Created
March 26, 2020 21:31
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Rcpp and httpuv install logs
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| > install.packages("Rcpp") | |
| Installing package into ‘/Users/winston/R/3.6’ | |
| (as ‘lib’ is unspecified) | |
| trying URL 'https://cloud.r-project.org/bin/macosx/el-capitan/contrib/3.6/Rcpp_1.0.4.tgz' | |
| Content type 'application/x-gzip' length 3124401 bytes (3.0 MB) | |
| ================================================== | |
| downloaded 3.0 MB | |
| The downloaded binary packages are in | |
| /var/folders/vd/0_g4hj6d7kq_fw5gd_r0ml5w0000gn/T//Rtmp6xesIQ/downloaded_packages | |
| Restarting R session... | |
| > install.packages("httpuv", type = "source") | |
| Installing package into ‘/Users/winston/R/3.6’ | |
| (as ‘lib’ is unspecified) | |
| trying URL 'https://cloud.r-project.org/src/contrib/httpuv_1.5.2.tar.gz' | |
| Content type 'application/x-gzip' length 1763900 bytes (1.7 MB) | |
| ================================================== | |
| downloaded 1.7 MB | |
| * installing *source* package ‘httpuv’ ... | |
| ** package ‘httpuv’ successfully unpacked and MD5 sums checked | |
| ** using staged installation | |
| ** libs | |
| clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c RcppExports-legacy.cpp -o RcppExports-legacy.o | |
| clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c RcppExports.cpp -o RcppExports.o | |
| clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c callback.cpp -o callback.o | |
| clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c callbackqueue.cpp -o callbackqueue.o | |
| clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c filedatasource-unix.cpp -o filedatasource-unix.o | |
| clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c filedatasource-win.cpp -o filedatasource-win.o | |
| clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c fs.cpp -o fs.o | |
| clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c http.cpp -o http.o | |
| clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c httprequest.cpp -o httprequest.o | |
| clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c httpresponse.cpp -o httpresponse.o | |
| clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c httpuv.cpp -o httpuv.o | |
| clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c md5.c -o md5.o | |
| clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c mime.cpp -o mime.o | |
| clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c set_invalid_parameter.c -o set_invalid_parameter.o | |
| clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c socket.cpp -o socket.o | |
| clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c staticpath.cpp -o staticpath.o | |
| clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c thread.cpp -o thread.o | |
| clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c utils.cpp -o utils.o | |
| In file included from staticpath.cpp:1: | |
| In file included from ./staticpath.h:7: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/optional.hpp:15: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/optional/optional.hpp:28: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/core/addressof.hpp:17: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/config.hpp:57: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/config/platform/macos.hpp:28: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/config/detail/posix_features.hpp:18: | |
| In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/unistd.h:655: | |
| /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/gethostuuid.h:39:17: error: unknown type name 'uuid_t' | |
| int gethostuuid(uuid_t, const struct timespec *) __OSX_AVAILABLE_STARTING(__MAC_10_5, __IPHONE_NA); | |
| ^ | |
| In file included from staticpath.cpp:1: | |
| In file included from ./staticpath.h:7: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/optional.hpp:15: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/optional/optional.hpp:28: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/core/addressof.hpp:17: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/config.hpp:57: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/config/platform/macos.hpp:28: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/config/detail/posix_features.hpp:18: | |
| /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/unistd.h:662:27: error: unknown type name 'uuid_t'; did you mean 'uid_t'? | |
| int getsgroups_np(int *, uuid_t); | |
| ^ | |
| /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/_types/_uid_t.h:31:31: note: 'uid_t' declared here | |
| typedef __darwin_uid_t uid_t; | |
| ^ | |
| In file included from staticpath.cpp:1: | |
| In file included from ./staticpath.h:7: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/optional.hpp:15: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/optional/optional.hpp:28: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/core/addressof.hpp:17: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/config.hpp:57: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/config/platform/macos.hpp:28: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/config/detail/posix_features.hpp:18: | |
| /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/unistd.h:664:27: error: unknown type name 'uuid_t'; did you mean 'uid_t'? | |
| int getwgroups_np(int *, uuid_t); | |
| ^ | |
| /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/_types/_uid_t.h:31:31: note: 'uid_t' declared here | |
| typedef __darwin_uid_t uid_t; | |
| ^ | |
| In file included from staticpath.cpp:1: | |
| In file included from ./staticpath.h:7: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/optional.hpp:15: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/optional/optional.hpp:28: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/core/addressof.hpp:17: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/config.hpp:57: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/config/platform/macos.hpp:28: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/config/detail/posix_features.hpp:18: | |
| /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/unistd.h:727:31: error: unknown type name 'uuid_t'; did you mean 'uid_t'? | |
| int setsgroups_np(int, const uuid_t); | |
| ^ | |
| /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/_types/_uid_t.h:31:31: note: 'uid_t' declared here | |
| typedef __darwin_uid_t uid_t; | |
| ^ | |
| In file included from staticpath.cpp:1: | |
| In file included from ./staticpath.h:7: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/optional.hpp:15: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/optional/optional.hpp:28: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/core/addressof.hpp:17: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/config.hpp:57: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/config/platform/macos.hpp:28: | |
| In file included from /Users/winston/R/3.6/BH/include/boost/config/detail/posix_features.hpp:18: | |
| /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/unistd.h:729:31: error: unknown type name 'uuid_t'; did you mean 'uid_t'? | |
| int setwgroups_np(int, const uuid_t); | |
| ^ | |
| /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/_types/_uid_t.h:31:31: note: 'uid_t' declared here | |
| typedef __darwin_uid_t uid_t; | |
| ^ | |
| In file included from staticpath.cpp:1: | |
| In file included from ./staticpath.h:8: | |
| In file included from ./thread.h:4: | |
| In file included from ./libuv/include/uv.h:62: | |
| In file included from libuv/include/uv/unix.h:37: | |
| /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/pwd.h:114:26: error: unknown type name 'uuid_t'; did you mean 'uid_t'? | |
| struct passwd *getpwuuid(uuid_t); | |
| ^ | |
| /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/_types/_uid_t.h:31:31: note: 'uid_t' declared here | |
| typedef __darwin_uid_t uid_t; | |
| ^ | |
| In file included from staticpath.cpp:1: | |
| In file included from ./staticpath.h:8: | |
| In file included from ./thread.h:4: | |
| In file included from ./libuv/include/uv.h:62: | |
| In file included from libuv/include/uv/unix.h:37: | |
| /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/pwd.h:115:19: error: unknown type name 'uuid_t' | |
| int getpwuuid_r(uuid_t, struct passwd *, char *, size_t, struct passwd **); | |
| ^ | |
| In file included from staticpath.cpp:1: | |
| In file included from ./staticpath.h:8: | |
| In file included from ./thread.h:4: | |
| In file included from ./libuv/include/uv.h:62: | |
| In file included from libuv/include/uv/unix.h:59: | |
| In file included from libuv/include/uv/darwin.h:26: | |
| In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/mach/mach.h:66: | |
| In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/mach/mach_types.h:111: | |
| /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/mach/dyld_kernel.h:44:2: error: unknown type name 'uuid_t'; did you mean 'uid_t'? | |
| uuid_t uuid; | |
| ^ | |
| /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/_types/_uid_t.h:31:31: note: 'uid_t' declared here | |
| typedef __darwin_uid_t uid_t; | |
| ^ | |
| clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -Ilibuv/include -pthread -I"/Users/winston/R/3.6/Rcpp/include" -I"/Users/winston/R/3.6/BH/include" -I"/Users/winston/R/3.6/later/include" -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -DSTRICT_R_HEADERS -fPIC -Wall -g -O2 -g -O0 -Wall -c uvutil.cpp -o uvutil.o | |
| 8 errors generated. | |
| make: *** [staticpath.o] Error 1 | |
| make: *** Waiting for unfinished jobs.... | |
| ERROR: compilation failed for package ‘httpuv’ | |
| * removing ‘/Users/winston/R/3.6/httpuv’ | |
| * restoring previous ‘/Users/winston/R/3.6/httpuv’ | |
| Warning in install.packages : | |
| installation of package ‘httpuv’ had non-zero exit status | |
| The downloaded source packages are in | |
| ‘/private/var/folders/vd/0_g4hj6d7kq_fw5gd_r0ml5w0000gn/T/RtmpBjN6bK/downloaded_packages’ |
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