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verdurin/poretools-0.6.0-intel-2018a-Python-2.7.14_partial.log

Created June 18, 2018 18:49
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(partial) EasyBuild log for failed build of /tmp/eb-69H7N1/files_pr6467/p/poretools/poretools-0.6.0-intel-2018a-Python-2.7.14.eb (PR #6467)
Raw
poretools-0.6.0-intel-2018a-Python-2.7.14_partial.log
== 2018-06-18 19:49:42,777 easyblock.py:266 INFO This is EasyBuild 3.6.1 (framework: 3.6.1, easyblocks: 3.6.1) on host rescomp2.
== 2018-06-18 19:49:42,777 easyblock.py:272 INFO This is easyblock PythonPackage from module easybuild.easyblocks.generic.pythonpackage (/gpfs2/well/rescomp/eb/software/EasyBuild/3.6.1/lib/python2.7/site-packages/easybuild_easyblocks-3.6.1-py2.7.egg/easybuild/easyblocks/generic/pythonpackage.pyo)
== 2018-06-18 19:49:42,778 easyblock.py:816 INFO Build dir set to /dev/shm/poretools/0.6.0/intel-2018a-Python-2.7.14
== 2018-06-18 19:49:42,778 config.py:486 DEBUG software install path as specified by 'installpath' and 'subdir_software': /well/rescomp/eb/software
== 2018-06-18 19:49:42,778 easyconfig.py:1692 DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fd8854621d0>
== 2018-06-18 19:49:42,778 easyconfig.py:1698 DEBUG Obtained subdir poretools/0.6.0-intel-2018a-Python-2.7.14
== 2018-06-18 19:49:42,778 easyblock.py:857 INFO Software install dir set to /well/rescomp/eb/software/poretools/0.6.0-intel-2018a-Python-2.7.14
== 2018-06-18 19:49:42,778 config.py:486 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /well/rescomp/eb/modules
== 2018-06-18 19:49:42,778 easyblock.py:862 INFO Module install dir set to /well/rescomp/eb/modules/all
== 2018-06-18 19:49:42,779 easyblock.py:251 INFO Init completed for application name poretools version 0.6.0
== 2018-06-18 19:49:42,779 pythonpackage.py:224 INFO Using default value for expected module name (lowercase software name): 'poretools'
== 2018-06-18 19:49:42,779 pythonpackage.py:281 DEBUG Using '%(python)s setup.py %(install_target)s --prefix=%(prefix)s %(installopts)s' as install command
== 2018-06-18 19:49:42,779 easyblock.py:2752 INFO Obtained application instance of for poretools (easyblock: PythonPackage)
== 2018-06-18 19:49:42,779 easyblock.py:2765 DEBUG Skip set to False
== 2018-06-18 19:49:42,779 build_log.py:233 INFO building and installing poretools/0.6.0-intel-2018a-Python-2.7.14...
== 2018-06-18 19:49:42,780 easyblock.py:2522 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False
== 2018-06-18 19:49:42,780 build_log.py:233 INFO fetching files...
== 2018-06-18 19:49:42,780 easyblock.py:2530 INFO Starting fetch step
== 2018-06-18 19:49:42,780 templates.py:153 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fd8854621d0>
== 2018-06-18 19:49:42,780 templates.py:177 DEBUG version found in easyconfig is 0.6.0
== 2018-06-18 19:49:42,780 templates.py:221 DEBUG name: github_account, config: None
== 2018-06-18 19:49:42,780 templates.py:221 DEBUG name: name, config: poretools
== 2018-06-18 19:49:42,781 templates.py:221 DEBUG name: version, config: 0.6.0
== 2018-06-18 19:49:42,781 templates.py:221 DEBUG name: versionsuffix, config: -Python-%(pyver)s
== 2018-06-18 19:49:42,781 templates.py:221 DEBUG name: versionprefix, config:
== 2018-06-18 19:49:42,781 templates.py:153 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fd8854621d0>
== 2018-06-18 19:49:42,781 templates.py:177 DEBUG version found in easyconfig is 0.6.0
== 2018-06-18 19:49:42,781 templates.py:221 DEBUG name: github_account, config: None
== 2018-06-18 19:49:42,781 templates.py:221 DEBUG name: name, config: poretools
== 2018-06-18 19:49:42,781 templates.py:221 DEBUG name: version, config: 0.6.0
== 2018-06-18 19:49:42,782 templates.py:221 DEBUG name: versionsuffix, config: -Python-%(pyver)s
== 2018-06-18 19:49:42,782 templates.py:221 DEBUG name: versionprefix, config:
== 2018-06-18 19:49:42,782 easyblock.py:2536 INFO Running method fetch_step part of step fetch
== 2018-06-18 19:49:42,782 easyblock.py:1579 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2018-06-18 19:49:42,782 filetools.py:343 INFO Command eb found at /well/rescomp/eb/software/EasyBuild/3.6.1/bin/eb
== 2018-06-18 19:49:42,783 tools.py:263 DEBUG Also considering installation prefix /gpfs2/well/rescomp/eb/software/EasyBuild/3.6.1...
== 2018-06-18 19:49:42,783 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /gpfs0/users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs
== 2018-06-18 19:49:42,783 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs
== 2018-06-18 19:49:42,783 tools.py:272 DEBUG Added /users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2018-06-18 19:49:42,783 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/ebfiles_repo/easybuild/easyconfigs
== 2018-06-18 19:49:42,783 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.6.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.1-py2.7.egg/easybuild/easyconfigs/easybuild/easyconfigs
== 2018-06-18 19:49:42,783 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-69H7N1/files_pr6467/easybuild/easyconfigs
== 2018-06-18 19:49:42,784 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/GitPython-2.1.7-py2.7.egg/git/ext/gitdb/easybuild/easyconfigs
== 2018-06-18 19:49:42,784 tools.py:268 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs
== 2018-06-18 19:49:42,784 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.6.1/lib/python2.7/site-packages/vsc_install-0.11.1-py2.7.egg/easybuild/easyconfigs
== 2018-06-18 19:49:42,784 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.6.1/lib/python2.7/site-packages/vsc_base-2.7.2-py2.7.egg/easybuild/easyconfigs
== 2018-06-18 19:49:42,784 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.6.1/lib/python2.7/site-packages/easybuild_framework-3.6.1-py2.7.egg/easybuild/easyconfigs
== 2018-06-18 19:49:42,784 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.6.1/lib/python2.7/site-packages/easybuild_easyblocks-3.6.1-py2.7.egg/easybuild/easyconfigs
== 2018-06-18 19:49:42,784 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.6.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.1-py2.7.egg/easybuild/easyconfigs
== 2018-06-18 19:49:42,785 tools.py:272 DEBUG Added /well/rescomp/eb/software/EasyBuild/3.6.1/lib/python2.7/site-packages/easybuild_easyconfigs-3.6.1-py2.7.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2018-06-18 19:49:42,785 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/GitPython-2.1.7-py2.7.egg/easybuild/easyconfigs
== 2018-06-18 19:49:42,785 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/gitdb2-2.0.3-py2.7.egg/easybuild/easyconfigs
== 2018-06-18 19:49:42,785 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/smmap2-2.0.3-py2.7.egg/easybuild/easyconfigs
== 2018-06-18 19:49:42,785 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /well/rescomp/eb/software/EasyBuild/3.6.1/lib/python2.7/site-packages/easybuild/easyconfigs
== 2018-06-18 19:49:42,785 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/anaconda2/lib/python27.zip/easybuild/easyconfigs
== 2018-06-18 19:49:42,785 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/anaconda2/lib/python2.7/easybuild/easyconfigs
== 2018-06-18 19:49:42,786 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/anaconda2/lib/python2.7/plat-linux2/easybuild/easyconfigs
== 2018-06-18 19:49:42,786 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/anaconda2/lib/python2.7/lib-tk/easybuild/easyconfigs
== 2018-06-18 19:49:42,786 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/anaconda2/lib/python2.7/lib-old/easybuild/easyconfigs
== 2018-06-18 19:49:42,786 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/anaconda2/lib/python2.7/lib-dynload/easybuild/easyconfigs
== 2018-06-18 19:49:42,786 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/easybuild/easyconfigs
== 2018-06-18 19:49:42,786 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/anaconda2/lib/python2.7/site-packages/easybuild/easyconfigs
== 2018-06-18 19:49:42,786 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /users/rescomp/adamh/.local/lib/python2.7/site-packages/gitdb2-2.0.3-py2.7.egg/gitdb/ext/smmap/easybuild/easyconfigs
== 2018-06-18 19:49:42,787 tools.py:268 DEBUG Checking for easybuild/easyconfigs at /gpfs2/well/rescomp/eb/software/EasyBuild/3.6.1/easybuild/easyconfigs
== 2018-06-18 19:49:42,791 filetools.py:1108 INFO Creating directory /well/rescomp/eb/sources/p/poretools (parents: True, set_gid: False, sticky: False)
== 2018-06-18 19:49:42,791 filetools.py:382 DEBUG Checking whether 'https://pypi.python.org/packages/source/p/poretools/poretools-0.6.0.tar.gz' is an alternate PyPI URL using pattern '/packages/[a-f0-9]{2}/[a-f0-9]{2}/[a-f0-9]{60}/[^/]+$'...: False
== 2018-06-18 19:49:42,791 filetools.py:444 DEBUG Trying to download poretools_urls.html from https://pypi.python.org/simple/poretools to /tmp/eb-69H7N1/tmpKmjIP_/poretools_urls.html
== 2018-06-18 19:49:42,792 filetools.py:451 DEBUG Using timeout of 10 seconds for initiating download
== 2018-06-18 19:49:42,792 filetools.py:1136 DEBUG Not creating existing path /tmp/eb-69H7N1/tmpKmjIP_
== 2018-06-18 19:49:43,061 filetools.py:469 DEBUG response code for given url https://pypi.python.org/simple/poretools: 200
== 2018-06-18 19:49:43,063 filetools.py:1136 DEBUG Not creating existing path /tmp/eb-69H7N1/tmpKmjIP_
== 2018-06-18 19:49:43,063 filetools.py:471 INFO Downloaded file poretools_urls.html from url https://pypi.python.org/simple/poretools to /tmp/eb-69H7N1/tmpKmjIP_/poretools_urls.html
== 2018-06-18 19:49:43,064 filetools.py:491 INFO Successful download of file poretools_urls.html from url https://pypi.python.org/simple/poretools to path /tmp/eb-69H7N1/tmpKmjIP_/poretools_urls.html
== 2018-06-18 19:49:43,065 easyblock.py:702 DEBUG Using alternate PyPI URL for https://pypi.python.org/packages/source/p/poretools/poretools-0.6.0.tar.gz: https://pypi.python.org/packages/57/28/b680b8515e4d02b583211c2287fd9e49700dc6cfa0b2b6d6a11f54d0b8a1/poretools-0.6.0.tar.gz
== 2018-06-18 19:49:43,065 easyblock.py:715 DEBUG Trying to download file poretools-0.6.0.tar.gz from https://pypi.python.org/packages/57/28/b680b8515e4d02b583211c2287fd9e49700dc6cfa0b2b6d6a11f54d0b8a1/poretools-0.6.0.tar.gz to /well/rescomp/eb/sources/p/poretools/poretools-0.6.0.tar.gz ...
== 2018-06-18 19:49:43,065 filetools.py:444 DEBUG Trying to download poretools-0.6.0.tar.gz from https://pypi.python.org/packages/57/28/b680b8515e4d02b583211c2287fd9e49700dc6cfa0b2b6d6a11f54d0b8a1/poretools-0.6.0.tar.gz to /well/rescomp/eb/sources/p/poretools/poretools-0.6.0.tar.gz
== 2018-06-18 19:49:43,065 filetools.py:451 DEBUG Using timeout of 10 seconds for initiating download
== 2018-06-18 19:49:43,065 filetools.py:1136 DEBUG Not creating existing path /well/rescomp/eb/sources/p/poretools
== 2018-06-18 19:49:43,267 filetools.py:469 DEBUG response code for given url https://pypi.python.org/packages/57/28/b680b8515e4d02b583211c2287fd9e49700dc6cfa0b2b6d6a11f54d0b8a1/poretools-0.6.0.tar.gz: 200
== 2018-06-18 19:49:43,272 filetools.py:1136 DEBUG Not creating existing path /well/rescomp/eb/sources/p/poretools
== 2018-06-18 19:49:43,273 filetools.py:471 INFO Downloaded file poretools-0.6.0.tar.gz from url https://pypi.python.org/packages/57/28/b680b8515e4d02b583211c2287fd9e49700dc6cfa0b2b6d6a11f54d0b8a1/poretools-0.6.0.tar.gz to /well/rescomp/eb/sources/p/poretools/poretools-0.6.0.tar.gz
== 2018-06-18 19:49:43,273 filetools.py:491 INFO Successful download of file poretools-0.6.0.tar.gz from url https://pypi.python.org/packages/57/28/b680b8515e4d02b583211c2287fd9e49700dc6cfa0b2b6d6a11f54d0b8a1/poretools-0.6.0.tar.gz to path /well/rescomp/eb/sources/p/poretools/poretools-0.6.0.tar.gz
== 2018-06-18 19:49:43,273 easyblock.py:728 INFO Successfully downloaded source file poretools-0.6.0.tar.gz from https://pypi.python.org/packages/57/28/b680b8515e4d02b583211c2287fd9e49700dc6cfa0b2b6d6a11f54d0b8a1/poretools-0.6.0.tar.gz
== 2018-06-18 19:49:43,273 easyblock.py:364 DEBUG File /well/rescomp/eb/sources/p/poretools/poretools-0.6.0.tar.gz found for source poretools-0.6.0.tar.gz
== 2018-06-18 19:49:43,273 easyblock.py:376 INFO Added sources: [{'path': '/well/rescomp/eb/sources/p/poretools/poretools-0.6.0.tar.gz', 'cmd': None, 'finalpath': '/dev/shm/poretools/0.6.0/intel-2018a-Python-2.7.14', 'name': 'poretools-0.6.0.tar.gz', 'checksum': '4d22e45f1e080fb5131dad47c72391f37d08abe9e70b7266ca6ef971c9ec0fb2'}]
== 2018-06-18 19:49:43,274 easyblock.py:1620 INFO no patches provided
== 2018-06-18 19:49:43,274 filetools.py:653 DEBUG Using blocksize 16777216 for calculating the checksum
== 2018-06-18 19:49:43,274 easyblock.py:1630 INFO md5 checksum for /well/rescomp/eb/sources/p/poretools/poretools-0.6.0.tar.gz: 8bc38dd5a08f9b34ec4ef19a6805f6fd
== 2018-06-18 19:49:43,274 filetools.py:653 DEBUG Using blocksize 16777216 for calculating the checksum
== 2018-06-18 19:49:43,274 easyblock.py:1630 INFO sha256 checksum for /well/rescomp/eb/sources/p/poretools/poretools-0.6.0.tar.gz: 4d22e45f1e080fb5131dad47c72391f37d08abe9e70b7266ca6ef971c9ec0fb2
== 2018-06-18 19:49:43,274 easyconfig.py:1680 DEBUG Determining full module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fd8854621d0> (force_visible: False)
== 2018-06-18 19:49:43,275 easyconfig.py:1660 DEBUG No alternative software name specified to determine module name with
== 2018-06-18 19:49:43,275 utilities.py:103 DEBUG Module name poretools/0.6.0-intel-2018a-Python-2.7.14 validated
== 2018-06-18 19:49:43,275 easyconfig.py:1687 DEBUG Obtained valid full module name poretools/0.6.0-intel-2018a-Python-2.7.14
== 2018-06-18 19:49:43,275 config.py:486 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /well/rescomp/eb/modules
== 2018-06-18 19:49:43,275 easyblock.py:1663 INFO Checking dirs that need to be created: ['/well/rescomp/eb/software/poretools/0.6.0-intel-2018a-Python-2.7.14', '/well/rescomp/eb/modules/all/poretools', '/well/rescomp/eb/modules/bio/poretools']
== 2018-06-18 19:49:43,275 filetools.py:1108 INFO Creating directory /well/rescomp/eb/software/poretools/0.6.0-intel-2018a-Python-2.7.14 (parents: True, set_gid: False, sticky: False)
== 2018-06-18 19:49:43,276 filetools.py:1108 INFO Creating directory /well/rescomp/eb/modules/all/poretools (parents: True, set_gid: False, sticky: False)
== 2018-06-18 19:49:43,276 filetools.py:1108 INFO Creating directory /well/rescomp/eb/modules/bio/poretools (parents: True, set_gid: False, sticky: False)
== 2018-06-18 19:49:43,276 easyblock.py:2522 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False
== 2018-06-18 19:49:43,276 build_log.py:233 INFO creating build dir, resetting environment...
== 2018-06-18 19:49:43,276 easyblock.py:2530 INFO Starting ready step
== 2018-06-18 19:49:43,277 templates.py:153 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fd8854621d0>
== 2018-06-18 19:49:43,277 templates.py:177 DEBUG version found in easyconfig is 0.6.0
== 2018-06-18 19:49:43,277 templates.py:221 DEBUG name: github_account, config: None
== 2018-06-18 19:49:43,277 templates.py:221 DEBUG name: name, config: poretools
== 2018-06-18 19:49:43,277 templates.py:221 DEBUG name: version, config: 0.6.0
== 2018-06-18 19:49:43,277 templates.py:221 DEBUG name: versionsuffix, config: -Python-%(pyver)s
== 2018-06-18 19:49:43,277 templates.py:221 DEBUG name: versionprefix, config:
== 2018-06-18 19:49:43,277 templates.py:153 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x7fd8854621d0>
== 2018-06-18 19:49:43,277 templates.py:177 DEBUG version found in easyconfig is 0.6.0
== 2018-06-18 19:49:43,278 templates.py:221 DEBUG name: github_account, config: None
== 2018-06-18 19:49:43,278 templates.py:221 DEBUG name: name, config: poretools
== 2018-06-18 19:49:43,278 templates.py:221 DEBUG name: version, config: 0.6.0
== 2018-06-18 19:49:43,278 templates.py:221 DEBUG name: versionsuffix, config: -Python-%(pyver)s
== 2018-06-18 19:49:43,278 templates.py:221 DEBUG name: versionprefix, config:
== 2018-06-18 19:49:43,278 easyblock.py:2536 INFO Running method check_readiness_step part of step ready
== 2018-06-18 19:49:43,278 easyblock.py:1516 DEBUG Desired parallelism specified via 'parallel' build option: None
== 2018-06-18 19:49:43,279 affinity.py:211 DEBUG sched_getaffinity for pid 19767 returned cpuset 0-15
== 2018-06-18 19:49:43,279 run.py:84 DEBUG Using cached value for command 'ulimit -u': ('1024\n', 0)
== 2018-06-18 19:49:43,279 easyblock.py:1519 INFO Setting parallelism: 16
== 2018-06-18 19:49:43,279 modules.py:648 DEBUG Current MODULEPATH: /well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all
== 2018-06-18 19:49:43,279 modules.py:655 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
== 2018-06-18 19:49:43,280 modules.py:655 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2018-06-18 19:49:43,280 modules.py:659 DEBUG Running module command '/gpfs0/mgmt/modules/Modules/3.2.10/bin/modulecmd python --terse list' from /gpfs0/users/rescomp/adamh/src/github/easybuild-easyconfigs/easybuild/easyconfigs
== 2018-06-18 19:49:43,294 modules.py:665 DEBUG Output of module command '/gpfs0/mgmt/modules/Modules/3.2.10/bin/modulecmd python --terse list': stdout: ; stderr: Currently Loaded Modulefiles:
EasyBuild/3.6.1
== 2018-06-18 19:49:43,295 modules.py:605 DEBUG No checking of module output implemented for EnvironmentModulesC
== 2018-06-18 19:49:43,296 modules.py:702 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to []
== 2018-06-18 19:49:43,296 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '')
== 2018-06-18 19:49:43,296 modules.py:702 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2018-06-18 19:49:43,297 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2018-06-18 19:49:43,297 easyblock.py:1524 WARNING Loaded modules detected: ['EasyBuild/3.6.1']
== 2018-06-18 19:49:43,298 easyconfig.py:607 DEBUG Dependencies BEFORE filtering: [{'external_module_metadata': {}, 'full_mod_name': 'Python/2.7.14-intel-2018a', 'toolchain': {'version': '2018a', 'name': 'intel'}, 'name': 'Python', 'dummy': False, 'short_mod_name': 'Python/2.7.14-intel-2018a', 'external_module': False, 'versionsuffix': '', 'version': '2.7.14', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'h5py/2.7.1-intel-2018a-Python-2.7.14', 'toolchain': {'version': '2018a', 'name': 'intel'}, 'name': 'h5py', 'dummy': False, 'short_mod_name': 'h5py/2.7.1-intel-2018a-Python-2.7.14', 'external_module': False, 'versionsuffix': '-Python-2.7.14', 'version': '2.7.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'matplotlib/2.1.2-intel-2018a-Python-2.7.14', 'toolchain': {'version': '2018a', 'name': 'intel'}, 'name': 'matplotlib', 'dummy': False, 'short_mod_name': 'matplotlib/2.1.2-intel-2018a-Python-2.7.14', 'external_module': False, 'versionsuffix': '-Python-2.7.14', 'version': '2.1.2', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Seaborn/0.8.1-intel-2018a-Python-2.7.14', 'toolchain': {'version': '2018a', 'name': 'intel'}, 'name': 'Seaborn', 'dummy': False, 'short_mod_name': 'Seaborn/0.8.1-intel-2018a-Python-2.7.14', 'external_module': False, 'versionsuffix': '-Python-2.7.14', 'version': '0.8.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}]
== 2018-06-18 19:49:43,298 toolchain.py:376 DEBUG add_dependencies: adding toolchain dependencies [{'external_module_metadata': {}, 'full_mod_name': 'Python/2.7.14-intel-2018a', 'toolchain': {'version': '2018a', 'name': 'intel'}, 'name': 'Python', 'dummy': False, 'short_mod_name': 'Python/2.7.14-intel-2018a', 'external_module': False, 'versionsuffix': '', 'version': '2.7.14', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'h5py/2.7.1-intel-2018a-Python-2.7.14', 'toolchain': {'version': '2018a', 'name': 'intel'}, 'name': 'h5py', 'dummy': False, 'short_mod_name': 'h5py/2.7.1-intel-2018a-Python-2.7.14', 'external_module': False, 'versionsuffix': '-Python-2.7.14', 'version': '2.7.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'matplotlib/2.1.2-intel-2018a-Python-2.7.14', 'toolchain': {'version': '2018a', 'name': 'intel'}, 'name': 'matplotlib', 'dummy': False, 'short_mod_name': 'matplotlib/2.1.2-intel-2018a-Python-2.7.14', 'external_module': False, 'versionsuffix': '-Python-2.7.14', 'version': '2.1.2', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Seaborn/0.8.1-intel-2018a-Python-2.7.14', 'toolchain': {'version': '2018a', 'name': 'intel'}, 'name': 'Seaborn', 'dummy': False, 'short_mod_name': 'Seaborn/0.8.1-intel-2018a-Python-2.7.14', 'external_module': False, 'versionsuffix': '-Python-2.7.14', 'version': '0.8.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}]
== 2018-06-18 19:49:43,299 toolchain.py:386 DEBUG add_dependencies: MODULEPATH: /well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all
== 2018-06-18 19:49:43,299 modules.py:444 DEBUG Found cached result for 'module avail' with key '('MODULEPATH=/well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all', 'modulecmd', '')': ['ASE/3.15.0-intel-2017b-Python-2.7.14', 'Anaconda3/5.1.0', 'Autoconf/2.69-GCC-5.4.0-2.26', 'Autoconf/2.69-GCCcore-5.4.0', 'Autoconf/2.69-GCCcore-6.3.0', 'Autoconf/2.69-GCCcore-6.4.0', 'Autoconf/2.69-GCCcore-7.2.0', 'Automake/1.15-GCC-5.4.0-2.26', 'Automake/1.15-GCCcore-5.4.0', 'Automake/1.15-GCCcore-6.3.0', 'Automake/1.15.1-GCCcore-6.4.0', 'Automake/1.15.1-GCCcore-7.2.0', 'Autotools/20150215-GCC-5.4.0-2.26', 'Autotools/20150215-GCCcore-5.4.0', 'Autotools/20150215-GCCcore-6.3.0', 'Autotools/20170619-GCCcore-6.4.0', 'Autotools/20170619-GCCcore-7.2.0', 'BEDOPS/2.4.32-intel-2018a', 'BEDTools/2.26.0-intel-2017b', 'BEDTools/2.27.1-GCCcore-6.4.0', 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'gettext/0.19.8.1-GCCcore-6.4.0-libxml2-2.9.7', 'gflags/2.1.2-intel-2017a', 'gflags/2.2.1-intel-2017a', 'gimkl/2017b', 'gimpi/2017b', 'git/2.14.1-GCCcore-6.4.0', 'glog/0.3.4-intel-2017a', 'glog/0.3.5-intel-2017a', 'gnuplot/5.0.6-intel-2017a', 'gnuplot/5.2.2-intel-2018a', 'gperf/3.0.4-intel-2017a', 'gperf/3.1-GCCcore-6.4.0', 'gperftools/2.6.3-GCCcore-6.4.0', 'gromacs/2016.4-gcc5.4.0-Anode', 'gromacs/5.1.4-gcc5.4.0', 'gromacs/5.1.4-gcc5.4.0-Anode', 'gromacs/module.gromacs.2016.4-gcc5.4.0-Anode', 'h5py/2.7.1-intel-2017b-Python-2.7.14', 'h5py/2.7.1-intel-2017b-Python-3.6.3', 'h5py/2.7.1-intel-2018a-Python-2.7.14', 'help2man/1.47.4', 'help2man/1.47.4-GCCcore-6.3.0', 'help2man/1.47.4-GCCcore-6.4.0', 'help2man/1.47.4-GCCcore-7.2.0', 'htslib/1.4.1', 'htslib/1.6', 'hwloc/1.11.8-GCCcore-6.4.0', 'hwloc/1.11.8-intel-2017a', 'icc/2017.1.132-GCC-6.3.0-2.27', 'icc/2017.4.196-GCC-6.4.0-2.28', 'icc/2018.1.163-GCC-6.4.0-2.28', 'iccifort/2017.1.132-GCC-6.3.0-2.27', 'iccifort/2017.4.196-GCC-6.4.0-2.28', 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'nanopolish/0.9.2-intel-2018a', 'ncurses/6.0', 'ncurses/6.0-GCC-5.4.0-2.26', 'ncurses/6.0-GCCcore-5.4.0', 'ncurses/6.0-GCCcore-6.3.0', 'ncurses/6.0-GCCcore-6.4.0', 'ncurses/6.0-GCCcore-7.2.0', 'nd2reader/3.0.6-intel-2017b-Python-2.7.14', 'netCDF-Fortran/4.4.4-intel-2017b-HDF5-1.8.19', 'netCDF/4.4.1.1-intel-2017a', 'netCDF/4.4.1.1-intel-2017b-HDF5-1.8.19', 'netCDF/4.5.0-intel-2017b', 'netCDF/4.6.0-intel-2018a', 'nettle/3.3-GCCcore-6.4.0', 'nettle/3.3-intel-2017a', 'nettle/3.4-intel-2018a', 'nodejs/8.9.4-GCCcore-6.4.0', 'numactl/2.0.11-GCCcore-6.3.0', 'numactl/2.0.11-GCCcore-6.4.0', 'numexpr/2.6.4-intel-2017a-Python-3.6.1', 'openmpi/1.10.3', 'openmpi/1.10.3-gcc4.9.3', 'openmpi/1.10.3-gcc5.4.0', 'openmpi/1.10.7-gcc5.4.0', 'openmpi/1.6.5/gcc/4.4.7', 'openslide/3.4.1', 'parallel/20171122-intel-2017b', 'parallel/20180422-intel-2018a', 'phono3py/1.12.5.35-intel-2017b-Python-2.7.14', 'phonopy/1.12.2.20-intel-2017b-Python-2.7.14', 'pixman/0.34.0-GCCcore-6.3.0', 'pixman/0.34.0-GCCcore-6.4.0', 'pkg-config/0.29.1-GCCcore-5.4.0', 'pkg-config/0.29.1-GCCcore-6.3.0', 'pkg-config/0.29.1-intel-2017a', 'pkg-config/0.29.2-GCCcore-6.4.0', 'pkg-config/0.29.2-intel-2017a', 'pkgconfig/1.2.2-intel-2017a-Python-2.7.13', 'pkgconfig/1.2.2-intel-2017a-Python-3.6.1', 'pkgconfig/1.2.2-intel-2017b-Python-2.7.14', 'pkgconfig/1.2.2-intel-2017b-Python-3.6.3', 'pkgconfig/1.3.1-intel-2018a-Python-2.7.14', 'proovread/2.14.1-intel-2017b', 'protobuf-python/3.3.0-intel-2017a-Python-2.7.13', 'protobuf/3.5.1-intel-2017b', 'pyScaf/0.12a4-intel-2017b-Python-2.7.14', 'pybedtools/0.7.10-intel-2017b-Python-2.7.14', 'pypy/5.7.0', 'python/2.7', 'python/2.7.10', 'python/2.7.10-gcc4.9.3', 'python/2.7.10-gcc5.4.0', 'python/2.7.11', 'python/2.7.6', 'python/2.7.7-venv', 'python/2.7.7-venv-unicode', 'python/2.7.8', 'python/3.4.3', 'python/3.4.6-gcc4.8.2', 'python/3.4.7-gcc4.8.2', 'python/3.5.2-gcc5.4.0', 'qrupdate/1.1.2-intel-2017a', 'relion/1.2-gcc4.7.2', 'relion/1.3-3-gcc4.7.2', 'relion/1.3-beta3-gcc4.7.2', 'relion/1.3-compA-gcc4.7.2', 'relion/1.3-gcc4.7.2', 'relion/1.3-relax-1-gcc4.7.2', 'relion/1.3-relax-1.1-gcc4.7.2', 'relion/1.4-fftw-3.3.4-gcc4.7.2', 'relion/1.4-gcc4.7.2', 'relion/1.4-single-fftw-3.3.4-gcc4.7.2', 'relion/1.4-single-gcc4.7.2', 'relion/1.4.a-gcc4.7.2', 'relion/1.4.b-gcc4.7.2', 'relion/1.4b1-gcc4.7.2', 'relion/2.0.3-gcc4.9.3', 'relion/2.0b-20160622-gcc4.9.3', 'relion/2.0b-20160623-gcc4.9.3-cuda7.0', 'relion/2.0b-20161006-gcc4.9.3', 'relion/2.0b-20161006-gcc4.9.3-cuda7.5', 'relion/vlion-20160125-gcc4.7.2', 'relion/vlion-20160314-gcc4.7.2', 'relion/vlion-20160314-single-gcc4.7.2', 'scikit-image/0.13.0-intel-2017a-Python-2.7.13', 'scikit-image/0.13.1-intel-2017b-Python-2.7.14', 'segemehl/0.2.0-intel-2017b', 'snappy/1.1.6-intel-2017a', 'snappy/1.1.7-intel-2017a', 'sparsehash/2.0.3-GCCcore-6.4.0', 'tbb/2018_U1-GCCcore-6.4.0', 'tbb/2018_U2-GCCcore-6.4.0', 'torch/20170221-gcc5.4.0', 'torch/20170221-k80-gcc5.4.0', 'torch/20170221-p100-gcc5.4.0', 'torch/20170221-titan-gcc5.4.0', 'unicycler/20180226', 'util-linux/2.29.2-intel-2017a', 'util-linux/2.31-GCCcore-6.4.0', 'util-linux/2.31.1-GCCcore-6.4.0', 'vsc-base/2.8.1', 'vsc-install/0.11.2', 'vsc-mympirun/4.1.5', 'wget/1.19.4-GCCcore-6.4.0', 'worker/1.6.7-intel-2017a', 'worker/1.6.7-intel-2017b', 'x264/20171217-intel-2017b', 'x265/2.6-intel-2017b', 'xprop/1.2.2-GCCcore-5.4.0', 'xprop/1.2.2-intel-2017a', 'zlib/1.2.11', 'zlib/1.2.11-GCCcore-6.3.0', 'zlib/1.2.11-GCCcore-6.4.0', 'zlib/1.2.11-GCCcore-7.2.0', 'zlib/1.2.8', 'zlib/1.2.8-GCC-5.4.0-2.26', 'zlib/1.2.8-GCCcore-5.4.0']
== 2018-06-18 19:49:43,301 modules.py:557 DEBUG Found cached result for 'module show matplotlib/2.1.2-intel-2018a-Python-2.7.14' with key '('MODULEPATH=/well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all', 'modulecmd', 'matplotlib/2.1.2-intel-2018a-Python-2.7.14')': ModuleCmd_Display.c(151):ERROR:105: Unable to locate a modulefile for 'matplotlib/2.1.2-intel-2018a-Python-2.7.14'
== 2018-06-18 19:49:43,302 modules.py:557 DEBUG Found cached result for 'module show Seaborn/0.8.1-intel-2018a-Python-2.7.14' with key '('MODULEPATH=/well/rescomp/eb/modules/all:/gpfs0/mgmt/modules/Modules/$MODULE_VERSION/modulefiles:/gpfs0/mgmt/modules/Modules/modulefiles:/mgmt/modules/eb/modules/all:/users/rescomp/adamh/.local/easybuild/modules/all', 'modulecmd', 'Seaborn/0.8.1-intel-2018a-Python-2.7.14')': ModuleCmd_Display.c(151):ERROR:105: Unable to locate a modulefile for 'Seaborn/0.8.1-intel-2018a-Python-2.7.14'
== 2018-06-18 19:49:43,305 build_log.py:158 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Missing modules for one or more dependencies: matplotlib/2.1.2-intel-2018a-Python-2.7.14, Seaborn/0.8.1-intel-2018a-Python-2.7.14 (at easybuild/tools/toolchain/toolchain.py:401 in add_dependencies)
== 2018-06-18 19:49:43,305 easyblock.py:2778 WARNING build failed (first 300 chars): Missing modules for one or more dependencies: matplotlib/2.1.2-intel-2018a-Python-2.7.14, Seaborn/0.8.1-intel-2018a-Python-2.7.14
== 2018-06-18 19:49:43,305 easyblock.py:281 INFO Closing log for application name poretools version 0.6.0
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