Adam Talbot adamrtalbot

## samplesheet-germline.csv

          
            sample
            fastq_1
            fastq_2

            
              NA12878
              s3://ngi-igenomes/test-data/sarek/NA12878_1.merged.fastq.gz
              s3://ngi-igenomes/test-data/sarek/NA12878_2.merged.fastq.gz

## samplesheet.csv

          
            sample
            fastq_1
            fastq_2

            
              HCC1395
              s3://ngi-igenomes/test-data/sarek/SRR7890919_WES_HCC1395BL-EA_normal_1.fastq.gz
              s3://ngi-igenomes/test-data/sarek/SRR7890919_WES_HCC1395BL-EA_normal_2.fastq.gz

            
              HCC1395
              s3://ngi-igenomes/test-data/sarek/SRR7890918_WES_HCC1395-EA_tumor_1.fastq.gz
              s3://ngi-igenomes/test-data/sarek/SRR7890918_WES_HCC1395-EA_tumor_2.fastq.gz

## gist:3bb91a49885aae69036617fef2bda29d
params.run = "TEST_INPUT"
	sample	fastq_1	fastq_2
	NA12878	s3://ngi-igenomes/test-data/sarek/NA12878_1.merged.fastq.gz	s3://ngi-igenomes/test-data/sarek/NA12878_2.merged.fastq.gz