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Zhian N. Kamvar zkamvar

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@zkamvar
zkamvar / znk_dissertation_wordcloud.R
Last active January 5, 2024 16:26
Generate a wordcloud from my dissertation
library('rjson')
library('wordcloud')
library('viridis')
library('magrittr')
library('purrr')
library('svglite')
# Download JSON data ------------------------------------------------------
@zkamvar
zkamvar / give_thanks.R
Created November 21, 2023 23:43
Give thanks to contributors of a project
#' Produce a list of all GitHub contributors to a project
#'
#' If you want a way to give thanks to specific people who have contributed to a project
#' since a given release, this will extract the GitHub user names from a given package's
#' NEWS file. This assumes that 1) the package has a `NEWS.md` file and 2) the package
#' uses level 1 headers and semantic versioning for each version in the news file.
#'
#' @param package the name of a package
#' @param since a version number (must match a version recorded in the NEWS)
#' @return a character vector with GitHub user names
@zkamvar
zkamvar / fix-file-in-repo.R
Created August 28, 2023 22:33
fix a single file in a repo
library("gh")
library("base64enc")
# get a file from a repository
get_repo_file <- function(org = "carpentries", lesson = "sandpaper-docs", file = "CONTRIBUTING.md", ...) {
gh("GET /repos/{org}/{lesson}/contents/{file}",
.params = list(
org = org,
lesson = lesson,
file = file
@zkamvar
zkamvar / maintainer-check.R
Last active August 7, 2023 20:57
Get maintainers who still need to confirm that they have reset their local repositories
#' List maintainers who still need to respond to the Workbench transition issue
#'
#' @param org the name of the github organisation
#' @param repo name of the repository
#' @return a character vector of github user names for maintainers who still need to confirm
#' transition to The Workbench
#'
#' @details The Workbench transition requires maintainers to confirm that they have re-cloned
#' their local repositories to avoid a situation where they overwrite commits with the old
#' version of the repository
@zkamvar
zkamvar / Makevars
Created July 14, 2015 20:54
My R Makevars file to ensure that I build R packages with openmp
# This file's location is ~/.R/Makevars
# Default variables (no omp support):
# CXX=clang++
# CC=clang
# I followed the instructions at http://hpc.sourceforge.net/ to install gcc 4.9
CC=/usr/local/bin/gcc
CXX=/usr/local/bin/g++
FC=/usr/local/bin/gfortran
F77=/usr/local/bin/gfortran
@zkamvar
zkamvar / scrape-workshops.R
Created November 8, 2022 15:57
Scrape lessons from workshops and determine if they have workbench lessons
library("jsonlite")
library("polite")
library("rvest")
library("purrr")
library("dplyr")
workbench_slugs <- c(
"r-ecology-lesson",
"r-socialsci",
@zkamvar
zkamvar / renv.lock
Created December 15, 2021 18:29
renv.lock file from failing repo
{
"R": {
"Version": "4.1.0",
"Repositories": [
{
"Name": "carpentries",
"URL": "https://carpentries.r-universe.dev"
},
{
"Name": "carpentries_archive",
@zkamvar
zkamvar / keybase.md
Created September 20, 2021 16:58
Keybase proof

Keybase proof

I hereby claim:

  • I am zkamvar on github.
  • I am zkamvar (https://keybase.io/zkamvar) on keybase.
  • I have a public key ASDqVco4Xm3D5M11ckLrYgE9XyqlHFxA7MwqWszJxWvmSAo

To claim this, I am signing this object:

@zkamvar
zkamvar / subLoc.R
Last active April 10, 2021 19:40
Function for subsetting loci in a genind object by name
#' Subset loci in a genind object by name
#'
#' @param dat a genind object
#' @param ... names of the loci in character format OR numeric indices of the loci.
#'
#' @return the appropriate names to use for subsetting in a genind object
#' @examples
#' library(adegenet)
#' data(nancycats)
#' # Old way:
@zkamvar
zkamvar / README.md
Last active August 18, 2020 17:32
pandoc markdown_github with section-divs booboo

This compares the differences between pandoc's markdown and markdown_github engines when parsing <div> tags within sections.

Problem

In essence, if a <div> tag contains a header out of order with the main document, its contents will be appended to the div in the html document with markdown_github. If the following div appears after a level 3 header:

<div class='boo'>

## level 2