jonalv

$ minishift start --show-libmachine-logs -v5
-- minishift version: v1.32.0+009893b
-- Starting profile 'minishift'
Found binary path at /usr/local/bin/docker-machine-driver-xhyve
Launching plugin server for driver xhyve
Plugin server listening at address 127.0.0.1:54116
() DBG | operation not supported by device
() Calling .GetVersion
Using API Version  1
() Calling .SetConfigRaw

jonalv

/*******************************************************************************
 * Bioclipse-script to generate different coordinates on a list of molecules.
 * Author: Ola Spjuth
 ******************************************************************************/

//Create list of molecules
mols=cdk.createMoleculeList();
mols.add(cdk.fromSMILES("CCC"));
mols.add(cdk.fromSMILES("CCCNCC"));
mols.add(cdk.fromSMILES("CCNCCOC(C)CC"));

jonalv

Enkel linsdal med farsk ingefära, grön chilifrukt och koriander

Eftersom kryddoljan innehåller färska ingredienser utöver de torkade kryddorna, ger den linserna en djupare och mer komplex smak än i basreceptet "Enkel linsdal med kummin och torkad röd chilifrukt".

Vi har använt oss av röda linser, men receptet anger att även ärtor fungerar bra.

Ingredienser

jonalv

  1 public class Test {
  2 
  3     public static void main(String[] _) {
  4         Integer i = new Integer(0);
  5         Integer j = new Integer(0);
  6         System.out.println(i==j);
  7         i = 0;
  8         j = 0;
  9         System.out.println(i==j);
 10         i = Integer.valueOf(0);

jonalv

var FILTERING = "Filtering";
var FILTERED = "Filtered";
if ( structuredb.allDatabaseNames().contains(FILTERING) ) {
	structuredb.deleteDatabase(FILTERING);
}
structuredb.createDatabase(FILTERING);
structuredb.addMoleculesFromSDF(FILTERING, "/Sample Data/SDF/Fragments2.sdf");

var iterator = structuredb.allStructuresIterator( FILTERING );
var filteredAnnotation = structuredb.createTextAnnotation( FILTERING, "label", FILTERED );

jonalv

!SESSION 2009-09-03 10:08:50.992 -----------------------------------------------
eclipse.buildId=unknown
java.version=1.5.0_16
java.vendor=Apple Inc.
BootLoader constants: OS=macosx, ARCH=x86, WS=cocoa, NL=en_US
Framework arguments:  -product net.bioclipse.ui.product
Command-line arguments:  -product net.bioclipse.ui.product -data /Users/jonathan/Documents/Bioclipse2Eclipse3.5/../runtime-bioclipse.product -dev file:/Users/jonathan/Documents/Bioclipse2Eclipse3.5/.metadata/.plugins/org.eclipse.pde.core/bioclipse.product/dev.properties -os macosx -ws cocoa -arch x86 -consolelog -data @nodefault

!ENTRY org.eclipse.equinox.app 0 0 2009-09-03 10:08:52.718
!MESSAGE Product net.bioclipse.ui.product could not be found.

jonalv

ant
Buildfile: build.xml

runPerl:
     [exec] sh: /usr/bin/xpath: /usr/bin/perl: bad interpreter: No such file or directory
     [exec] sh: /usr/bin/xpath: /usr/bin/perl: bad interpreter: No such file or directory
     [exec] sh: /usr/bin/xpath: /usr/bin/perl: bad interpreter: No such file or directory
     [exec] sh: /usr/bin/xpath: /usr/bin/perl: bad interpreter: No such file or directory
     [exec] sh: /usr/bin/xpath: /usr/bin/perl: bad interpreter: No such file or directory
     [exec] sh: /usr/bin/xpath: /usr/bin/perl: bad interpreter: No such file or directory

jonalv

Requested operation cannot be performed because it would invalidate the current configuration. See details for more information.
  Eclipse BIRT Report Runtime Feature (2.3.2.r232_v20081010-7k8E7fELFluav5n_2NEXh3W6B9_) requires feature "com.lowagie.itext (1.5.2)", or later version.
  Eclipse BIRT ODA JDBC Connection Profile Feature (2.3.2.r232_v20081010-67859cADAamA55V5A89) requires plug-in "org.eclipse.datatools.connectivity.sqm.core (1.0.1)", or later version.
  Eclipse XML Editors and Tools (3.0.4.v200811211541-7F2ENnCwum8W79A1UYNgSjOcFVJg) requires feature "org.eclipse.platform (3.4.0)", or compatible.
  WST Common UI (3.0.4.v200811200248-7C78ELhE8VrRVqtHp4iT8PuSwZ5W) requires feature "org.eclipse.platform (3.4.0)", or compatible.
  WST Common Core (3.0.4.v200811200248-7C7_EVNE_EkMNtRvY4V6o0) requires feature "org.eclipse.platform (3.4.0)", or compatible.
  WST XML Core (3.0.4.v200812040936-7A7NEH2E7QYGHOIsNrGpVX) requires feature "org.eclipse.platform (3.4.0)", or compatible.
  WST Common UI (3.0.5.v20090

jonalv

package net.bioclipse.managers.tests;

import org.eclipse.core.resources.IFile;
import org.eclipse.core.runtime.IProgressMonitor;

import net.bioclipse.core.domain.BioObject;
import net.bioclipse.core.domain.IBioObject;
import net.bioclipse.jobs.BioclipseJob;
import net.bioclipse.jobs.IPartialReturner;
import net.bioclipse.managers.business.IBioclipseManager;

jonalv

package net.bioclipse.managers.tests;

import java.util.List;

import org.eclipse.core.resources.IFile;

import net.bioclipse.core.domain.IBioObject;
import net.bioclipse.jobs.BioclipseJob;
import net.bioclipse.jobs.BioclipseJobUpdateHook;
import net.bioclipse.managers.business.IBioclipseManager;