm]$ ./krita-4.2.1-x86_64.appimage | |
| ./krita-4.2.1-x86_64.appimage: /lib64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /tmp/.mount_krita-RI51WX/usr/bin/../lib/libkritaui.so.18) | |
| ./krita-4.2.1-x86_64.appimage: /lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by /tmp/.mount_krita-RI51WX/usr/bin/../lib/libkritaui.so.18) | |
| ./krita-4.2.1-x86_64.appimage: /lib64/libstdc++.so.6: version `CXXABI_1.3.8' |
truatpasteurdotfr
/ non-root.txt
Created
March 21, 2022 08:29
apptainer -d exec docker://busybox /bin/busybox 2>&1 | tee /tmp/non-root.txt; doas apptainer -d exec docker://busybox /bin/busybox 2>&1 | tee /tmp/root.txt
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| DEBUG [U=2765,P=17030] persistentPreRun() Apptainer version: 1.0.1 | |
| DEBUG [U=2765,P=17030] persistentPreRun() Parsing configuration file /etc/apptainer/apptainer.conf | |
| DEBUG [U=2765,P=17030] handleConfDir() /home/tru/.apptainer already exists. Not creating. | |
| DEBUG [U=2765,P=17030] getCacheParentDir() environment variable APPTAINER_CACHEDIR not set, using default image cache | |
| DEBUG [U=2765,P=17030] parseURI() Parsing docker://busybox into reference | |
| INFO [U=2765,P=17030] pull() Using cached SIF image | |
| DEBUG [U=2765,P=17030] execStarter() Saving umask 0022 for propagation into container | |
| DEBUG [U=2765,P=17030] execStarter() Checking for encrypted system partition | |
| DEBUG [U=2765,P=17030] Init() Image format detection | |
| DEBUG [U=2765,P=17030] Init() Check for sandbox image format |
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| # Contributor: "Tru Huynh <tru@pasteur.fr>" | |
| # Maintainer: "Tru Huynh <tru@pasteur.fr>" | |
| pkgname=apptainer | |
| pkgver=1.0.0_rc2 | |
| realpkgver=1.0.0-rc.2 | |
| pkgrel=0 | |
| pkgdesc="Apptainer: Application containers for Linux" | |
| url="https://github.com/apptainer/apptainer" | |
| arch="x86_64" | |
| # https://raw.githubusercontent.com/apptainer/apptainer/main/LICENSE.md |
truatpasteurdotfr
/ c7rescue
Created
July 20, 2021 21:29
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| sshpw --username=root centos7 --plaintext | |
| reboot | |
| url --url="http://mirror.sov.uk.goscomb.net/centos/7/os/x86_64" | |
| text | |
| eula --agreed | |
| %packages | |
| @core | |
| %end | |
| %pre |
truatpasteurdotfr
/ Singularity
Created
December 14, 2020 16:22
quick and dirty miniconda on CentOS7 for R 4.0 and python 3.6
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| Bootstrap: docker | |
| From: centos:7 | |
| %post | |
| yum -y update && \ | |
| yum -y install bzip2 && \ | |
| yum -y clean all | |
| # install miniconda | |
| curl -qsSLkO https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh \ |
truatpasteurdotfr
/ RAW.yml
Created
November 3, 2020 09:01
adapted from https://bioxtas-raw.readthedocs.io/en/latest/install/linux_gen.html
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| name: RAW | |
| channels: | |
| - conda-forge | |
| - defaults | |
| dependencies: | |
| - _libgcc_mutex=0.1=main | |
| - blas=1.0=mkl | |
| - ca-certificates=2020.6.20=hecda079_0 | |
| - cairo=1.14.12=h8948797_3 | |
| - certifi=2020.6.20=py37he5f6b98_2 |
truatpasteurdotfr
/ gist:36412615217f61b11b27fb591bdf79ca
Created
November 2, 2020 10:09
https://bitbucket.org/biophys-uh/doglycans conda yml
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| name: doglycans | |
| channels: | |
| - openbabel | |
| - defaults | |
| dependencies: | |
| - _libgcc_mutex=0.1=main | |
| - blas=1.0=mkl | |
| - bzip2=1.0.8=h7b6447c_0 | |
| - ca-certificates=2020.10.14=0 | |
| - cairo=1.14.12=h8948797_3 |
truatpasteurdotfr
/ gist:d541cd279b9f7bf38ce967aa3743dfcb
Last active
September 3, 2020 13:11
building bazel on CentOS-6
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| # install environment to build bazel | |
| # adapted from https://github.com/bazelbuild/bazel/wiki/FAQ | |
| # nice to see that they are using my old devtoolset-2 | |
| sudo yum -y install wget which findutils tar gzip zip unzip git zlib-devel | |
| sudo yum -y install java-1.8.0-openjdk-devel | |
| # one should really use the latest devtoolset-N from scl-rh | |
| # to use newer gcc versions | |
| # devtoolset-2-gcc.x86_64 4.8.2-15.el6 @devtools | |
| # devtoolset-3-gcc.x86_64 4.9.2-6.2.el6 @centos-sclo-rh | |
| # devtoolset-4-gcc.x86_64 5.3.1-6.1.el6 @centos-sclo-rh |
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