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Heroku Buildpack R - dplyr Example
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| my_packages = c("dplyr") | |
| install_if_missing = function(p) { | |
| if (p %in% rownames(installed.packages()) == FALSE) { | |
| install.packages(p) | |
| } | |
| else { | |
| cat(paste("Skipping already installed package:", p, "\n")) | |
| } | |
| } | |
| invisible(sapply(my_packages, install_if_missing)) |
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| #!/bin/bash | |
| shopt -s extglob | |
| set -e | |
| heroku create --stack cedar-14 --buildpack https://github.com/virtualstaticvoid/heroku-buildpack-r.git#cedar-14-chroot | |
| git push heroku master | |
| heroku run R --no-save -f /app/prog.R |
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| Initialized empty Git repository in /tmp/tmp.IG2elo2Wbd/.git/ | |
| [master (root-commit) a198866] initial | |
| 4 files changed, 98 insertions(+) | |
| create mode 100644 .gitignore | |
| create mode 100755 init.r | |
| create mode 100755 install | |
| create mode 100644 prog.r | |
| Creating app... done, ⬢ pure-peak-40730, stack is cedar-14 | |
| Setting buildpack to https://github.com/virtualstaticvoid/heroku-buildpack-r.git#cedar-14-chroot... done | |
| https://pure-peak-40730.herokuapp.com/ | https://git.heroku.com/pure-peak-40730.git | |
| Counting objects: 6, done. | |
| Delta compression using up to 8 threads. | |
| Compressing objects: 100% (5/5), done. | |
| Writing objects: 100% (6/6), 1.51 KiB | 0 bytes/s, done. | |
| Total 6 (delta 0), reused 0 (delta 0) | |
| remote: Compressing source files... done. | |
| remote: Building source: | |
| remote: | |
| remote: -----> R Console app detected | |
| remote: -----> Vendoring R 3.3.3 for cedar-14 stack (latest) | |
| remote: Downloading and unpacking R binaries (http://heroku-buildpack-r.s3.amazonaws.com/cedar-14/R-3.3.3-binaries-latest.tar.gz) | |
| remote: -----> Executing init.r script | |
| remote: Installing package into ‘/usr/local/lib/R/site-library’ | |
| remote: (as ‘lib’ is unspecified) | |
| remote: also installing the dependencies ‘assertthat’, ‘tibble’, ‘magrittr’, ‘lazyeval’, ‘DBI’, ‘BH’ | |
| remote: | |
| remote: trying URL 'http://cran.revolutionanalytics.com/src/contrib/assertthat_0.2.0.tar.gz' | |
| remote: Content type 'application/octet-stream' length 11612 bytes (11 KB) | |
| remote: ================================================== | |
| remote: downloaded 11 KB | |
| remote: | |
| remote: trying URL 'http://cran.revolutionanalytics.com/src/contrib/tibble_1.3.0.tar.gz' | |
| remote: Content type 'application/octet-stream' length 58170 bytes (56 KB) | |
| remote: ================================================== | |
| remote: downloaded 56 KB | |
| remote: | |
| remote: trying URL 'http://cran.revolutionanalytics.com/src/contrib/magrittr_1.5.tar.gz' | |
| remote: Content type 'application/octet-stream' length 200504 bytes (195 KB) | |
| remote: ================================================== | |
| remote: downloaded 195 KB | |
| remote: | |
| remote: trying URL 'http://cran.revolutionanalytics.com/src/contrib/lazyeval_0.2.0.tar.gz' | |
| remote: Content type 'application/octet-stream' length 317272 bytes (309 KB) | |
| remote: ================================================== | |
| remote: downloaded 309 KB | |
| remote: | |
| remote: trying URL 'http://cran.revolutionanalytics.com/src/contrib/DBI_0.6-1.tar.gz' | |
| remote: Content type 'application/octet-stream' length 611344 bytes (597 KB) | |
| remote: ================================================== | |
| remote: downloaded 597 KB | |
| remote: | |
| remote: trying URL 'http://cran.revolutionanalytics.com/src/contrib/BH_1.62.0-1.tar.gz' | |
| remote: Content type 'application/octet-stream' length 10181096 bytes (9.7 MB) | |
| remote: ================================================== | |
| remote: downloaded 9.7 MB | |
| remote: | |
| remote: trying URL 'http://cran.revolutionanalytics.com/src/contrib/dplyr_0.5.0.tar.gz' | |
| remote: Content type 'application/octet-stream' length 708476 bytes (691 KB) | |
| remote: ================================================== | |
| remote: downloaded 691 KB | |
| remote: | |
| remote: * installing *source* package ‘assertthat’ ... | |
| remote: ** package ‘assertthat’ successfully unpacked and MD5 sums checked | |
| remote: ** R | |
| remote: ** preparing package for lazy loading | |
| remote: ** help | |
| remote: *** installing help indices | |
| remote: ** building package indices | |
| remote: ** testing if installed package can be loaded | |
| remote: * DONE (assertthat) | |
| remote: * installing *source* package ‘magrittr’ ... | |
| remote: ** package ‘magrittr’ successfully unpacked and MD5 sums checked | |
| remote: ** R | |
| remote: ** inst | |
| remote: ** byte-compile and prepare package for lazy loading | |
| remote: ** help | |
| remote: *** installing help indices | |
| remote: ** building package indices | |
| remote: ** installing vignettes | |
| remote: ** testing if installed package can be loaded | |
| remote: * DONE (magrittr) | |
| remote: * installing *source* package ‘lazyeval’ ... | |
| remote: ** package ‘lazyeval’ successfully unpacked and MD5 sums checked | |
| remote: ** libs | |
| remote: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c expr.c -o expr.o | |
| remote: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c interp.c -o interp.o | |
| remote: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c lazy.c -o lazy.o | |
| remote: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c name.c -o name.o | |
| remote: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o | |
| remote: gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o lazyeval.so expr.o interp.o lazy.o name.o utils.o -L/usr/lib/R/lib -lR | |
| remote: installing to /usr/local/lib/R/site-library/lazyeval/libs | |
| remote: ** R | |
| remote: ** inst | |
| remote: ** preparing package for lazy loading | |
| remote: ** help | |
| remote: *** installing help indices | |
| remote: ** building package indices | |
| remote: ** installing vignettes | |
| remote: ** testing if installed package can be loaded | |
| remote: * DONE (lazyeval) | |
| remote: * installing *source* package ‘DBI’ ... | |
| remote: ** package ‘DBI’ successfully unpacked and MD5 sums checked | |
| remote: ** R | |
| remote: ** inst | |
| remote: ** preparing package for lazy loading | |
| remote: ** help | |
| remote: *** installing help indices | |
| remote: ** building package indices | |
| remote: ** installing vignettes | |
| remote: ** testing if installed package can be loaded | |
| remote: * DONE (DBI) | |
| remote: * installing *source* package ‘BH’ ... | |
| remote: ** package ‘BH’ successfully unpacked and MD5 sums checked | |
| remote: ** inst | |
| remote: ** help | |
| remote: *** installing help indices | |
| remote: ** building package indices | |
| remote: ** testing if installed package can be loaded | |
| remote: * DONE (BH) | |
| remote: * installing *source* package ‘tibble’ ... | |
| remote: ** package ‘tibble’ successfully unpacked and MD5 sums checked | |
| remote: ** libs | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o | |
| remote: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c matrixToDataFrame.cpp -o matrixToDataFrame.o | |
| remote: g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o tibble.so RcppExports.o init.o matrixToDataFrame.o -L/usr/lib/R/lib -lR | |
| remote: installing to /usr/local/lib/R/site-library/tibble/libs | |
| remote: ** R | |
| remote: ** inst | |
| remote: ** preparing package for lazy loading | |
| remote: ** help | |
| remote: *** installing help indices | |
| remote: ** building package indices | |
| remote: ** installing vignettes | |
| remote: ** testing if installed package can be loaded | |
| remote: * DONE (tibble) | |
| remote: * installing *source* package ‘dplyr’ ... | |
| remote: ** package ‘dplyr’ successfully unpacked and MD5 sums checked | |
| remote: ** libs | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c address.cpp -o address.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c api.cpp -o api.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c arrange.cpp -o arrange.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c between.cpp -o between.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c bind.cpp -o bind.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c combine_variables.cpp -o combine_variables.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c distinct.cpp -o distinct.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c dplyr.cpp -o dplyr.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c filter.cpp -o filter.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c group_indices.cpp -o group_indices.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c init.cpp -o init.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c join.cpp -o join.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c nth.cpp -o nth.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c select.cpp -o select.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c strings_addresses.cpp -o strings_addresses.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c summarise.cpp -o summarise.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c test.cpp -o test.o | |
| remote: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -DCOMPILING_DPLYR -I"/usr/local/lib/R/site-library/Rcpp/include" -I"/usr/local/lib/R/site-library/BH/include" -DBOOST_NO_INT64_T -DBOOST_NO_INTEGRAL_INT64_T -DBOOST_NO_LONG_LONG -fpic -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g -c window.cpp -o window.o | |
| remote: g++ -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o dplyr.so RcppExports.o address.o api.o arrange.o between.o bind.o combine_variables.o distinct.o dplyr.o filter.o group_indices.o init.o join.o nth.o select.o strings_addresses.o summarise.o test.o window.o -L/usr/lib/R/lib -lR | |
| remote: installing to /usr/local/lib/R/site-library/dplyr/libs | |
| remote: ** R | |
| remote: ** data | |
| remote: *** moving datasets to lazyload DB | |
| remote: ** inst | |
| remote: ** preparing package for lazy loading | |
| remote: ** help | |
| remote: *** installing help indices | |
| remote: ** building package indices | |
| remote: ** installing vignettes | |
| remote: ** testing if installed package can be loaded | |
| remote: * DONE (dplyr) | |
| remote: | |
| remote: The downloaded source packages are in | |
| remote: ‘/tmp/Rtmp87Sc1a/downloaded_packages’ | |
| remote: R 3.3.3 successfully installed (with init) | |
| remote: -----> Discovering process types | |
| remote: Procfile declares types -> (none) | |
| remote: Default types for buildpack -> console | |
| remote: | |
| remote: -----> Compressing... | |
| remote: Done: 126.5M | |
| remote: -----> Launching... | |
| remote: Released v3 | |
| remote: https://pure-peak-40730.herokuapp.com/ deployed to Heroku | |
| remote: | |
| remote: Verifying deploy... done. |
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| library(dplyr) | |
| # add code as needed here... |
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