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FROM python:3 | |
COPY . /usr/src/app | |
WORKDIR /usr/src/app | |
RUN pip3 install -r requirements.txt | |
#download and install julia | |
RUN useradd -m -s /bin/bash julia | |
USER julia | |
ENV JULIA_PROJECT=/usr/src/app | |
RUN ./install-julia | |
ENV PATH "$PATH:/home/julia/julia/bin:" | |
ENV PYTHON /usr/local/bin/python | |
RUN julia -e 'using Pkg; Pkg.instantiate()' | |
RUN julia -e 'using Pkg; Pkg.status()' | |
RUN julia -e 'println(Base.active_project())' | |
# script specific requirements | |
CMD ["python3", "main.py"] |
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sudo service docker start | |
sudo docker build -t rdiff-test . | |
sudo docker run -it --rm --name my-running-rdiff-test rdiff-test |
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#!/bin/bash | |
URL="https://julialang-s3.julialang.org/bin/linux/x64/1.4/julia-1.4.0-linux-x86_64.tar.gz" | |
SHAFILE="julia-1.0.0.sha256" | |
WORKDIR="/tmp/install-julia" | |
FILENAME="$(basename "${URL}")" | |
THISDIR="$(dirname "${BASH_SOURCE[0]}")" | |
set -ex | |
mkdir -v "${WORKDIR}" | |
cd "${WORKDIR}" | |
wget "$URL" | |
#sha256sum --check <(grep -F "${FILENAME}" "${THISDIR}/${SHAFILE}") | |
cd ~/ | |
tar xf "${WORKDIR}/${FILENAME}" | |
ln -T -s julia-*/ julia |
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import julia | |
jl = julia.Julia(compiled_modules=False) | |
from julia import Main | |
Main.include('rdiff_test.jl') | |
if __name__ == '__main__': | |
#update port if needed | |
print("Calling julia method...") | |
Main.calcGradient() | |
print("Returned from julia method") |
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# This file is machine-generated - editing it directly is not advised | |
[[AbstractMCMC]] | |
deps = ["ConsoleProgressMonitor", "Distributed", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers"] | |
git-tree-sha1 = "31a0a7b957525748e05599488ca6eef476fef12b" | |
uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" | |
version = "1.0.1" | |
[[AbstractTrees]] | |
deps = ["Markdown"] | |
git-tree-sha1 = "33e450545eaf7699da1a6e755f9ea65f14077a45" | |
uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" | |
version = "0.3.3" | |
[[Adapt]] | |
deps = ["LinearAlgebra"] | |
git-tree-sha1 = "0fac443759fa829ed8066db6cf1077d888bb6573" | |
uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" | |
version = "2.0.2" | |
[[AdvancedHMC]] | |
deps = ["ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "Parameters", "ProgressMeter", "Random", "Requires", "Statistics", "StatsBase", "StatsFuns"] | |
git-tree-sha1 = "573080c224795309a965ff61d2b442c7e14d8c04" | |
uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" | |
version = "0.2.25" | |
[[AdvancedMH]] | |
deps = ["AbstractMCMC", "Distributions", "Random", "Requires"] | |
git-tree-sha1 = "3d25126440a0d3412c9608498db6008309163670" | |
uuid = "5b7e9947-ddc0-4b3f-9b55-0d8042f74170" | |
version = "0.5.1" | |
[[ArgCheck]] | |
git-tree-sha1 = "dedbbb2ddb876f899585c4ec4433265e3017215a" | |
uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" | |
version = "2.1.0" | |
[[Arpack]] | |
deps = ["Arpack_jll", "Libdl", "LinearAlgebra"] | |
git-tree-sha1 = "2ff92b71ba1747c5fdd541f8fc87736d82f40ec9" | |
uuid = "7d9fca2a-8960-54d3-9f78-7d1dccf2cb97" | |
version = "0.4.0" | |
[[Arpack_jll]] | |
deps = ["Libdl", "OpenBLAS_jll", "Pkg"] | |
git-tree-sha1 = "e214a9b9bd1b4e1b4f15b22c0994862b66af7ff7" | |
uuid = "68821587-b530-5797-8361-c406ea357684" | |
version = "3.5.0+3" | |
[[ArrayInterface]] | |
deps = ["LinearAlgebra", "Requires", "SparseArrays"] | |
git-tree-sha1 = "066d1e7a9eb4873660791db7f0d8c7902600b81c" | |
uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" | |
version = "2.11.0" | |
[[AxisArrays]] | |
deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] | |
git-tree-sha1 = "f31f50712cbdf40ee8287f0443b57503e34122ef" | |
uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" | |
version = "0.4.3" | |
[[Base64]] | |
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" | |
[[BenchmarkTools]] | |
deps = ["JSON", "Logging", "Printf", "Statistics", "UUIDs"] | |
git-tree-sha1 = "9e62e66db34540a0c919d72172cc2f642ac71260" | |
uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" | |
version = "0.5.0" | |
[[Bijectors]] | |
deps = ["ArgCheck", "Compat", "Distributions", "LinearAlgebra", "MappedArrays", "NNlib", "Random", "Reexport", "Requires", "Roots", "SparseArrays", "Statistics", "StatsFuns"] | |
git-tree-sha1 = "1db975dd3ac386dd91b434e50a1eddb82e1ddaa3" | |
uuid = "76274a88-744f-5084-9051-94815aaf08c4" | |
version = "0.7.2" | |
[[BinaryProvider]] | |
deps = ["Libdl", "Logging", "SHA"] | |
git-tree-sha1 = "ecdec412a9abc8db54c0efc5548c64dfce072058" | |
uuid = "b99e7846-7c00-51b0-8f62-c81ae34c0232" | |
version = "0.5.10" | |
[[Combinatorics]] | |
git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" | |
uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" | |
version = "1.0.2" | |
[[CommonSubexpressions]] | |
deps = ["MacroTools", "Test"] | |
git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" | |
uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" | |
version = "0.3.0" | |
[[Compat]] | |
deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"] | |
git-tree-sha1 = "a6a8197ae253f2c1a22b2ae17c2dfaf5812c03aa" | |
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" | |
version = "3.13.0" | |
[[CompilerSupportLibraries_jll]] | |
deps = ["Libdl", "Pkg"] | |
git-tree-sha1 = "7c4f882c41faa72118841185afc58a2eb00ef612" | |
uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" | |
version = "0.3.3+0" | |
[[Conda]] | |
deps = ["JSON", "VersionParsing"] | |
git-tree-sha1 = "7a58bb32ce5d85f8bf7559aa7c2842f9aecf52fc" | |
uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d" | |
version = "1.4.1" | |
[[ConsoleProgressMonitor]] | |
deps = ["Logging", "ProgressMeter"] | |
git-tree-sha1 = "3ab7b2136722890b9af903859afcf457fa3059e8" | |
uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" | |
version = "0.1.2" | |
[[DataAPI]] | |
git-tree-sha1 = "176e23402d80e7743fc26c19c681bfb11246af32" | |
uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" | |
version = "1.3.0" | |
[[DataStructures]] | |
deps = ["InteractiveUtils", "OrderedCollections"] | |
git-tree-sha1 = "88d48e133e6d3dd68183309877eac74393daa7eb" | |
uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" | |
version = "0.17.20" | |
[[Dates]] | |
deps = ["Printf"] | |
uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" | |
[[DelimitedFiles]] | |
deps = ["Mmap"] | |
uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" | |
[[DiffResults]] | |
deps = ["StaticArrays"] | |
git-tree-sha1 = "da24935df8e0c6cf28de340b958f6aac88eaa0cc" | |
uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" | |
version = "1.0.2" | |
[[DiffRules]] | |
deps = ["NaNMath", "Random", "SpecialFunctions"] | |
git-tree-sha1 = "eb0c34204c8410888844ada5359ac8b96292cfd1" | |
uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" | |
version = "1.0.1" | |
[[Distributed]] | |
deps = ["Random", "Serialization", "Sockets"] | |
uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" | |
[[Distributions]] | |
deps = ["FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns"] | |
git-tree-sha1 = "c4ed10355637fcb0725dc6a27060f74df24f13cd" | |
uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" | |
version = "0.23.2" | |
[[DistributionsAD]] | |
deps = ["Combinatorics", "Compat", "DiffRules", "Distributions", "FillArrays", "ForwardDiff", "LinearAlgebra", "MacroTools", "NaNMath", "PDMats", "Random", "Requires", "SpecialFunctions", "StaticArrays", "StatsBase", "StatsFuns", "Tracker", "ZygoteRules"] | |
git-tree-sha1 = "dfd9c992785bbd7e97dc99d7c110e1f9ab07e753" | |
uuid = "ced4e74d-a319-5a8a-b0ac-84af2272839c" | |
version = "0.5.3" | |
[[DocStringExtensions]] | |
deps = ["LibGit2", "Markdown", "Pkg", "Test"] | |
git-tree-sha1 = "c5714d9bcdba66389612dc4c47ed827c64112997" | |
uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" | |
version = "0.8.2" | |
[[DynamicPPL]] | |
deps = ["AbstractMCMC", "Bijectors", "Distributions", "MacroTools", "Random", "ZygoteRules"] | |
git-tree-sha1 = "b46046c78801149cc9f2b80e806fbd5a2891b652" | |
uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8" | |
version = "0.8.2" | |
[[EllipsisNotation]] | |
git-tree-sha1 = "65dad386e877850e6fce4fc77f60fe75a468ce9d" | |
uuid = "da5c29d0-fa7d-589e-88eb-ea29b0a81949" | |
version = "0.4.0" | |
[[EllipticalSliceSampling]] | |
deps = ["AbstractMCMC", "ArrayInterface", "Distributions", "Random", "Statistics"] | |
git-tree-sha1 = "38227940de7a53f62da3d288876b96cd6892c239" | |
uuid = "cad2338a-1db2-11e9-3401-43bc07c9ede2" | |
version = "0.2.2" | |
[[FillArrays]] | |
deps = ["LinearAlgebra", "Random", "SparseArrays"] | |
git-tree-sha1 = "4863cbb7910079369e258dee4add9d06ead5063a" | |
uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" | |
version = "0.8.14" | |
[[Formatting]] | |
deps = ["Printf"] | |
git-tree-sha1 = "a0c901c29c0e7c763342751c0a94211d56c0de5c" | |
uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" | |
version = "0.4.1" | |
[[ForwardDiff]] | |
deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "NaNMath", "Random", "SpecialFunctions", "StaticArrays"] | |
git-tree-sha1 = "1d090099fb82223abc48f7ce176d3f7696ede36d" | |
uuid = "f6369f11-7733-5829-9624-2563aa707210" | |
version = "0.10.12" | |
[[FunctionWrappers]] | |
git-tree-sha1 = "e4813d187be8c7b993cb7f85cbf2b7bfbaadc694" | |
uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" | |
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[[InplaceOps]] | |
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git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" | |
uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" | |
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[[InteractiveUtils]] | |
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[[IntervalSets]] | |
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[[InvertedIndices]] | |
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[[IterTools]] | |
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[[JSON]] | |
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[[LeftChildRightSiblingTrees]] | |
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[[Libdl]] | |
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[[Libtask]] | |
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[[LinearAlgebra]] | |
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[[LogDensityProblems]] | |
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[[MCMCChains]] | |
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[[OpenBLAS_jll]] | |
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[[OrderedCollections]] | |
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[[PDMats]] | |
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uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" | |
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[[Parsers]] | |
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[[Pkg]] | |
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[[Printf]] | |
deps = ["Unicode"] | |
uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" | |
[[ProgressLogging]] | |
deps = ["Logging", "SHA", "UUIDs"] | |
git-tree-sha1 = "59398022b661b6fd569f25de6b18fde39843196a" | |
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[[PyCall]] | |
deps = ["Conda", "Dates", "Libdl", "LinearAlgebra", "MacroTools", "Serialization", "VersionParsing"] | |
git-tree-sha1 = "3a3fdb9000d35958c9ba2323ca7c4958901f115d" | |
uuid = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" | |
version = "1.91.4" | |
[[QuadGK]] | |
deps = ["DataStructures", "LinearAlgebra"] | |
git-tree-sha1 = "0ab8a09d4478ebeb99a706ecbf8634a65077ccdc" | |
uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" | |
version = "2.4.0" | |
[[REPL]] | |
deps = ["InteractiveUtils", "Markdown", "Sockets"] | |
uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" | |
[[Random]] | |
deps = ["Serialization"] | |
uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" | |
[[RangeArrays]] | |
git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" | |
uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" | |
version = "0.3.2" | |
[[RecipesBase]] | |
git-tree-sha1 = "58de8f7e33b7fda6ee39eff65169cd1e19d0c107" | |
uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" | |
version = "1.0.2" | |
[[Reexport]] | |
deps = ["Pkg"] | |
git-tree-sha1 = "7b1d07f411bc8ddb7977ec7f377b97b158514fe0" | |
uuid = "189a3867-3050-52da-a836-e630ba90ab69" | |
version = "0.2.0" | |
[[Requires]] | |
deps = ["UUIDs"] | |
git-tree-sha1 = "d37400976e98018ee840e0ca4f9d20baa231dc6b" | |
uuid = "ae029012-a4dd-5104-9daa-d747884805df" | |
version = "1.0.1" | |
[[ReverseDiff]] | |
deps = ["DiffResults", "DiffRules", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "MacroTools", "NaNMath", "Random", "SpecialFunctions", "StaticArrays", "Statistics"] | |
git-tree-sha1 = "a3a2fbc8af1fc993aca48ba01484444bbeb39bf7" | |
uuid = "37e2e3b7-166d-5795-8a7a-e32c996b4267" | |
version = "1.4.2" | |
[[Rmath]] | |
deps = ["Random", "Rmath_jll"] | |
git-tree-sha1 = "86c5647b565873641538d8f812c04e4c9dbeb370" | |
uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" | |
version = "0.6.1" | |
[[Rmath_jll]] | |
deps = ["Libdl", "Pkg"] | |
git-tree-sha1 = "d76185aa1f421306dec73c057aa384bad74188f0" | |
uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" | |
version = "0.2.2+1" | |
[[Roots]] | |
deps = ["Printf"] | |
git-tree-sha1 = "1211c7c1928c1ed29cdcef65979b7a791e3b9fbe" | |
uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" | |
version = "1.0.5" | |
[[SHA]] | |
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" | |
[[Serialization]] | |
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" | |
[[SharedArrays]] | |
deps = ["Distributed", "Mmap", "Random", "Serialization"] | |
uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" | |
[[Sockets]] | |
uuid = "6462fe0b-24de-5631-8697-dd941f90decc" | |
[[SortingAlgorithms]] | |
deps = ["DataStructures", "Random", "Test"] | |
git-tree-sha1 = "03f5898c9959f8115e30bc7226ada7d0df554ddd" | |
uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" | |
version = "0.3.1" | |
[[SparseArrays]] | |
deps = ["LinearAlgebra", "Random"] | |
uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" | |
[[SpecialFunctions]] | |
deps = ["OpenSpecFun_jll"] | |
git-tree-sha1 = "d8d8b8a9f4119829410ecd706da4cc8594a1e020" | |
uuid = "276daf66-3868-5448-9aa4-cd146d93841b" | |
version = "0.10.3" | |
[[StaticArrays]] | |
deps = ["LinearAlgebra", "Random", "Statistics"] | |
git-tree-sha1 = "016d1e1a00fabc556473b07161da3d39726ded35" | |
uuid = "90137ffa-7385-5640-81b9-e52037218182" | |
version = "0.12.4" | |
[[Statistics]] | |
deps = ["LinearAlgebra", "SparseArrays"] | |
uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" | |
[[StatsBase]] | |
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics"] | |
git-tree-sha1 = "a6102b1f364befdb05746f386b67c6b7e3262c45" | |
uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" | |
version = "0.33.0" | |
[[StatsFuns]] | |
deps = ["Rmath", "SpecialFunctions"] | |
git-tree-sha1 = "04a5a8e6ab87966b43f247920eab053fd5fdc925" | |
uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" | |
version = "0.9.5" | |
[[SuiteSparse]] | |
deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] | |
uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" | |
[[TerminalLoggers]] | |
deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] | |
git-tree-sha1 = "cbea752b5eef52a3e1188fb31580c3e4fa0cbc35" | |
uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" | |
version = "0.1.2" | |
[[Test]] | |
deps = ["Distributed", "InteractiveUtils", "Logging", "Random"] | |
uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" | |
[[Tracker]] | |
deps = ["Adapt", "DiffRules", "ForwardDiff", "LinearAlgebra", "MacroTools", "NNlib", "NaNMath", "Printf", "Random", "Requires", "SpecialFunctions", "Statistics", "Test"] | |
git-tree-sha1 = "e04c24a9e8a06228ad634b3f8fe09045a80dd703" | |
uuid = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" | |
version = "0.2.9" | |
[[TransformVariables]] | |
deps = ["ArgCheck", "DocStringExtensions", "ForwardDiff", "LinearAlgebra", "MacroTools", "Parameters", "Pkg", "Random"] | |
git-tree-sha1 = "df748ba8b73996f2b46fe9103b45f75a4a5561e0" | |
uuid = "84d833dd-6860-57f9-a1a7-6da5db126cff" | |
version = "0.3.8" | |
[[Turing]] | |
deps = ["AbstractMCMC", "AdvancedHMC", "AdvancedMH", "Bijectors", "Distributions", "DistributionsAD", "DocStringExtensions", "DynamicPPL", "EllipticalSliceSampling", "ForwardDiff", "Libtask", "LinearAlgebra", "LogDensityProblems", "MCMCChains", "NamedArrays", "Printf", "ProgressLogging", "Random", "Reexport", "Requires", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tracker"] | |
git-tree-sha1 = "ceb184dd12f47f258396cff86f5e94c937a6ace1" | |
uuid = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" | |
version = "0.13.0" | |
[[UUIDs]] | |
deps = ["Random", "SHA"] | |
uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" | |
[[UnPack]] | |
git-tree-sha1 = "d4bfa022cd30df012700cf380af2141961bb3bfb" | |
uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" | |
version = "1.0.1" | |
[[Unicode]] | |
uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" | |
[[VersionParsing]] | |
git-tree-sha1 = "80229be1f670524750d905f8fc8148e5a8c4537f" | |
uuid = "81def892-9a0e-5fdd-b105-ffc91e053289" | |
version = "1.2.0" | |
[[ZygoteRules]] | |
deps = ["MacroTools"] | |
git-tree-sha1 = "b3b4882cc9accf6731a08cc39543fbc6b669dca8" | |
uuid = "700de1a5-db45-46bc-99cf-38207098b444" | |
version = "0.2.0" |
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[deps] | |
Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" | |
PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" | |
ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" | |
Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0" |
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using ReverseDiff | |
using Turing | |
Turing.setadbackend(:reversediff) | |
Turing.setrdcache(true) | |
function calcGradient() | |
println("[Julia method]") | |
end |
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flask | |
flask_restful | |
julia | |
python-dotenv |
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