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@NickSto
Created December 15, 2016 19:05
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BCALM 2, git commit d47cf58
setting storage type to hdf5
bcalm_algo params, prefix:k21a10/SC8C1.bcalm.unitigs.fa k:21 a:10 minsize:10 threads:48 mintype:1
DSK used 1 passes and 48 partitions
Iterated 339851 kmers, among them 69358 were doubled
In this superbucket (containing 48 active minimizers),
sum of time spent in lambda's: 31223.5 msecs
longest lambda: 706.7 msecs
tot time of best scheduling of lambdas: 31223.5 msecs
best theoretical speedup: 44.2x
Done with partition 0 -- memory [current, maximum (maxRSS)]: [1239, 2932] MB
Iterated 58596 kmers, among them 19203 were doubled
Loaded 13025 doubled kmers for partition 1
In this superbucket (containing 48 active minimizers),
sum of time spent in lambda's: 858.6 msecs
longest lambda: 52.9 msecs
tot time of best scheduling of lambdas: 858.6 msecs
best theoretical speedup: 16.2x
Done with partition 1 -- memory [current, maximum (maxRSS)]: [1825, 2932] MB
wtf? traveller kmer = CACCGCTGCTTCGCAAGCGGC, min_minimizer=216571 max_minimizer=1048575, repart(min_minimizer)=2, repart(max_minimizer)=1
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