jellyfish PKGBUILD

PKGBUILD-jellyfish.sh

# Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com>

pkgname=jellyfish
pkgver=2.2.3
pkgrel=1
pkgdesc="fast, memory-efficient counting of k-mers in DNA"
arch=('i686' 'x86_64')
url="http://www.genome.umd.edu/jellyfish.html"
license=('GPL3')
depends=('gcc-libs')
checkdepends=('time')
source=("https://github.com/gmarcais/Jellyfish/releases/download/v$pkgver/jellyfish-$pkgver.tar.gz")
md5sums=('de9a46ddfe215c939e90d38c32f8d7ce')

prepare() {
  cd $srcdir/$pkgname-$pkgver

  sed -e 's|-Dprivate=public||' \
      -i Makefile.in
}

build() {
  cd $srcdir/$pkgname-$pkgver

  ./configure --prefix=/usr

  make
}

check() {
  cd $srcdir/$pkgname-$pkgver

  make check
}

package() {
  cd $srcdir/$pkgname-$pkgver

  make DESTDIR=$pkgdir install
}