Last active
September 20, 2019 20:07
-
-
Save nathandunn/c736b1d21c906c2d054f37bfbafa053c to your computer and use it in GitHub Desktop.
tsv to json converter
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
function tsvJSON(tsv){ | |
var lines=tsv.split("\n"); | |
var result = []; | |
for(var i=0;i<lines.length;i++){ | |
var obj = {}; | |
var currentline=lines[i].split("\t"); | |
if(currentline.length>2){ | |
obj.gene = currentline[1].split(","); | |
if(currentline[0].indexOf('(GO:')>0){ | |
const startIndex = currentline[0].indexOf('(GO:'); | |
const endIndex = currentline[0].indexOf(')'); | |
console.log(startIndex,endIndex,currentline[0].substr(startIndex+1,endIndex-startIndex-1)); | |
obj.goid = currentline[0].substr(startIndex+1,endIndex-startIndex-1); | |
obj.golabel = currentline[0].substr(0,startIndex-1); | |
} | |
else{ | |
obj.golabel = currentline[0]; | |
} | |
result.push(obj); | |
} | |
} | |
return JSON.stringify(result); //JSON | |
} | |
const fs = require('fs') | |
let dataString = ''; | |
fs.readFile('input.tsv', (err, data) => { | |
if (err) throw err; | |
dataString = data.toString(); | |
const output = tsvJSON(data.toString()); | |
fs.writeFileSync('./output.json', output, 'utf-8'); | |
}) |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment