verdurin/HPL-2.2-foss-2018a_partial.log

## HPL-2.2-foss-2018a_partial.log
== 2018-01-12 17:57:36,497 easyblock.py:264 INFO This is EasyBuild 3.5.0 (framework: 3.5.0, easyblocks: 3.5.0) on host rescomp2.
== 2018-01-12 17:57:36,497 easyblock.py:270 INFO This is easyblock EB_HPL from module easybuild.easyblocks.hpl (/well/rescomp/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyblocks-3.5.0-py2.7.egg/easybuild/easyblocks/h/hpl.py)
== 2018-01-12 17:57:36,498 easyblock.py:815 INFO Build dir set to /dev/shm/HPL/2.2/foss-2018a
== 2018-01-12 17:57:36,498 config.py:460 DEBUG software install path as specified by 'installpath' and 'subdir_software': /well/rescomp/eb/software
== 2018-01-12 17:57:36,498 easyconfig.py:1688 DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f677b9bf1d0>
== 2018-01-12 17:57:36,498 easyconfig.py:1694 DEBUG Obtained subdir HPL/2.2-foss-2018a
== 2018-01-12 17:57:36,498 easyblock.py:856 INFO Software install dir set to /well/rescomp/eb/software/HPL/2.2-foss-2018a
== 2018-01-12 17:57:36,498 config.py:460 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /well/rescomp/eb/modules
== 2018-01-12 17:57:36,499 easyblock.py:861 INFO Module install dir set to /well/rescomp/eb/modules/all
== 2018-01-12 17:57:36,499 easyblock.py:249 INFO Init completed for application name HPL version 2.2
== 2018-01-12 17:57:36,499 easyblock.py:2659 INFO Obtained application instance of for HPL (easyblock: None)
== 2018-01-12 17:57:36,499 easyblock.py:2672 DEBUG Skip set to False
== 2018-01-12 17:57:36,499 build_log.py:233 INFO building and installing HPL/2.2-foss-2018a...
== 2018-01-12 17:57:36,499 easyblock.py:2438 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False
== 2018-01-12 17:57:36,499 build_log.py:233 INFO fetching files...
== 2018-01-12 17:57:36,500 easyblock.py:2446 INFO Starting fetch step
== 2018-01-12 17:57:36,500 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f677b9bf1d0>
== 2018-01-12 17:57:36,500 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2018-01-12 17:57:36,500 templates.py:219 DEBUG name: github_account, config: None
== 2018-01-12 17:57:36,500 templates.py:219 DEBUG name: name, config: HPL
== 2018-01-12 17:57:36,500 templates.py:219 DEBUG name: version, config: 2.2
== 2018-01-12 17:57:36,501 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-01-12 17:57:36,501 templates.py:219 DEBUG name: versionprefix, config:
== 2018-01-12 17:57:36,501 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f677b9bf1d0>
== 2018-01-12 17:57:36,501 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2018-01-12 17:57:36,501 templates.py:219 DEBUG name: github_account, config: None
== 2018-01-12 17:57:36,501 templates.py:219 DEBUG name: name, config: HPL
== 2018-01-12 17:57:36,501 templates.py:219 DEBUG name: version, config: 2.2
== 2018-01-12 17:57:36,502 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-01-12 17:57:36,502 templates.py:219 DEBUG name: versionprefix, config:
== 2018-01-12 17:57:36,502 easyblock.py:2452 INFO Running method fetch_step part of step fetch
== 2018-01-12 17:57:36,502 easyblock.py:1557 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2018-01-12 17:57:36,502 filetools.py:343 INFO Command eb found at /well/rescomp/eb/software/EasyBuild/3.5.0/bin/eb
== 2018-01-12 17:57:36,503 tools.py:263 DEBUG Also considering installation prefix /gpfs2/well/rescomp/eb/software/EasyBuild/3.5.0...
== 2018-01-12 17:57:36,503 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /gpfs0/users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs
== 2018-01-12 17:57:36,503 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs
== 2018-01-12 17:57:36,503 tools.py:272 DEBUG Added /users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2018-01-12 17:57:36,503 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/ebfiles_repo/easybuild/easyconfigs
== 2018-01-12 17:57:36,504 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs/easybuild/easyconfigs
== 2018-01-12 17:57:36,504 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-sUGKFn/files_pr5577/easybuild/easyconfigs
== 2018-01-12 17:57:36,504 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/GitPython-2.1.7-py2.7.egg/git/ext/gitdb/easybuild/easyconfigs
== 2018-01-12 17:57:36,504 tools.py:268 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs
== 2018-01-12 17:57:36,504 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/setuptools-18.1-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,504 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/ecdsa-0.13-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,504 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/paramiko-1.15.2-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,505 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/prettytable-0.7.2-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,505 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/pyCLI-devel-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,505 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/SQLAlchemy-1.0.8-py2.7-linux-x86_64.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,505 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/parsedatetime-1.5-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,505 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/boto-2.38.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,506 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/pip-7.1.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,506 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/Babel-2.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,506 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/simplejson-3.8.0-py2.7-linux-x86_64.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,506 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/requests-2.7.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,506 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/iso8601-0.1.10-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,506 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/argparse-1.3.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,507 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/six-1.9.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,507 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/gc3pie-2.4.2-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,507 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_install-0.10.26-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,507 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,507 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_framework-3.5.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,507 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyblocks-3.5.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,508 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,508 tools.py:272 DEBUG Added /well/rescomp/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2018-01-12 17:57:36,508 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/GitPython-2.1.7-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,508 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/gitdb2-2.0.3-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,508 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/smmap2-2.0.3-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,508 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,509 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/site-packages/pysam-0.9.0-py2.7-linux-x86_64.egg/easybuild/easyconfigs
== 2018-01-12 17:57:36,509 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib64/python2.7/site-packages/easybuild/easyconfigs
== 2018-01-12 17:57:36,509 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/easybuild/easyconfigs
== 2018-01-12 17:57:36,509 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild/easyconfigs
== 2018-01-12 17:57:36,509 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python27.zip/easybuild/easyconfigs
== 2018-01-12 17:57:36,509 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/easybuild/easyconfigs
== 2018-01-12 17:57:36,509 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/plat-linux2/easybuild/easyconfigs
== 2018-01-12 17:57:36,510 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/lib-tk/easybuild/easyconfigs
== 2018-01-12 17:57:36,510 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/lib-old/easybuild/easyconfigs
== 2018-01-12 17:57:36,510 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/lib-dynload/easybuild/easyconfigs
== 2018-01-12 17:57:36,510 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/easybuild/easyconfigs
== 2018-01-12 17:57:36,510 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/site-packages/easybuild/easyconfigs
== 2018-01-12 17:57:36,510 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib64/python2.7/site-packages/easybuild/easyconfigs
== 2018-01-12 17:57:36,511 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/gitdb2-2.0.3-py2.7.egg/gitdb/ext/smmap/easybuild/easyconfigs
== 2018-01-12 17:57:36,511 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /gpfs2/well/rescomp/eb/software/EasyBuild/3.5.0/easybuild/easyconfigs
== 2018-01-12 17:57:36,531 filetools.py:1107 INFO Creating directory /well/rescomp/eb/sources/h/HPL (parents: True, set_gid: False, sticky: False)
== 2018-01-12 17:57:36,532 easyblock.py:714 DEBUG Trying to download file hpl-2.2.tar.gz from http://www.netlib.org/benchmark/hpl/hpl-2.2.tar.gz to /well/rescomp/eb/sources/h/HPL/hpl-2.2.tar.gz ...
== 2018-01-12 17:57:36,532 filetools.py:443 DEBUG Trying to download hpl-2.2.tar.gz from http://www.netlib.org/benchmark/hpl/hpl-2.2.tar.gz to /well/rescomp/eb/sources/h/HPL/hpl-2.2.tar.gz
== 2018-01-12 17:57:36,533 filetools.py:450 DEBUG Using timeout of 10 seconds for initiating download
== 2018-01-12 17:57:36,533 filetools.py:1135 DEBUG Not creating existing path /well/rescomp/eb/sources/h/HPL
== 2018-01-12 17:57:36,734 filetools.py:468 DEBUG response code for given url http://www.netlib.org/benchmark/hpl/hpl-2.2.tar.gz: 200
== 2018-01-12 17:57:37,247 filetools.py:1135 DEBUG Not creating existing path /well/rescomp/eb/sources/h/HPL
== 2018-01-12 17:57:37,250 filetools.py:470 INFO Downloaded file hpl-2.2.tar.gz from url http://www.netlib.org/benchmark/hpl/hpl-2.2.tar.gz to /well/rescomp/eb/sources/h/HPL/hpl-2.2.tar.gz
== 2018-01-12 17:57:37,251 filetools.py:490 INFO Successful download of file hpl-2.2.tar.gz from url http://www.netlib.org/benchmark/hpl/hpl-2.2.tar.gz to path /well/rescomp/eb/sources/h/HPL/hpl-2.2.tar.gz
== 2018-01-12 17:57:37,251 easyblock.py:727 INFO Successfully downloaded source file hpl-2.2.tar.gz from http://www.netlib.org/benchmark/hpl/hpl-2.2.tar.gz
== 2018-01-12 17:57:37,251 easyblock.py:362 DEBUG File /well/rescomp/eb/sources/h/HPL/hpl-2.2.tar.gz found for source hpl-2.2.tar.gz
== 2018-01-12 17:57:37,252 easyblock.py:374 INFO Added sources: [{'path': '/well/rescomp/eb/sources/h/HPL/hpl-2.2.tar.gz', 'cmd': None, 'finalpath': '/dev/shm/HPL/2.2/foss-2018a', 'name': 'hpl-2.2.tar.gz', 'checksum': 'ac7534163a09e21a5fa763e4e16dfc119bc84043f6e6a807aba666518f8df440'}]
== 2018-01-12 17:57:37,253 filetools.py:343 INFO Command eb found at /well/rescomp/eb/software/EasyBuild/3.5.0/bin/eb
== 2018-01-12 17:57:37,253 tools.py:263 DEBUG Also considering installation prefix /gpfs2/well/rescomp/eb/software/EasyBuild/3.5.0...
== 2018-01-12 17:57:37,254 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /gpfs0/users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs
== 2018-01-12 17:57:37,254 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs
== 2018-01-12 17:57:37,254 tools.py:272 DEBUG Added /users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2018-01-12 17:57:37,254 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/ebfiles_repo/easybuild/easyconfigs
== 2018-01-12 17:57:37,255 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs/easybuild/easyconfigs
== 2018-01-12 17:57:37,255 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-sUGKFn/files_pr5577/easybuild/easyconfigs
== 2018-01-12 17:57:37,255 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/GitPython-2.1.7-py2.7.egg/git/ext/gitdb/easybuild/easyconfigs
== 2018-01-12 17:57:37,255 tools.py:268 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs
== 2018-01-12 17:57:37,255 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/setuptools-18.1-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,255 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/ecdsa-0.13-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,256 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/paramiko-1.15.2-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,256 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/prettytable-0.7.2-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,256 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/pyCLI-devel-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,256 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/SQLAlchemy-1.0.8-py2.7-linux-x86_64.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,256 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/parsedatetime-1.5-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,256 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/boto-2.38.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,257 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/pip-7.1.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,257 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/Babel-2.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,257 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/simplejson-3.8.0-py2.7-linux-x86_64.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,257 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/requests-2.7.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,257 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/iso8601-0.1.10-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,257 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/argparse-1.3.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,258 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/six-1.9.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,258 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/gc3pie-2.4.2-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,258 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_install-0.10.26-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,258 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,258 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_framework-3.5.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,258 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyblocks-3.5.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,259 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,259 tools.py:272 DEBUG Added /well/rescomp/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild_easyconfigs-3.5.0-py2.7.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2018-01-12 17:57:37,259 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/GitPython-2.1.7-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,259 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/gitdb2-2.0.3-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,259 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/smmap2-2.0.3-py2.7.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,259 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/site-packages/numpy-1.11.0-py2.7-linux-x86_64.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,260 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/site-packages/pysam-0.9.0-py2.7-linux-x86_64.egg/easybuild/easyconfigs
== 2018-01-12 17:57:37,260 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib64/python2.7/site-packages/easybuild/easyconfigs
== 2018-01-12 17:57:37,260 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib/python2.7/site-packages/easybuild/easyconfigs
== 2018-01-12 17:57:37,260 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.5.0/lib/python2.7/site-packages/easybuild/easyconfigs
== 2018-01-12 17:57:37,260 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python27.zip/easybuild/easyconfigs
== 2018-01-12 17:57:37,260 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/easybuild/easyconfigs
== 2018-01-12 17:57:37,261 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/plat-linux2/easybuild/easyconfigs
== 2018-01-12 17:57:37,261 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/lib-tk/easybuild/easyconfigs
== 2018-01-12 17:57:37,261 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/lib-old/easybuild/easyconfigs
== 2018-01-12 17:57:37,261 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/lib-dynload/easybuild/easyconfigs
== 2018-01-12 17:57:37,261 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/easybuild/easyconfigs
== 2018-01-12 17:57:37,261 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /apps/well/python/2.7.11/lib/python2.7/site-packages/easybuild/easyconfigs
== 2018-01-12 17:57:37,261 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/GC3Pie/2.4.2/lib64/python2.7/site-packages/easybuild/easyconfigs
== 2018-01-12 17:57:37,262 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/gitdb2-2.0.3-py2.7.egg/gitdb/ext/smmap/easybuild/easyconfigs
== 2018-01-12 17:57:37,262 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /gpfs2/well/rescomp/eb/software/EasyBuild/3.5.0/easybuild/easyconfigs
== 2018-01-12 17:57:37,262 easyblock.py:646 INFO Found file HPL_parallel-make.patch at /tmp/eb-sUGKFn/files_pr5577/h/HPL/HPL_parallel-make.patch
== 2018-01-12 17:57:37,262 easyblock.py:415 DEBUG File /tmp/eb-sUGKFn/files_pr5577/h/HPL/HPL_parallel-make.patch found for patch HPL_parallel-make.patch
== 2018-01-12 17:57:37,262 easyblock.py:440 INFO Added patches: [{'path': '/tmp/eb-sUGKFn/files_pr5577/h/HPL/HPL_parallel-make.patch', 'name': 'HPL_parallel-make.patch', 'checksum': '2a5bf9c4f328049828ddecec7ba3f05a9e25d236f4212747c53bd22fea80c5e6'}]
== 2018-01-12 17:57:37,262 filetools.py:652 DEBUG Using blocksize 16777216 for calculating the checksum
== 2018-01-12 17:57:37,264 easyblock.py:1608 INFO md5 checksum for /well/rescomp/eb/sources/h/HPL/hpl-2.2.tar.gz: 0eb19e787c3dc8f4058db22c9e0c5320
== 2018-01-12 17:57:37,264 filetools.py:652 DEBUG Using blocksize 16777216 for calculating the checksum
== 2018-01-12 17:57:37,267 easyblock.py:1608 INFO sha256 checksum for /well/rescomp/eb/sources/h/HPL/hpl-2.2.tar.gz: ac7534163a09e21a5fa763e4e16dfc119bc84043f6e6a807aba666518f8df440
== 2018-01-12 17:57:37,267 filetools.py:652 DEBUG Using blocksize 16777216 for calculating the checksum
== 2018-01-12 17:57:37,268 easyblock.py:1608 INFO md5 checksum for /tmp/eb-sUGKFn/files_pr5577/h/HPL/HPL_parallel-make.patch: 1ea6a64ba93676bbfe0b8f1f2cba02a7
== 2018-01-12 17:57:37,268 filetools.py:652 DEBUG Using blocksize 16777216 for calculating the checksum
== 2018-01-12 17:57:37,268 easyblock.py:1608 INFO sha256 checksum for /tmp/eb-sUGKFn/files_pr5577/h/HPL/HPL_parallel-make.patch: 2a5bf9c4f328049828ddecec7ba3f05a9e25d236f4212747c53bd22fea80c5e6
== 2018-01-12 17:57:37,268 easyconfig.py:1676 DEBUG Determining full module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f677b9bf1d0> (force_visible: False)
== 2018-01-12 17:57:37,268 easyconfig.py:1656 DEBUG No alternative software name specified to determine module name with
== 2018-01-12 17:57:37,268 utilities.py:103 DEBUG Module name HPL/2.2-foss-2018a validated
== 2018-01-12 17:57:37,269 easyconfig.py:1683 DEBUG Obtained valid full module name HPL/2.2-foss-2018a
== 2018-01-12 17:57:37,269 config.py:460 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /well/rescomp/eb/modules
== 2018-01-12 17:57:37,269 easyblock.py:1641 INFO Checking dirs that need to be created: ['/well/rescomp/eb/software/HPL/2.2-foss-2018a', '/well/rescomp/eb/modules/all/HPL', '/well/rescomp/eb/modules/tools/HPL']
== 2018-01-12 17:57:37,269 filetools.py:1107 INFO Creating directory /well/rescomp/eb/software/HPL/2.2-foss-2018a (parents: True, set_gid: False, sticky: False)
== 2018-01-12 17:57:37,270 filetools.py:1107 INFO Creating directory /well/rescomp/eb/modules/all/HPL (parents: True, set_gid: False, sticky: False)
== 2018-01-12 17:57:37,277 filetools.py:1107 INFO Creating directory /well/rescomp/eb/modules/tools/HPL (parents: True, set_gid: False, sticky: False)
== 2018-01-12 17:57:37,277 easyblock.py:2438 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False
== 2018-01-12 17:57:37,278 build_log.py:233 INFO creating build dir, resetting environment...
== 2018-01-12 17:57:37,278 easyblock.py:2446 INFO Starting ready step
== 2018-01-12 17:57:37,278 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f677b9bf1d0>
== 2018-01-12 17:57:37,278 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2018-01-12 17:57:37,279 templates.py:219 DEBUG name: github_account, config: None
== 2018-01-12 17:57:37,279 templates.py:219 DEBUG name: name, config: HPL
== 2018-01-12 17:57:37,279 templates.py:219 DEBUG name: version, config: 2.2
== 2018-01-12 17:57:37,279 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-01-12 17:57:37,280 templates.py:219 DEBUG name: versionprefix, config:
== 2018-01-12 17:57:37,280 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f677b9bf1d0>
== 2018-01-12 17:57:37,280 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2018-01-12 17:57:37,280 templates.py:219 DEBUG name: github_account, config: None
== 2018-01-12 17:57:37,281 templates.py:219 DEBUG name: name, config: HPL
== 2018-01-12 17:57:37,281 templates.py:219 DEBUG name: version, config: 2.2
== 2018-01-12 17:57:37,281 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-01-12 17:57:37,282 templates.py:219 DEBUG name: versionprefix, config:
== 2018-01-12 17:57:37,282 easyblock.py:2452 INFO Running method check_readiness_step part of step ready
== 2018-01-12 17:57:37,282 easyblock.py:1502 DEBUG Desired parallelism specified via 'parallel' build option: None
== 2018-01-12 17:57:37,284 affinity.py:211 DEBUG sched_getaffinity for pid 15154 returned cpuset 0-15
== 2018-01-12 17:57:37,284 run.py:83 DEBUG Using cached value for command 'ulimit -u': ('1024\n', 0)
== 2018-01-12 17:57:37,284 easyblock.py:1505 INFO Setting parallelism: 16
== 2018-01-12 17:57:37,284 modules.py:641 DEBUG Current MODULEPATH: /well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all
== 2018-01-12 17:57:37,285 modules.py:648 DEBUG Changing LD_LIBRARY_PATH from '/well/rescomp/eb/software/GC3Pie/2.4.2/lib' to '/well/rescomp/eb/software/GC3Pie/2.4.2/lib' in environment for module command
== 2018-01-12 17:57:37,285 modules.py:648 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-01-12 17:57:37,285 modules.py:652 DEBUG Running module command '/gpfs0/mgmt/modules/Modules/3.2.10/bin/modulecmd python --terse list' from /tmp/eb-sUGKFn/tmpagIkrT/easybuilders
== 2018-01-12 17:57:37,294 modules.py:658 DEBUG Output of module command '/gpfs0/mgmt/modules/Modules/3.2.10/bin/modulecmd python --terse list': stdout: ; stderr: Currently Loaded Modulefiles:
python/2.7.11
EasyBuild/3.5.0
GC3Pie/2.4.2

== 2018-01-12 17:57:37,295 modules.py:590 DEBUG No checking of module output implemented for EnvironmentModulesC
== 2018-01-12 17:57:37,295 modules.py:695 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/well/rescomp/eb/software/GC3Pie/2.4.2/lib'] to ['/well/rescomp/eb/software/GC3Pie/2.4.2/lib']
== 2018-01-12 17:57:37,296 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /well/rescomp/eb/software/GC3Pie/2.4.2/lib (previous value: '/well/rescomp/eb/software/GC3Pie/2.4.2/lib')
== 2018-01-12 17:57:37,296 modules.py:695 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-01-12 17:57:37,296 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-01-12 17:57:37,296 easyblock.py:1510 WARNING Loaded modules detected: ['python/2.7.11', 'EasyBuild/3.5.0', 'GC3Pie/2.4.2']
== 2018-01-12 17:57:37,297 easyconfig.py:608 DEBUG Dependencies BEFORE filtering: []
== 2018-01-12 17:57:37,297 toolchain.py:376 DEBUG add_dependencies: adding toolchain dependencies []
== 2018-01-12 17:57:37,297 toolchain.py:386 DEBUG add_dependencies: MODULEPATH: /well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all
== 2018-01-12 17:57:37,297 modules.py:422 DEBUG Found cached result for 'module avail' with key '('MODULEPATH=/well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all', 'modulecmd', '')': ['ASE/3.15.0-intel-2017b-Python-2.7.14', 'Autoconf/2.69-GCC-5.4.0-2.26', 'Autoconf/2.69-GCCcore-6.3.0', 'Autoconf/2.69-GCCcore-6.4.0', 'Autoconf/2.69-GCCcore-7.2.0', 'Automake/1.15-GCC-5.4.0-2.26', 'Automake/1.15-GCCcore-6.3.0', 'Automake/1.15.1-GCCcore-6.4.0', 'Automake/1.15.1-GCCcore-7.2.0', 'Autotools/20150215-GCC-5.4.0-2.26', 'Autotools/20150215-GCCcore-6.3.0', 'Autotools/20170619-GCCcore-6.4.0', 'Autotools/20170619-GCCcore-7.2.0', 'BEDTools/2.26.0-intel-2017b', 'BEDTools/2.27.1-intel-2017a', 'BLAST+/2.7.1-intel-2017b-Python-2.7.14', 'BWA/0.7.17-intel-2017b', 'BamTools/2.5.0-intel-2017b', 'Bison/3.0.4', 'Bison/3.0.4-GCCcore-5.4.0', 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== 2018-01-12 17:57:37,298 easyconfig.py:608 DEBUG Dependencies BEFORE filtering: []
== 2018-01-12 17:57:37,298 easyblock.py:2452 INFO Running method make_builddir part of step ready
== 2018-01-12 17:57:37,299 easyblock.py:825 DEBUG Creating the build directory /dev/shm/HPL/2.2/foss-2018a (cleanup: True)
== 2018-01-12 17:57:37,299 filetools.py:1107 INFO Creating directory /dev/shm/HPL/2.2/foss-2018a (parents: True, set_gid: False, sticky: False)
== 2018-01-12 17:57:37,299 easyblock.py:2452 INFO Running method env_reset_changes part of step ready
== 2018-01-12 17:57:37,299 easyblock.py:2452 INFO Running method handle_iterate_opts part of step ready
== 2018-01-12 17:57:37,300 easyblock.py:2438 DEBUG Not skipping source step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False
== 2018-01-12 17:57:37,300 build_log.py:233 INFO unpacking...
== 2018-01-12 17:57:37,300 easyblock.py:2446 INFO Starting source step
== 2018-01-12 17:57:37,300 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f677b9bf1d0>
== 2018-01-12 17:57:37,300 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2018-01-12 17:57:37,301 templates.py:219 DEBUG name: github_account, config: None
== 2018-01-12 17:57:37,301 templates.py:219 DEBUG name: name, config: HPL
== 2018-01-12 17:57:37,301 templates.py:219 DEBUG name: version, config: 2.2
== 2018-01-12 17:57:37,301 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-01-12 17:57:37,301 templates.py:219 DEBUG name: versionprefix, config:
== 2018-01-12 17:57:37,302 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f677b9bf1d0>
== 2018-01-12 17:57:37,302 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2018-01-12 17:57:37,302 templates.py:219 DEBUG name: github_account, config: None
== 2018-01-12 17:57:37,302 templates.py:219 DEBUG name: name, config: HPL
== 2018-01-12 17:57:37,302 templates.py:219 DEBUG name: version, config: 2.2
== 2018-01-12 17:57:37,302 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-01-12 17:57:37,303 templates.py:219 DEBUG name: versionprefix, config:
== 2018-01-12 17:57:37,303 easyblock.py:2452 INFO Running method checksum_step part of step source
== 2018-01-12 17:57:37,303 filetools.py:652 DEBUG Using blocksize 16777216 for calculating the checksum
== 2018-01-12 17:57:37,306 filetools.py:700 DEBUG Computed sha256 checksum for /well/rescomp/eb/sources/h/HPL/hpl-2.2.tar.gz: ac7534163a09e21a5fa763e4e16dfc119bc84043f6e6a807aba666518f8df440 (correct checksum: ac7534163a09e21a5fa763e4e16dfc119bc84043f6e6a807aba666518f8df440)
== 2018-01-12 17:57:37,307 easyblock.py:1655 INFO Checksum verification for /well/rescomp/eb/sources/h/HPL/hpl-2.2.tar.gz using ac7534163a09e21a5fa763e4e16dfc119bc84043f6e6a807aba666518f8df440 passed.
== 2018-01-12 17:57:37,307 filetools.py:652 DEBUG Using blocksize 16777216 for calculating the checksum
== 2018-01-12 17:57:37,307 filetools.py:700 DEBUG Computed sha256 checksum for /tmp/eb-sUGKFn/files_pr5577/h/HPL/HPL_parallel-make.patch: 2a5bf9c4f328049828ddecec7ba3f05a9e25d236f4212747c53bd22fea80c5e6 (correct checksum: 2a5bf9c4f328049828ddecec7ba3f05a9e25d236f4212747c53bd22fea80c5e6)
== 2018-01-12 17:57:37,307 easyblock.py:1655 INFO Checksum verification for /tmp/eb-sUGKFn/files_pr5577/h/HPL/HPL_parallel-make.patch using 2a5bf9c4f328049828ddecec7ba3f05a9e25d236f4212747c53bd22fea80c5e6 passed.
== 2018-01-12 17:57:37,307 easyblock.py:2452 INFO Running method extract_step part of step source
== 2018-01-12 17:57:37,307 easyblock.py:1666 INFO Unpacking source hpl-2.2.tar.gz
== 2018-01-12 17:57:37,308 filetools.py:1135 DEBUG Not creating existing path /dev/shm/HPL/2.2/foss-2018a
== 2018-01-12 17:57:37,308 filetools.py:309 DEBUG Unpacking /well/rescomp/eb/sources/h/HPL/hpl-2.2.tar.gz in directory /dev/shm/HPL/2.2/foss-2018a.
== 2018-01-12 17:57:37,308 run.py:163 DEBUG run_cmd: running cmd tar xzf /well/rescomp/eb/sources/h/HPL/hpl-2.2.tar.gz (in /dev/shm/HPL/2.2/foss-2018a)
== 2018-01-12 17:57:37,308 run.py:183 INFO running cmd: tar xzf /well/rescomp/eb/sources/h/HPL/hpl-2.2.tar.gz
== 2018-01-12 17:57:37,331 run.py:488 DEBUG cmd "tar xzf /well/rescomp/eb/sources/h/HPL/hpl-2.2.tar.gz" exited with exit code 0 and output:

== 2018-01-12 17:57:37,332 run.py:522 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-01-12 17:57:37,332 filetools.py:739 DEBUG Last dir list ['www', 'TUNING', 'TODO', 'testing', 'src', 'setup', 'README', 'man', 'makes', 'Makefile', 'Make.top', 'INSTALL', 'include', 'hpl', 'HISTORY', 'COPYRIGHT', 'BUGS']
== 2018-01-12 17:57:37,332 filetools.py:740 DEBUG Possible new dir /dev/shm/HPL/2.2/foss-2018a/hpl-2.2 found
== 2018-01-12 17:57:37,332 easyblock.py:2438 DEBUG Not skipping patch step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False
== 2018-01-12 17:57:37,332 build_log.py:233 INFO patching...
== 2018-01-12 17:57:37,332 easyblock.py:2446 INFO Starting patch step
== 2018-01-12 17:57:37,333 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f677b9bf1d0>
== 2018-01-12 17:57:37,333 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2018-01-12 17:57:37,333 templates.py:219 DEBUG name: github_account, config: None
== 2018-01-12 17:57:37,333 templates.py:219 DEBUG name: name, config: HPL
== 2018-01-12 17:57:37,333 templates.py:219 DEBUG name: version, config: 2.2
== 2018-01-12 17:57:37,333 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-01-12 17:57:37,334 templates.py:219 DEBUG name: versionprefix, config:
== 2018-01-12 17:57:37,334 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f677b9bf1d0>
== 2018-01-12 17:57:37,334 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2018-01-12 17:57:37,334 templates.py:219 DEBUG name: github_account, config: None
== 2018-01-12 17:57:37,334 templates.py:219 DEBUG name: name, config: HPL
== 2018-01-12 17:57:37,334 templates.py:219 DEBUG name: version, config: 2.2
== 2018-01-12 17:57:37,334 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-01-12 17:57:37,334 templates.py:219 DEBUG name: versionprefix, config:
== 2018-01-12 17:57:37,335 easyblock.py:2452 INFO Running method patch_step part of step patch
== 2018-01-12 17:57:37,335 easyblock.py:1678 INFO Applying patch HPL_parallel-make.patch
== 2018-01-12 17:57:37,335 easyblock.py:1691 DEBUG Source index: 0; patch level: None; source path suffix: ; copy patch: <module 'copy' from '/apps/well/python/2.7.11/lib/python2.7/copy.pyo'>
== 2018-01-12 17:57:37,335 easyblock.py:1696 DEBUG Determine begin path for patch HPL_parallel-make.patch: /dev/shm/HPL/2.2/foss-2018a/hpl-2.2
== 2018-01-12 17:57:37,335 easyblock.py:1705 DEBUG Applying patch {'path': '/tmp/eb-sUGKFn/files_pr5577/h/HPL/HPL_parallel-make.patch', 'md5': '1ea6a64ba93676bbfe0b8f1f2cba02a7', 'name': 'HPL_parallel-make.patch', 'sha256': '2a5bf9c4f328049828ddecec7ba3f05a9e25d236f4212747c53bd22fea80c5e6', 'checksum': '2a5bf9c4f328049828ddecec7ba3f05a9e25d236f4212747c53bd22fea80c5e6'} in path /dev/shm/HPL/2.2/foss-2018a/hpl-2.2
== 2018-01-12 17:57:37,336 filetools.py:912 DEBUG Guessed patch level 0 for patch /tmp/eb-sUGKFn/files_pr5577/h/HPL/HPL_parallel-make.patch
== 2018-01-12 17:57:37,336 run.py:163 DEBUG run_cmd: running cmd patch -b -p0 -i /tmp/eb-sUGKFn/files_pr5577/h/HPL/HPL_parallel-make.patch (in /dev/shm/HPL/2.2/foss-2018a/hpl-2.2)
== 2018-01-12 17:57:37,336 run.py:183 INFO running cmd: patch -b -p0 -i /tmp/eb-sUGKFn/files_pr5577/h/HPL/HPL_parallel-make.patch
== 2018-01-12 17:57:37,345 run.py:488 DEBUG cmd "patch -b -p0 -i /tmp/eb-sUGKFn/files_pr5577/h/HPL/HPL_parallel-make.patch" exited with exit code 0 and output:
patching file Makefile

== 2018-01-12 17:57:37,345 run.py:522 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2018-01-12 17:57:37,346 easyblock.py:2438 DEBUG Not skipping prepare step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False
== 2018-01-12 17:57:37,346 build_log.py:233 INFO preparing...
== 2018-01-12 17:57:37,346 easyblock.py:2446 INFO Starting prepare step
== 2018-01-12 17:57:37,346 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f677b9bf1d0>
== 2018-01-12 17:57:37,346 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2018-01-12 17:57:37,346 templates.py:219 DEBUG name: github_account, config: None
== 2018-01-12 17:57:37,347 templates.py:219 DEBUG name: name, config: HPL
== 2018-01-12 17:57:37,347 templates.py:219 DEBUG name: version, config: 2.2
== 2018-01-12 17:57:37,347 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-01-12 17:57:37,347 templates.py:219 DEBUG name: versionprefix, config:
== 2018-01-12 17:57:37,347 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7f677b9bf1d0>
== 2018-01-12 17:57:37,347 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2018-01-12 17:57:37,347 templates.py:219 DEBUG name: github_account, config: None
== 2018-01-12 17:57:37,347 templates.py:219 DEBUG name: name, config: HPL
== 2018-01-12 17:57:37,348 templates.py:219 DEBUG name: version, config: 2.2
== 2018-01-12 17:57:37,348 templates.py:219 DEBUG name: versionsuffix, config:
== 2018-01-12 17:57:37,348 templates.py:219 DEBUG name: versionprefix, config:
== 2018-01-12 17:57:37,348 easyblock.py:2452 INFO Running method prepare_step part of step prepare
== 2018-01-12 17:57:37,348 modules.py:641 DEBUG Current MODULEPATH: /well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all
== 2018-01-12 17:57:37,348 modules.py:648 DEBUG Changing LD_LIBRARY_PATH from '/well/rescomp/eb/software/GC3Pie/2.4.2/lib' to '/well/rescomp/eb/software/GC3Pie/2.4.2/lib' in environment for module command
== 2018-01-12 17:57:37,349 modules.py:648 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-01-12 17:57:37,349 modules.py:652 DEBUG Running module command '/gpfs0/mgmt/modules/Modules/3.2.10/bin/modulecmd python show foss/2018a' from /dev/shm/HPL/2.2/foss-2018a/hpl-2.2
== 2018-01-12 17:57:37,359 modules.py:658 DEBUG Output of module command '/gpfs0/mgmt/modules/Modules/3.2.10/bin/modulecmd python show foss/2018a': stdout: ; stderr: ModuleCmd_Display.c(151):ERROR:105: Unable to locate a modulefile for 'foss/2018a'


== 2018-01-12 17:57:37,360 modules.py:590 DEBUG No checking of module output implemented for EnvironmentModulesC
== 2018-01-12 17:57:37,360 modules.py:546 DEBUG Cached result for 'module show foss/2018a' with key '('MODULEPATH=/well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all', 'modulecmd', 'foss/2018a')': ModuleCmd_Display.c(151):ERROR:105: Unable to locate a modulefile for 'foss/2018a'


== 2018-01-12 17:57:37,363 build_log.py:158 ERROR EasyBuild crashed with an error (at ?:124 in __init__): No module found for toolchain: foss/2018a (at easybuild/tools/toolchain/toolchain.py:568 in _load_modules)
== 2018-01-12 17:57:37,364 easyblock.py:2685 WARNING build failed (first 300 chars): No module found for toolchain: foss/2018a
== 2018-01-12 17:57:37,364 easyblock.py:279 INFO Closing log for application name HPL version 2.2