gistfile1.txt

rob@blade2:~/pipelines/itag$ sudo -u itagpipeline ./run.sh ITAG/bin/itag_batch.pl -L -d ~/itagpipeline run 7 sgn_unigenes
Password:
running sgn_unigenes in batch 7
CXGN::Tools::Run: WARNING: cluster queue contains more than 2000 (max_cluster_jobs) jobs, throttling job submissions
 at /data/shared/home/rob/pipelines/itag/ITAG/lib/CXGN/ITAG/Pipeline/Analysis.pm line 838
CXGN::Tools::Run error running `qsub`: qsub: Invalid credential
CXGN::Tools::Run retrying cluster job submission.
CXGN::Tools::Run: cluster job id: 406351.eggplant.cluster.sgn
CXGN::Tools::Run: start time: 2010-05-19 00:05:27 EDT
CXGN::Tools::Run: error time: 2010-05-19 00:08:06 EDT
CXGN::Tools::Run: command failed: 'itag_wrapper perl -MCXGN::ITAG::Pipeline::Analysis::sgn_unigenes -e CXGN::ITAG::Pipeline::An
alysis::sgn_unigenes->run_gth('scaffold1804','/data/shared/tomato_genome/itagpipeline/itag/pipe001/batch007/seq/scaffold1804.se
q.vecscreened.itag001.batch007.v1.fasta','/data/prod/tmp/itag-analysis-sgn_unigenes-BLrdPk/scaffold1804/xml','/data/prod/tmp/it
ag-analysis-sgn_unigenes-BLrdPk/scaffold1804/gff3')'
CXGN::Tools::Run: Command failed on host 'blade2', user 'itagpipeline', with $?=9, exit value 0, signal KILL (9), $r=31714, $!=
'' (string could be spurious)
CXGN::Tools::Run: last few lines of stdout:
CXGN::Tools::Run: last few lines of stderr: