stalmok

// http://css-tricks.com/snippets/javascript/strip-whitespace-from-string/

// Remove leading and trailing whitespace
// Requires jQuery
var str = " a b    c d e f g ";
var newStr = $.trim(str);
// "a b c d e f g"

// Remove leading and trailing whitespace
// JavaScript RegEx

danijar

# Working example for my blog post at:
# https://danijar.github.io/structuring-your-tensorflow-models
import functools
import tensorflow as tf
from tensorflow.examples.tutorials.mnist import input_data


def doublewrap(function):
    """
    A decorator decorator, allowing to use the decorator to be used without

tony612

• create tasks T{NNNN} asign them
• create a branch with name like "T{NNNN}-boo-hoo"
• git checkout -b T1234-boo-foo
• commit changes on that branch until it gets ready to be reviewed
• git commit -am 'first'
• git commit -am 'now it works'
• check if it's lint free (NOTE: it runs lint against only modified files)
• arc lint
• push a review request to the server. This will create a diff with id D{NNNN}
• arc diff

robskillington

// Copyright 2016 Prometheus Team
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.

darencard

Please see the most up-to-date version of this protocol on my blog at https://darencard.net/blog/.

Genome Annotation using MAKER

MAKER is a great tool for annotating a reference genome using empirical and ab initio gene predictions. GMOD, the umbrella organization that includes MAKER, has some nice tutorials online for running MAKER. However, these were quite simplified examples and it took a bit of effort to wrap my head completely around everything. Here I will describe a de novo genome annotation for Boa constrictor in detail, so that there is a record and that it is easy to use this as a guide to annotate any genome.

Software & Data

Software prerequisites:

1. RepeatModeler and RepeatMasker with all dependencies (I used NCBI BLAST) and RepBase (ver

spicycode

# 0 is too far from ` ;)
set -g base-index 1

# Automatically set window title
set-window-option -g automatic-rename on
set-option -g set-titles on

#set -g default-terminal screen-256color
set -g status-keys vi
set -g history-limit 10000

da-n

Rename a git tag old to new:

git tag new old
git tag -d old
git push origin :refs/tags/old
git push --tags

The colon in the push command removes the tag from the remote repository. If you don't do this, git will create the old tag on your machine when you pull.

-- source http://stackoverflow.com/a/5719854/695454

dergachev

OS X Screencast to animated GIF

This gist shows how to create a GIF screencast using only free OS X tools: QuickTime, ffmpeg, and gifsicle.

Instructions

To capture the video (filesize: 19MB), using the free "QuickTime Player" application:

benjamincharity

> Thank you for reaching out to Autonomous! I am sorry to hear that you are having some trouble with your SmartDesk
> but I will be glad to assist. It sounds like your system needs a "hard reset" can I please have you follow these
> steps thoroughly.

Reset Steps:
1. Unplug the desk for 20 seconds. Plug it back in. Wait a full 20 seconds.
2. Press the up and down buttons until the desk lowers all the way and beeps or 20 seconds pass.
3. Release both buttons.
4. Press the down buttons until the desk beeps one more time or 20 seconds pass.