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$ wget https://github.com/samtools/samtools/releases/download/1.3.1/samtools-1.3.1.tar.bz2 -O samtools.tar.bz2
$ tar -xjvf samtools.tar.bz2
$ cd samtools-{version}
$ make
$ sudo make prefix=/usr/local/bin install
# if you have old version such as 0.x from samtools, you may remove it and create a link to new version
$ sudo apt remove samtools
$ sudo ln -s /usr/local/bin/bin/samtools /usr/bin/samtools
# Or, you can just use the path to call samtools
$ /usr/loca/bin/bin/samtools -h
$ wget https://github.com/samtools/htslib/releases/download/1.3.2/htslib-1.3.2.tar.bz2 -O htslib.tar.bz2
$ tar -xjvf htslib.tar.bz2
$ cd htslib-{version}
$ make
$ sudo make install
@phancanhtrinh have you installed the dependencies?
Algo, I didn't understand why you needed to make the directories in the first row.
Could you post here all the commands you used?
You can algo install all these packages using conda
@phancanhtrinh have you installed the dependencies?
Algo, I didn't understand why you needed to make the directories in the first row.
Could you post here all the commands you used?
You can algo install all these packages using conda