Alexandre Defelicibus adefelicibus

## README.md

      
              2 files
            
          
              1 fork
            
          
              1 comment
            
          
              10 stars
            
          
                lindenb
                / README.md
            
            
              Last active
              June 23, 2023 19:41
            
              
                How to linearize a FASTA sequence using awk.
              
          
    Linearize a fasta sequence

awk -f linearizefasta.awk < input.fa
or
awk '/^&gt;/ {printf("%s%s\t",(N&gt;0?"\n":""),$0);N++;next;} {printf("%s",$0);} END {printf("\n");}' &lt; input.fa

  
## GTF.py
#!/usr/bin/env python
"""
GTF.py
Kamil Slowikowski
December 24, 2013

Read GFF/GTF files. Works with gzip compressed files and pandas.

    http://useast.ensembl.org/info/website/upload/gff.html
	#!/usr/bin/env python
	"""
	GTF.py
	Kamil Slowikowski
	December 24, 2013

	Read GFF/GTF files. Works with gzip compressed files and pandas.

	http://useast.ensembl.org/info/website/upload/gff.html