tuttelikz

$ pip install farabio

tuttelikz

from farabio.data.biodatasets import HistocancerDataset
train_dataset = HistocancerDataset(root=".", download=True, train=True)
train_dataset.visualize_dataset()

tuttelikz

from farabio.data.biodatasets import RetinopathyDataset
train_dataset = RetinopathyDataset(root=".", transform=None, download=True)
train_dataset.visualize_dataset(9)

tuttelikz

from farabio.data.biodatasets import DSB18Dataset
train_dataset = DSB18Dataset(root=".", transform=None, download=False)
train_dataset.visualize_dataset(5)

tuttelikz

from farabio.data.biodatasets import ChestXrayDataset
train_dataset = ChestXrayDataset(root=".", transform=None, download=True)
train_dataset.visualize_dataset()

tuttelikz

"""This script summarizes information on system and virtual environment.
Modified from https://github.com/facebookresearch/detectron2/raw/master/detectron2/utils/collect_env.py
Under Apache License 2.0

Run following in the terminal:
$$ git clone https://gist.github.com/tuttelikz/ebd5ab3ffb29cb9399f2596b8f163a4e a && python a/cenv.py

Sample output:
----------------------  --------------------------------------------------------------------------------------
sys.platform            linux

tuttelikz

def pltImgProfile(img_gray, pt1=None, pt2=None):
    """Plots image profile (x and y)
    
    Parameters
    ----------
    img_gray : np.array
        image (grayscale)
    pt1 : tuple
        coordinates of first point (row1, col1)
    pt2 : tuple

tuttelikz

"""
* MultiprocessingExample.py *

Example to use multiprocessing.Pool with map.
Copies images from source folder to destination.

# Author: San Askaruly | @tuttelikz
"""

from os import listdir

tuttelikz

set(gca,'position',[0 0 1 1],'units','normalized')

tuttelikz

copyfile(fullfile(docroot, 'techdoc','creating_guis',...
  'examples','simple_gui2*.*')), fileattrib('simple_gui2*.*', '+w');
edit simple_gui2.m