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adefelicibus / hibp.py
Created May 3, 2018 17:28 — forked from rvalieris/hibp.py
#!/usr/bin/env python3
import requests
import hashlib
import getpass
password = getpass.getpass()
hash = hashlib.sha1(password.encode("utf8")).hexdigest().upper()
head, rest = hash[:5], hash[5:]
r = requests.get("https://api.pwnedpasswords.com/range/%s" % head)
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adefelicibus / Download Google Drive files with WGET
Created February 22, 2018 19:19 — forked from iamtekeste/Download Google Drive files with WGET
Download Google Drive files with WGET
Download Google Drive files with WGET
Example Google Drive download link:
https://docs.google.com/open?id=[ID]
To download the file with WGET you need to use this link:
https://googledrive.com/host/[ID]
Example WGET command:
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adefelicibus / ensembl_vep_86_with_offline_cache.md
Created October 30, 2017 10:16 — forked from ckandoth/ensembl_vep_86_with_offline_cache.md
Install Ensembl's VEP v86 with various caches for running offline

Ensembl's VEP (Variant Effect Predictor) is popular for how it picks a single effect per gene as detailed here, its CLIA-compliant HGVS variant format, and Sequence Ontology nomenclature for variant effects.

To follow these instructions, we'll assume you have these packaged essentials installed:

## For Debian/Ubuntu system admins ##
sudo apt-get install -y build-essential git libncurses-dev

## For RHEL/CentOS system admins ##
sudo yum groupinstall -y 'Development Tools'
sudo yum install -y git ncurses-devel
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adefelicibus / gunicorn_start.bash
Created July 1, 2016 12:11 — forked from postrational/gunicorn_start.bash
Example of how to set up Django on Nginx with Gunicorn and supervisordhttp://michal.karzynski.pl/blog/2013/06/09/django-nginx-gunicorn-virtualenv-supervisor/
#!/bin/bash
NAME="hello_app" # Name of the application
DJANGODIR=/webapps/hello_django/hello # Django project directory
SOCKFILE=/webapps/hello_django/run/gunicorn.sock # we will communicte using this unix socket
USER=hello # the user to run as
GROUP=webapps # the group to run as
NUM_WORKERS=3 # how many worker processes should Gunicorn spawn
DJANGO_SETTINGS_MODULE=hello.settings # which settings file should Django use
DJANGO_WSGI_MODULE=hello.wsgi # WSGI module name
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adefelicibus / galaxy-init-example
Created November 17, 2015 15:50 — forked from chapmanb/galaxy-init-example
Example Galaxy start script for CentOS: edit and put in /etc/init.d/galaxy
#!/bin/bash
#--- config
SERVICE_NAME=galaxy
RUN_AS=galaxy
RUN_IN=/your/galaxy/directory
#--- main actions
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adefelicibus / qiime_centos.md
Last active September 3, 2015 13:35 — forked from alanorth/qiime_centos.md
Manually installing QIIME 1.8.0 on CentOS 6.5...

QIIME 1.8.0 on CentOS 6.5

Installing QIIME manually in it's own prefix on CentOS 6.5. Our cluster has a network-mounted applications directory, so I wanted to install it once there, so all cluster nodes could use it.

Python 2.7.3

QIIME wants this specific version, so let's compile and install it into the qiime/1.8.0 prefix.

Prepare Python source: