gistfile1.txt

rob@eggplant:~/pipelines/itag$ sudo -u itagpipeline ./run.sh ITAG/bin/itag_batch.pl -L -d ~/itagpipeline run 7 sgn_unige\
n
es
running sgn_unigenes in batch 7
CXGN::Tools::Run: WARNING: cluster queue contains more than 2000 (max_cluster_jobs) jobs, throttling job submissions
 at /data/shared/home/rob/pipelines/itag/ITAG/lib/CXGN/ITAG/Pipeline/Analysis.pm line 838
qstat: Unknown Job Id 417939.eggplant.cluster.sgn
CXGN::Tools::Run: cluster job id: 417939.eggplant.cluster.sgn
CXGN::Tools::Run: start time: 2010-05-27 06:22:39 EDT
CXGN::Tools::Run: error time: 2010-05-27 06:25:53 EDT
CXGN::Tools::Run: command failed: 'itag_wrapper perl -MCXGN::ITAG::Pipeline::Analysis::sgn_unigenes -e CXGN::ITAG::Pipel\
i
ne::Analysis::sgn_unigenes->run_gth('scaffold1466','/data/shared/tomato_genome/itagpipeline/itag/pipe001/batch007/seq/scaffold1466.seq.vecscreened.itag001.batch007.v1.fasta','/data/prod/tmp/itag-analysis-sgn_unigenes-_W5Y83/scaffold1466/xml'\
,
'/data/prod/tmp/itag-analysis-sgn_unigenes-_W5Y83/scaffold1466/gff3')'
CXGN::Tools::Run: Command failed on host 'shiv1.cluster.sgn', user 'itagpipeline', with $?=9, exit value 0, signal KILL \
(
9), $r=16906, $!='' (string could be spurious)
CXGN::Tools::Run: last few lines of stdout:
CXGN::Tools::Run: last few lines of stderr:
==== CXGN::Tools::Run running qstat -f on this job ===========
==== CXGN::Tools::Run end qstat output =======================
 at /data/shared/home/rob/pipelines/itag/ITAG-analyses/lib/CXGN/ITAG/Pipeline/Analysis/gth_base.pm line 73

//