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July 24, 2019 02:33
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How to install sf 0.7-6 on macOS Mojave with MacPorts
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| How to install sf 0.7-6 on macOS Mojave with MacPorts | |
| Prerequisites: | |
| - installing R, pkg-config, and gdal via MacPorts. | |
| Note that proj (proj5) is automatically installed as a dependency for gdal. | |
| - downloading the source tarball sf_0.7-6.tar.gz in the current directory | |
| Then: | |
| $ PKG_CONFIG_PATH=/opt/local/lib/proj5/lib/pkgconfig R CMD INSTALL sf_0.7-6.tar.gz --configure-args='-with-gdal-config=/opt/local/bin/gdal-config -with-geos-config=/opt/local/bin/geos-config --with-proj-api=yes' | |
| * installing to library ‘/Users/abe/Library/R/3.5/library’ | |
| * installing *source* package ‘sf’ ... | |
| ** package ‘sf’ successfully unpacked and MD5 sums checked | |
| configure: CC: /usr/bin/clang | |
| configure: CXX: /usr/bin/clang++ -std=gnu++11 | |
| configure: gdal-config set to /opt/local/bin/gdal-config | |
| checking gdal-config exists... yes | |
| checking gdal-config executable... yes | |
| checking gdal-config usability... yes | |
| configure: GDAL: 2.3.2 | |
| checking GDAL version >= 2.0.1... yes | |
| checking for gcc... /usr/bin/clang | |
| checking whether the C compiler works... yes | |
| checking for C compiler default output file name... a.out | |
| checking for suffix of executables... | |
| checking whether we are cross compiling... no | |
| checking for suffix of object files... o | |
| checking whether we are using the GNU C compiler... yes | |
| checking whether /usr/bin/clang accepts -g... yes | |
| checking for /usr/bin/clang option to accept ISO C89... none needed | |
| checking how to run the C preprocessor... /usr/bin/clang -E | |
| checking for grep that handles long lines and -e... /usr/bin/grep | |
| checking for egrep... /usr/bin/grep -E | |
| checking for ANSI C header files... yes | |
| checking for sys/types.h... yes | |
| checking for sys/stat.h... yes | |
| checking for stdlib.h... yes | |
| checking for string.h... yes | |
| checking for memory.h... yes | |
| checking for strings.h... yes | |
| checking for inttypes.h... yes | |
| checking for stdint.h... yes | |
| checking for unistd.h... yes | |
| checking gdal.h usability... yes | |
| checking gdal.h presence... yes | |
| checking for gdal.h... yes | |
| checking GDAL: linking with --libs only... yes | |
| checking GDAL: /opt/local/share/gdal/pcs.csv readable... yes | |
| checking GDAL: checking whether PROJ is available for linking:... yes | |
| checking GDAL: checking whether PROJ is available fur running:... yes | |
| configure: pkg-config proj exists, will use it | |
| checking proj_api.h usability... yes | |
| checking proj_api.h presence... yes | |
| checking for proj_api.h... yes | |
| configure: PROJ: 5.2.0 | |
| checking for pj_init_plus in -lproj... yes | |
| checking PROJ: epsg found and readable... yes | |
| configure: geos-config set to /opt/local/bin/geos-config | |
| checking geos-config exists... yes | |
| checking geos-config executable... yes | |
| checking geos-config usability... yes | |
| configure: GEOS: 3.7.2 | |
| checking GEOS version >= 3.4.0... yes | |
| checking geos_c.h usability... yes | |
| checking geos_c.h presence... yes | |
| checking for geos_c.h... yes | |
| checking geos: linking with -L/opt/local/lib -lgeos_c... yes | |
| configure: Package CPP flags: -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include | |
| configure: Package LIBS: -L/opt/local/lib/proj5/lib -lproj -L/opt/local/lib -lgdal -L/opt/local/lib -lgeos_c | |
| configure: creating ./config.status | |
| config.status: creating src/Makevars | |
| ** libs | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c RcppExports.cpp -o RcppExports.o | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c bbox.cpp -o bbox.o | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c gdal.cpp -o gdal.o | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c gdal_geom.cpp -o gdal_geom.o | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c gdal_read.cpp -o gdal_read.o | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c gdal_utils.cpp -o gdal_utils.o | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c gdal_write.cpp -o gdal_write.o | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c geos.cpp -o geos.o | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c hex.cpp -o hex.o | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c ops.cpp -o ops.o | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c polygonize.cpp -o polygonize.o | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c proj.cpp -o proj.o | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c proj_info.cpp -o proj_info.o | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c raster2sf.cpp -o raster2sf.o | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c sfg.cpp -o sfg.o | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c signed_area.cpp -o signed_area.o | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c stars.cpp -o stars.o | |
| /usr/bin/clang++ -std=gnu++11 -I"/opt/local/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/local/lib/proj5/include -I/opt/local/include -I/opt/local/include -I"/Users/abe/Library/R/3.5/library/Rcpp/include" -I/opt/local/include -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -fPIC -pipe -Os -stdlib=libc++ -isysroot/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -c wkb.cpp -o wkb.o | |
| /usr/bin/clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/opt/local/Library/Frameworks/R.framework/Resources/lib -L/opt/local/lib -Wl,-headerpad_max_install_names -Wl,-syslibroot,/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -arch x86_64 -o sf.so RcppExports.o bbox.o gdal.o gdal_geom.o gdal_read.o gdal_utils.o gdal_write.o geos.o hex.o ops.o polygonize.o proj.o proj_info.o raster2sf.o sfg.o signed_area.o stars.o wkb.o -L/opt/local/lib/proj5/lib -lproj -L/opt/local/lib -lgdal -L/opt/local/lib -lgeos_c -F/opt/local/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation | |
| installing to /Users/abe/Library/R/3.5/library/sf/libs | |
| ** R | |
| ** demo | |
| ** inst | |
| ** byte-compile and prepare package for lazy loading | |
| in method for ‘dbWriteTable’ with signature ‘"PostgreSQLConnection","character","sf"’: no definition for class “PostgreSQLConnection” | |
| in method for ‘dbDataType’ with signature ‘"PostgreSQLConnection","sf"’: no definition for class “PostgreSQLConnection” | |
| in method for ‘coerce’ with signature ‘"Spatial","sf"’: no definition for class “Spatial” | |
| in method for ‘coerce’ with signature ‘"Spatial","sfc"’: no definition for class “Spatial” | |
| in method for ‘coerce’ with signature ‘"sf","Spatial"’: no definition for class “Spatial” | |
| in method for ‘coerce’ with signature ‘"sfc","Spatial"’: no definition for class “Spatial” | |
| in method for ‘coerce’ with signature ‘"XY","Spatial"’: no definition for class “Spatial” | |
| ** help | |
| *** installing help indices | |
| *** copying figures | |
| ** building package indices | |
| ** installing vignettes | |
| ** testing if installed package can be loaded | |
| * DONE (sf) | |
| $ R --no-save | |
| R version 3.5.1 (2018-07-02) -- "Feather Spray" | |
| Copyright (C) 2018 The R Foundation for Statistical Computing | |
| Platform: x86_64-apple-darwin18.6.0 (64-bit) | |
| R is free software and comes with ABSOLUTELY NO WARRANTY. | |
| You are welcome to redistribute it under certain conditions. | |
| Type 'license()' or 'licence()' for distribution details. | |
| Natural language support but running in an English locale | |
| R is a collaborative project with many contributors. | |
| Type 'contributors()' for more information and | |
| 'citation()' on how to cite R or R packages in publications. | |
| Type 'demo()' for some demos, 'help()' for on-line help, or | |
| 'help.start()' for an HTML browser interface to help. | |
| Type 'q()' to quit R. | |
| > require(sf) | |
| Loading required package: sf | |
| Linking to GEOS 3.7.2, GDAL 2.3.2, PROJ 5.2.0 | |
| > | |
| $ |
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