Created
June 26, 2025 14:15
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error log file from CI run PR_3498 - gdas_marineanlfinal.log
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| + . /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/ush/load_ufsda_modules.sh | |
| ++ [[ hxB == *x* ]] | |
| ++ set_x=YES | |
| ++ [[ NO == \N\O ]] | |
| ++ echo 'Loading modules quietly...' | |
| Loading modules quietly... | |
| ++ set +x | |
| ------------------------------------------------------------------------------- | |
| The following dependent module(s) are not currently loaded: py-numpy/1.22.3 (required by: bufr/12.0.1), python/3.10.13 (required by: boost/1.83.0, bufr/12.0.1, fckit/0.11.0, atlas/0.35.1, py-pybind11/2.11.0) | |
| ------------------------------------------------------------------------------- | |
| Currently Loaded Modules: | |
| 1) intel-oneapi-compilers/2023.1.0 35) fftw/3.3.10 | |
| 2) stack-intel/2021.9.0 36) fckit/0.11.0 | |
| 3) intel-oneapi-mpi/2021.9.0 37) fiat/1.2.0 | |
| 4) stack-intel-oneapi-mpi/2021.9.0 38) ectrans/1.2.0 | |
| 5) cmake/3.23.1 39) fms/2023.04 | |
| 6) nghttp2/1.57.0 40) esmf/8.6.0 | |
| 7) curl/8.4.0 41) qhull/2020.2 | |
| 8) zlib/1.2.13 42) atlas/0.35.1 | |
| 9) git/2.31.1 43) sp/2.5.0 | |
| 10) hdf5/1.14.0 44) gsl-lite/0.37.0 | |
| 11) parallel-netcdf/1.12.2 45) libjpeg/2.1.0 | |
| 12) snappy/1.1.10 46) krb5/1.20.1 | |
| 13) zstd/1.5.2 47) libtirpc/1.3.3 | |
| 14) c-blosc/1.21.5 48) hdf/4.2.15 | |
| 15) netcdf-c/4.9.2 49) jedi-cmake/1.4.0 | |
| 16) nccmp/1.9.0.1 50) libpng/1.6.37 | |
| 17) netcdf-fortran/4.6.1 51) libxt/1.1.5 | |
| 18) antlr/2.7.7 52) libxmu/1.1.4 | |
| 19) gsl/2.7.1 53) libxpm/3.5.12 | |
| 20) nco/5.0.6 54) libxaw/1.0.13 | |
| 21) parallelio/2.5.10 55) udunits/2.2.28 | |
| 22) wget/1.21.1 56) ncview/2.1.9 | |
| 23) pigz/2.7 57) netcdf-cxx4/4.3.1 | |
| 24) tar/1.34 58) py-pybind11/2.11.0 | |
| 25) gettext/0.21.1 59) contrib/0.1 | |
| 26) boost/1.83.0 60) noaatools/3.1 | |
| 27) bufr/12.0.1 61) rocoto/1.3.7 | |
| 28) git-lfs/3.1.2 62) bacio/2.4.1 | |
| 29) ecbuild/3.7.2 63) w3emc/2.10.0 | |
| 30) openjpeg/2.3.1 64) prod_util/2.1.1 | |
| 31) eccodes/2.32.0 65) hpc/1.2.0 | |
| 32) eigen/3.4.0 66) miniconda3/4.6.14 | |
| 33) openblas/0.3.24 67) gdasapp/1.0.0 | |
| 34) eckit/1.24.5 68) GDAS/orion.intel | |
| ++ pip list | |
| Package Version | |
| ------------------ --------- | |
| attrs 21.4.0 | |
| autopep8 1.6.0 | |
| boto3 1.21.23 | |
| botocore 1.24.23 | |
| Bottleneck 1.3.2 | |
| certifi 2022.6.15 | |
| cftime 1.5.1.1 | |
| click 8.1.7 | |
| Cython 0.29.28 | |
| f90nml 1.4.3 | |
| h5py 2.10.0 | |
| importlib-metadata 4.8.2 | |
| iniconfig 1.1.1 | |
| Jinja2 3.1.2 | |
| jmespath 1.0.0 | |
| Markdown 3.4.1 | |
| MarkupSafe 2.1.2 | |
| mkl-fft 1.3.1 | |
| mkl-random 1.2.2 | |
| mkl-service 2.4.0 | |
| mpi4py 3.1.5 | |
| netCDF4 1.4.2 | |
| numexpr 2.8.1 | |
| numpy 1.21.6 | |
| packaging 21.3 | |
| pandas 1.3.5 | |
| pip 21.2.2 | |
| pluggy 1.0.0 | |
| py 1.11.0 | |
| py-ncepbufr 12.0.1 | |
| pybind11 2.11.0 | |
| pycodestyle 2.8.0 | |
| pygrib 2.1.4 | |
| pygw 0.0.1 | |
| pyparsing 3.0.4 | |
| pyproj 1.9.6 | |
| pytest 6.2.5 | |
| python-dateutil 2.8.2 | |
| pytz 2021.3 | |
| PyYAML 6.0 | |
| r2d2 1.0.0 | |
| s3transfer 0.5.2 | |
| scipy 1.7.3 | |
| setuptools 58.0.4 | |
| six 1.16.0 | |
| solo 1.0.0 | |
| toml 0.10.2 | |
| typing-extensions 3.10.0.2 | |
| urllib3 1.26.9 | |
| wheel 0.37.1 | |
| wxflow 0.1.0 | |
| xarray 0.20.1 | |
| zipp 3.7.0 | |
| ++ wxflowPATH=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/ush/python | |
| ++ PYTHONPATH=/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/py-pybind11-2.11.0-ungjl2t/lib/python3.10/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/bufr-12.0.1-aakabgj/lib64/python3.10/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/bufr-12.0.1-aakabgj/lib/python3.10/site-packages:/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/ush:/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/ush/python | |
| ++ export PYTHONPATH | |
| ++ _regex='[0-9]+\.[0-9]+' | |
| +++ python --version | |
| ++ [[ Python 3.7.12 =~ [0-9]+\.[0-9]+ ]] | |
| ++ export PYTHON_VERSION=3.7 | |
| ++ PYTHON_VERSION=3.7 | |
| ++ pyiodaPATH=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/sorc/gdas.cd/build/lib/python3.7/ | |
| ++ PYTHONPATH=/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/py-pybind11-2.11.0-ungjl2t/lib/python3.10/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/bufr-12.0.1-aakabgj/lib64/python3.10/site-packages:/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/bufr-12.0.1-aakabgj/lib/python3.10/site-packages:/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/ush:/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/ush/python::/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/sorc/gdas.cd/build/lib/python3.7/ | |
| ++ export PYTHONPATH | |
| ++ ulimit -S -s 16384 | |
| ++ unset ulimit_s | |
| + status=0 | |
| + [[ 0 -ne 0 ]] | |
| + export job=marineanlfinal | |
| + job=marineanlfinal | |
| + export jobid=marineanlfinal.52456 | |
| + jobid=marineanlfinal.52456 | |
| + /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/jobs/JGLOBAL_MARINE_ANALYSIS_FINALIZE | |
| Begin /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/jobs/JGLOBAL_MARINE_ANALYSIS_FINALIZE at Thu Jun 26 14:08:27 UTC 2025 | |
| ++ jjob_header.sh[46]OPTIND=1 | |
| ++ jjob_header.sh[47]getopts c:e: option | |
| ++ jjob_header.sh[48]case "${option}" in | |
| ++ jjob_header.sh[50]env_job=marineanlfinal | |
| ++ jjob_header.sh[47]getopts c:e: option | |
| ++ jjob_header.sh[48]case "${option}" in | |
| ++ jjob_header.sh[49]read -ra configs | |
| ++ jjob_header.sh[47]getopts c:e: option | |
| ++ jjob_header.sh[61]shift 4 | |
| ++ jjob_header.sh[63][[ -z marineanlfinal ]] | |
| ++ jjob_header.sh[71]export DATA=/work2/noaa/global/role-global/stmp/ORION/RUNDIRS/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.2021122018/gdasmarineanalysis.2021122018/marinevariational | |
| ++ jjob_header.sh[71]DATA=/work2/noaa/global/role-global/stmp/ORION/RUNDIRS/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.2021122018/gdasmarineanalysis.2021122018/marinevariational | |
| ++ jjob_header.sh[72][[ NO == \Y\E\S ]] | |
| ++ jjob_header.sh[75]mkdir -p /work2/noaa/global/role-global/stmp/ORION/RUNDIRS/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.2021122018/gdasmarineanalysis.2021122018/marinevariational | |
| ++ jjob_header.sh[76]cd /work2/noaa/global/role-global/stmp/ORION/RUNDIRS/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.2021122018/gdasmarineanalysis.2021122018/marinevariational | |
| ++ jjob_header.sh[85]export pid=53165 | |
| ++ jjob_header.sh[85]pid=53165 | |
| ++ jjob_header.sh[86]export pgmout=OUTPUT.53165 | |
| ++ jjob_header.sh[86]pgmout=OUTPUT.53165 | |
| ++ jjob_header.sh[87]export pgmerr=errfile | |
| ++ jjob_header.sh[87]pgmerr=errfile | |
| ++ jjob_header.sh[90]export pgm= | |
| ++ jjob_header.sh[90]pgm= | |
| ++ jjob_header.sh[96]export cycle=t18z | |
| ++ jjob_header.sh[96]cycle=t18z | |
| ++ jjob_header.sh[97]setpdy.sh | |
| + setpdy.sh[20]'[' /work2/noaa/global/role-global/stmp/ORION/RUNDIRS/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.2021122018/gdasmarineanalysis.2021122018/marinevariational == /home/role-global ']' | |
| + setpdy.sh[25][[ ! t18z =~ t??z ]] | |
| + setpdy.sh[30]case $# in | |
| + setpdy.sh[31]dates_before_PDY=7 | |
| + setpdy.sh[32]dates_after_PDY=7 | |
| + setpdy.sh[50]COMDATEROOT=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT | |
| + setpdy.sh[53]'[' -z 20211220 ']' | |
| + setpdy.sh[57]sed 's/[0-9]\{8\}/20211220/' /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT/date/t18z | |
| sed: can't read /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT/date/t18z: No such file or directory | |
| ++ jjob_header.sh[97]true | |
| ++ jjob_header.sh[98]source ./PDY | |
| /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/ush/jjob_header.sh: line 98: ./PDY: No such file or directory | |
| ++ jjob_header.sh[98]true | |
| ++ jjob_header.sh[104]export EXPDIR=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/EXPDIR/C96C48mx500_S2SW_cyc_gfs_92fcac6c | |
| ++ jjob_header.sh[104]EXPDIR=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/EXPDIR/C96C48mx500_S2SW_cyc_gfs_92fcac6c | |
| ++ jjob_header.sh[105]for config in "${configs[@]:-''}" | |
| ++ jjob_header.sh[106]source /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/EXPDIR/C96C48mx500_S2SW_cyc_gfs_92fcac6c/config.base | |
| +++ config.base[6]echo 'BEGIN: config.base' | |
| BEGIN: config.base | |
| +++ config.base[9]export machine=ORION | |
| +++ config.base[9]machine=ORION | |
| +++ config.base[12]export RUN_ENVIR=emc | |
| +++ config.base[12]RUN_ENVIR=emc | |
| +++ config.base[15]export ACCOUNT=fv3-cpu | |
| +++ config.base[15]ACCOUNT=fv3-cpu | |
| +++ config.base[16]export QUEUE=batch | |
| +++ config.base[16]QUEUE=batch | |
| +++ config.base[17]export QUEUE_SERVICE=batch | |
| +++ config.base[17]QUEUE_SERVICE=batch | |
| +++ config.base[18]export QUEUE_DTN=batch | |
| +++ config.base[18]QUEUE_DTN=batch | |
| +++ config.base[19]export PARTITION_BATCH=orion | |
| +++ config.base[19]PARTITION_BATCH=orion | |
| +++ config.base[20]export PARTITION_SERVICE=service | |
| +++ config.base[20]PARTITION_SERVICE=service | |
| +++ config.base[21]export PARTITION_DTN= | |
| +++ config.base[21]PARTITION_DTN= | |
| +++ config.base[22]export RESERVATION= | |
| +++ config.base[22]RESERVATION= | |
| +++ config.base[23]export CLUSTERS= | |
| +++ config.base[23]CLUSTERS= | |
| +++ config.base[24]export CLUSTERS_SERVICE= | |
| +++ config.base[24]CLUSTERS_SERVICE= | |
| +++ config.base[25]export CLUSTERS_DTN= | |
| +++ config.base[25]CLUSTERS_DTN= | |
| +++ config.base[28]export HPSS_PROJECT=emc-global | |
| +++ config.base[28]HPSS_PROJECT=emc-global | |
| +++ config.base[31]export HOMEgfs=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow | |
| +++ config.base[31]HOMEgfs=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow | |
| +++ config.base[32]export EXECgfs=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/exec | |
| +++ config.base[32]EXECgfs=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/exec | |
| +++ config.base[33]export FIXgfs=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix | |
| +++ config.base[33]FIXgfs=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix | |
| +++ config.base[34]export PARMgfs=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm | |
| +++ config.base[34]PARMgfs=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm | |
| +++ config.base[35]export SCRgfs=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/scripts | |
| +++ config.base[35]SCRgfs=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/scripts | |
| +++ config.base[36]export USHgfs=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/ush | |
| +++ config.base[36]USHgfs=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/ush | |
| +++ config.base[38]export FIXam=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/am | |
| +++ config.base[38]FIXam=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/am | |
| +++ config.base[39]export FIXaer=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/aer | |
| +++ config.base[39]FIXaer=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/aer | |
| +++ config.base[40]export FIXcpl=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/cpl | |
| +++ config.base[40]FIXcpl=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/cpl | |
| +++ config.base[41]export FIXlut=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/lut | |
| +++ config.base[41]FIXlut=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/lut | |
| +++ config.base[42]export FIXcice=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/cice | |
| +++ config.base[42]FIXcice=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/cice | |
| +++ config.base[43]export FIXmom=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/mom6 | |
| +++ config.base[43]FIXmom=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/mom6 | |
| +++ config.base[44]export FIXreg2grb2=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/reg2grb2 | |
| +++ config.base[44]FIXreg2grb2=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/reg2grb2 | |
| +++ config.base[45]export FIXgdas=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/gdas | |
| +++ config.base[45]FIXgdas=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/gdas | |
| +++ config.base[50]export PACKAGEROOT=/work2/noaa/global/role-global/nwpara | |
| +++ config.base[50]PACKAGEROOT=/work2/noaa/global/role-global/nwpara | |
| +++ config.base[51]export COMROOT=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT | |
| +++ config.base[51]COMROOT=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT | |
| +++ config.base[52]export COMINsyn=/work2/noaa/global/role-global/com/gfs/prod/syndat | |
| +++ config.base[52]COMINsyn=/work2/noaa/global/role-global/com/gfs/prod/syndat | |
| +++ config.base[53]export DMPDIR=/work/noaa/rstprod/dump | |
| +++ config.base[53]DMPDIR=/work/noaa/rstprod/dump | |
| +++ config.base[57]export COMINecmwf=/work2/noaa/global/role-global/data/external_gempak/ecmwf | |
| +++ config.base[57]COMINecmwf=/work2/noaa/global/role-global/data/external_gempak/ecmwf | |
| +++ config.base[58]export COMINnam=/work2/noaa/global/role-global/data/external_gempak/nam | |
| +++ config.base[58]COMINnam=/work2/noaa/global/role-global/data/external_gempak/nam | |
| +++ config.base[59]export COMINukmet=/work2/noaa/global/role-global/data/external_gempak/ukmet | |
| +++ config.base[59]COMINukmet=/work2/noaa/global/role-global/data/external_gempak/ukmet | |
| +++ config.base[62]export HOMEDIR=/work2/noaa/global/role-global | |
| +++ config.base[62]HOMEDIR=/work2/noaa/global/role-global | |
| +++ config.base[63]export STMP=/work2/noaa/global/role-global/stmp/ORION | |
| +++ config.base[63]STMP=/work2/noaa/global/role-global/stmp/ORION | |
| +++ config.base[64]export PTMP=/work2/noaa/stmp/role-global/ORION | |
| +++ config.base[64]PTMP=/work2/noaa/stmp/role-global/ORION | |
| +++ config.base[65]export NOSCRUB=/work2/noaa/global/role-global | |
| +++ config.base[65]NOSCRUB=/work2/noaa/global/role-global | |
| +++ config.base[68]export BASE_GIT=/work2/noaa/global/role-global/git | |
| +++ config.base[68]BASE_GIT=/work2/noaa/global/role-global/git | |
| +++ config.base[71]export BASE_DATA=/work2/noaa/global/role-global/data | |
| +++ config.base[71]BASE_DATA=/work2/noaa/global/role-global/data | |
| +++ config.base[74]export DO_PREP_SFC=NO | |
| +++ config.base[74]DO_PREP_SFC=NO | |
| +++ config.base[77]export DO_GOES=NO | |
| +++ config.base[77]DO_GOES=NO | |
| +++ config.base[78]export DO_BUFRSND=NO | |
| +++ config.base[78]DO_BUFRSND=NO | |
| +++ config.base[79]export DO_GEMPAK=NO | |
| +++ config.base[79]DO_GEMPAK=NO | |
| +++ config.base[80]export DO_AWIPS=NO | |
| +++ config.base[80]DO_AWIPS=NO | |
| +++ config.base[81]export DO_NPOESS=NO | |
| +++ config.base[81]DO_NPOESS=NO | |
| +++ config.base[82]export DO_TRACKER=YES | |
| +++ config.base[82]DO_TRACKER=YES | |
| +++ config.base[83]export DO_GENESIS=YES | |
| +++ config.base[83]DO_GENESIS=YES | |
| +++ config.base[84]export DO_GENESIS_FSU=NO | |
| +++ config.base[84]DO_GENESIS_FSU=NO | |
| +++ config.base[85]export DO_VERFOZN=YES | |
| +++ config.base[85]DO_VERFOZN=YES | |
| +++ config.base[86]export DO_VERFRAD=YES | |
| +++ config.base[86]DO_VERFRAD=YES | |
| +++ config.base[87]export DO_VMINMON=YES | |
| +++ config.base[87]DO_VMINMON=YES | |
| +++ config.base[88]export DO_ANLSTAT=NO | |
| +++ config.base[88]DO_ANLSTAT=NO | |
| +++ config.base[91]export MODE=cycled | |
| +++ config.base[91]MODE=cycled | |
| +++ config.base[92]export DO_TEST_MODE=NO | |
| +++ config.base[92]DO_TEST_MODE=NO | |
| +++ config.base[101]export FIXgsi=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/gsi | |
| +++ config.base[101]FIXgsi=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/gsi | |
| +++ config.base[102]export HOMEpost=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow | |
| +++ config.base[102]HOMEpost=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow | |
| +++ config.base[103]export HOMEobsproc=/work2/noaa/global/role-global/git/obsproc/v | |
| +++ config.base[103]HOMEobsproc=/work2/noaa/global/role-global/git/obsproc/v | |
| +++ config.base[106]export NMV=/bin/mv | |
| +++ config.base[106]NMV=/bin/mv | |
| +++ config.base[107]export 'NLN=/bin/ln -sf' | |
| +++ config.base[107]NLN='/bin/ln -sf' | |
| +++ config.base[108]export VERBOSE=YES | |
| +++ config.base[108]VERBOSE=YES | |
| +++ config.base[109]export KEEPDATA=NO | |
| +++ config.base[109]KEEPDATA=NO | |
| +++ config.base[110]export DEBUG_POSTSCRIPT=NO | |
| +++ config.base[110]DEBUG_POSTSCRIPT=NO | |
| +++ config.base[111]export CHGRP_RSTPROD=YES | |
| +++ config.base[111]CHGRP_RSTPROD=YES | |
| +++ config.base[112]export 'CHGRP_CMD=chgrp rstprod' | |
| +++ config.base[112]CHGRP_CMD='chgrp rstprod' | |
| +++ config.base[113]export NCDUMP=/work2/noaa/da/python/opt/core/miniconda3/4.6.14/envs/gdasapp/bin/ncdump/bin/ncdump | |
| +++ config.base[113]NCDUMP=/work2/noaa/da/python/opt/core/miniconda3/4.6.14/envs/gdasapp/bin/ncdump/bin/ncdump | |
| +++ config.base[114]export NCLEN=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/ush/getncdimlen | |
| +++ config.base[114]NCLEN=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/ush/getncdimlen | |
| +++ config.base[117]export BASE_ENV=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/env | |
| +++ config.base[117]BASE_ENV=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/env | |
| +++ config.base[120]export SDATE=2021122012 | |
| +++ config.base[120]SDATE=2021122012 | |
| +++ config.base[121]export EDATE=2021122100 | |
| +++ config.base[121]EDATE=2021122100 | |
| +++ config.base[122]export EXP_WARM_START=.false. | |
| +++ config.base[122]EXP_WARM_START=.false. | |
| +++ config.base[123]export assim_freq=6 | |
| +++ config.base[123]assim_freq=6 | |
| +++ config.base[124]export PSLOT=C96C48mx500_S2SW_cyc_gfs_92fcac6c | |
| +++ config.base[124]PSLOT=C96C48mx500_S2SW_cyc_gfs_92fcac6c | |
| +++ config.base[125]export EXPDIR=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/EXPDIR/C96C48mx500_S2SW_cyc_gfs_92fcac6c | |
| +++ config.base[125]EXPDIR=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/EXPDIR/C96C48mx500_S2SW_cyc_gfs_92fcac6c | |
| +++ config.base[126]export ROTDIR=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT/C96C48mx500_S2SW_cyc_gfs_92fcac6c | |
| +++ config.base[126]ROTDIR=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT/C96C48mx500_S2SW_cyc_gfs_92fcac6c | |
| +++ config.base[127]export DUMP_SUFFIX= | |
| +++ config.base[127]DUMP_SUFFIX= | |
| +++ config.base[128][[ 2021122018 -ge 2019092100 ]] | |
| +++ config.base[128][[ 2021122018 -le 2019110700 ]] | |
| +++ config.base[131]export ARCDIR=/work2/noaa/global/role-global/archive/C96C48mx500_S2SW_cyc_gfs_92fcac6c | |
| +++ config.base[131]ARCDIR=/work2/noaa/global/role-global/archive/C96C48mx500_S2SW_cyc_gfs_92fcac6c | |
| +++ config.base[132]export ATARDIR=/NCEPDEV/emc-global/1year/role-global/ORION/scratch/C96C48mx500_S2SW_cyc_gfs_92fcac6c | |
| +++ config.base[132]ATARDIR=/NCEPDEV/emc-global/1year/role-global/ORION/scratch/C96C48mx500_S2SW_cyc_gfs_92fcac6c | |
| +++ config.base[133]export 'FETCHDIR={{ FETCHDIR }}' | |
| +++ config.base[133]FETCHDIR='{{ FETCHDIR }}' | |
| +++ config.base[136]export envir=prod | |
| +++ config.base[136]envir=prod | |
| +++ config.base[137]export NET=gfs | |
| +++ config.base[137]NET=gfs | |
| +++ config.base[138]export RUN=gdas | |
| +++ config.base[138]RUN=gdas | |
| +++ config.base[141]source /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/EXPDIR/C96C48mx500_S2SW_cyc_gfs_92fcac6c/config.com | |
| ++++ config.com[4]echo 'BEGIN: config.com' | |
| BEGIN: config.com | |
| ++++ config.com[38][[ emc == \n\c\o ]] | |
| ++++ config.com[43]COM_OBSPROC_TMPL='${DMPDIR}/${RUN}${DUMP_SUFFIX}.${YMD}/${HH}/atmos' | |
| ++++ config.com[44]COM_RTOFS_TMPL='${DMPDIR}' | |
| ++++ config.com[45]COM_TCVITAL_TMPL='${DMPDIR}/${RUN}.${YMD}/${HH}/atmos' | |
| ++++ config.com[47]declare -rx 'COM_OBS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/obs' | |
| ++++ config.com[48]declare -rx COM_OBSPROC_TMPL COM_RTOFS_TMPL | |
| ++++ config.com[50]COM_BASE='${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}' | |
| ++++ config.com[52]declare -rx 'COM_TOP_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}' | |
| ++++ config.com[54]declare -rx 'COM_CONF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/conf' | |
| ++++ config.com[55]declare -rx 'COM_OBS_JEDI=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/obs_jedi' | |
| ++++ config.com[57]declare -rx 'COM_ATMOS_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model/atmos/input' | |
| ++++ config.com[58]declare -rx 'COM_ATMOS_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model/atmos/restart' | |
| ++++ config.com[59]declare -rx 'COM_ATMOS_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/atmos' | |
| ++++ config.com[60]declare -rx 'COM_SNOW_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/snow' | |
| ++++ config.com[61]declare -rx 'COM_SNOW_ANLMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/snow/anlmon' | |
| ++++ config.com[62]declare -rx 'COM_ATMOS_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model/atmos/history' | |
| ++++ config.com[63]declare -rx 'COM_ATMOS_MASTER_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model/atmos/master' | |
| ++++ config.com[64]declare -rx 'COM_ATMOS_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/grib2' | |
| ++++ config.com[65]declare -rx 'COM_ATMOS_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/grib2/${GRID}' | |
| ++++ config.com[66]declare -rx 'COM_ATMOS_BUFR_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/bufr' | |
| ++++ config.com[67]declare -rx 'COM_ATMOS_GEMPAK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/gempak/${GRID}' | |
| ++++ config.com[68]declare -rx 'COM_ATMOS_GENESIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/genesis_vital' | |
| ++++ config.com[69]declare -rx 'COM_ATMOS_TRACK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/tracks' | |
| ++++ config.com[70]declare -rx 'COM_ATMOS_GOES_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/goes_sim' | |
| ++++ config.com[71]declare -rx 'COM_ATMOS_IMAGERY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/imagery' | |
| ++++ config.com[72]declare -rx 'COM_ATMOS_OZNMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/oznmon' | |
| ++++ config.com[73]declare -rx 'COM_ATMOS_RADMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/radmon' | |
| ++++ config.com[74]declare -rx 'COM_ATMOS_MINMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/minmon' | |
| ++++ config.com[75]declare -rx 'COM_ATMOS_ANLMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/anlmon' | |
| ++++ config.com[76]declare -rx 'COM_ATMOS_WMO_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/wmo' | |
| ++++ config.com[78]declare -rx 'COM_WAVE_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model/wave/restart' | |
| ++++ config.com[79]declare -rx 'COM_WAVE_PREP_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model/wave/prep' | |
| ++++ config.com[80]declare -rx 'COM_WAVE_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model/wave/history' | |
| ++++ config.com[81]declare -rx 'COM_WAVE_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/gridded' | |
| ++++ config.com[82]declare -rx 'COM_WAVE_GRID_RES_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/gridded/${GRDRESNAME}' | |
| ++++ config.com[83]declare -rx 'COM_WAVE_STATION_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/station' | |
| ++++ config.com[84]declare -rx 'COM_WAVE_GEMPAK_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/gempak' | |
| ++++ config.com[85]declare -rx 'COM_WAVE_WMO_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/wmo' | |
| ++++ config.com[87]declare -rx 'COM_OCEAN_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model/ocean/history' | |
| ++++ config.com[88]declare -rx 'COM_OCEAN_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model/ocean/restart' | |
| ++++ config.com[89]declare -rx 'COM_OCEAN_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model/ocean/input' | |
| ++++ config.com[90]declare -rx 'COM_OCEAN_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/ocean' | |
| ++++ config.com[91]declare -rx 'COM_OCEAN_ANLMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/anlmon' | |
| ++++ config.com[92]declare -rx 'COM_OCEAN_LETKF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/ocean/letkf' | |
| ++++ config.com[93]declare -rx 'COM_OCEAN_BMATRIX_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/bmatrix/ocean' | |
| ++++ config.com[94]declare -rx 'COM_OCEAN_NETCDF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/netcdf' | |
| ++++ config.com[95]declare -rx 'COM_OCEAN_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2' | |
| ++++ config.com[96]declare -rx 'COM_OCEAN_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2/${GRID}' | |
| ++++ config.com[98]declare -rx 'COM_ICE_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/ice' | |
| ++++ config.com[99]declare -rx 'COM_ICE_LETKF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/ice/letkf' | |
| ++++ config.com[100]declare -rx 'COM_ICE_ANLMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/anlmon' | |
| ++++ config.com[101]declare -rx 'COM_ICE_BMATRIX_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/bmatrix/ice' | |
| ++++ config.com[102]declare -rx 'COM_ICE_INPUT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model/ice/input' | |
| ++++ config.com[103]declare -rx 'COM_ICE_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model/ice/history' | |
| ++++ config.com[104]declare -rx 'COM_ICE_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model/ice/restart' | |
| ++++ config.com[105]declare -rx 'COM_ICE_NETCDF_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/netcdf' | |
| ++++ config.com[106]declare -rx 'COM_ICE_GRIB_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2' | |
| ++++ config.com[107]declare -rx 'COM_ICE_GRIB_GRID_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2/${GRID}' | |
| ++++ config.com[109]declare -rx 'COM_CHEM_HISTORY_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model/chem/history' | |
| ++++ config.com[110]declare -rx 'COM_CHEM_ANALYSIS_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/chem' | |
| ++++ config.com[111]declare -rx 'COM_CHEM_BMAT_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/analysis/chem/bmatrix' | |
| ++++ config.com[112]declare -rx 'COM_CHEM_ANLMON_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/chem/anlmon' | |
| ++++ config.com[114]declare -rx 'COM_MED_RESTART_TMPL=${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model/med/restart' | |
| +++ config.base[143]export LOGSCRIPT= | |
| +++ config.base[143]LOGSCRIPT= | |
| +++ config.base[145]export 'REDOUT=1>' | |
| +++ config.base[145]REDOUT='1>' | |
| +++ config.base[146]export 'REDERR=2>' | |
| +++ config.base[146]REDERR='2>' | |
| +++ config.base[148]export SENDECF=NO | |
| +++ config.base[148]SENDECF=NO | |
| +++ config.base[149]export SENDSDM=NO | |
| +++ config.base[149]SENDSDM=NO | |
| +++ config.base[150]export SENDDBN_NTC=NO | |
| +++ config.base[150]SENDDBN_NTC=NO | |
| +++ config.base[151]export SENDDBN=NO | |
| +++ config.base[151]SENDDBN=NO | |
| +++ config.base[152]export DBNROOT=/fakedbn | |
| +++ config.base[152]DBNROOT=/fakedbn | |
| +++ config.base[155]export APP=S2SW | |
| +++ config.base[155]APP=S2SW | |
| +++ config.base[157]shopt -s extglob | |
| +++ config.base[160]case "${RUN}" in | |
| +++ config.base[167]shopt -u extglob | |
| +++ config.base[170]export DO_ATM=YES | |
| +++ config.base[170]DO_ATM=YES | |
| +++ config.base[171]export DO_COUPLED=NO | |
| +++ config.base[171]DO_COUPLED=NO | |
| +++ config.base[172]export DO_WAVE=NO | |
| +++ config.base[172]DO_WAVE=NO | |
| +++ config.base[173]export DO_OCN=NO | |
| +++ config.base[173]DO_OCN=NO | |
| +++ config.base[174]export DO_ICE=NO | |
| +++ config.base[174]DO_ICE=NO | |
| +++ config.base[175]DO_AERO=NO | |
| +++ config.base[176]export DO_PREP_OBS_AERO=NO | |
| +++ config.base[176]DO_PREP_OBS_AERO=NO | |
| +++ config.base[177]aero_fcst_runs=gdas | |
| +++ config.base[178]aero_anl_runs='gdas gfs' | |
| +++ config.base[179]export DO_AERO_FCST=NO | |
| +++ config.base[179]DO_AERO_FCST=NO | |
| +++ config.base[180]export DO_AERO_ANL=NO | |
| +++ config.base[180]DO_AERO_ANL=NO | |
| +++ config.base[181]export DOBNDPNT_WAVE=YES | |
| +++ config.base[181]DOBNDPNT_WAVE=YES | |
| +++ config.base[182]export DOIBP_WAV=NO | |
| +++ config.base[182]DOIBP_WAV=NO | |
| +++ config.base[183]export FRAC_GRID=.true. | |
| +++ config.base[183]FRAC_GRID=.true. | |
| +++ config.base[184]export DO_NEST=NO | |
| +++ config.base[184]DO_NEST=NO | |
| +++ config.base[185][[ NO == \Y\E\S ]] | |
| +++ config.base[191]export ntiles=6 | |
| +++ config.base[191]ntiles=6 | |
| +++ config.base[192]export FIXugwd=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/ugwd | |
| +++ config.base[192]FIXugwd=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/ugwd | |
| +++ config.base[193]export FIXorog=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/orog | |
| +++ config.base[193]FIXorog=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/orog | |
| +++ config.base[197]export OPS_RES=C768 | |
| +++ config.base[197]OPS_RES=C768 | |
| +++ config.base[200]export LEVS=128 | |
| +++ config.base[200]LEVS=128 | |
| +++ config.base[201]export CASE=C96 | |
| +++ config.base[201]CASE=C96 | |
| +++ config.base[202]export CASE_ENS=C48 | |
| +++ config.base[202]CASE_ENS=C48 | |
| +++ config.base[203]export OCNRES=500 | |
| +++ config.base[203]OCNRES=500 | |
| +++ config.base[204]export ICERES=500 | |
| +++ config.base[204]ICERES=500 | |
| +++ config.base[207]case "${CASE}" in | |
| +++ config.base[212]export waveGRD=uglo_100km | |
| +++ config.base[212]waveGRD=uglo_100km | |
| +++ config.base[226]case "${APP}" in | |
| +++ config.base[242]export DO_COUPLED=YES | |
| +++ config.base[242]DO_COUPLED=YES | |
| +++ config.base[243]export DO_OCN=YES | |
| +++ config.base[243]DO_OCN=YES | |
| +++ config.base[244]export DO_ICE=YES | |
| +++ config.base[244]DO_ICE=YES | |
| +++ config.base[246][[ S2SW =~ A$ ]] | |
| +++ config.base[250][[ S2SW =~ ^S2SW ]] | |
| +++ config.base[251]export DO_WAVE=YES | |
| +++ config.base[251]DO_WAVE=YES | |
| +++ config.base[261][[ NO == \Y\E\S ]] | |
| +++ config.base[271][[ gdas =~ gdas ]] | |
| +++ config.base[272]export FHCYC=1 | |
| +++ config.base[272]FHCYC=1 | |
| +++ config.base[273]export FTSFS=10 | |
| +++ config.base[273]FTSFS=10 | |
| +++ config.base[279]export FHMIN=0 | |
| +++ config.base[279]FHMIN=0 | |
| +++ config.base[280]export FHMAX=9 | |
| +++ config.base[280]FHMAX=9 | |
| +++ config.base[281]export FHOUT=3 | |
| +++ config.base[281]FHOUT=3 | |
| +++ config.base[282]export FHOUT_OCN=3 | |
| +++ config.base[282]FHOUT_OCN=3 | |
| +++ config.base[283]export FHOUT_ICE=3 | |
| +++ config.base[283]FHOUT_ICE=3 | |
| +++ config.base[284]export FHOUT_AERO=3 | |
| +++ config.base[284]FHOUT_AERO=3 | |
| +++ config.base[287]export EUPD_CYC=both | |
| +++ config.base[287]EUPD_CYC=both | |
| +++ config.base[290]export INTERVAL_GFS=6 | |
| +++ config.base[290]INTERVAL_GFS=6 | |
| +++ config.base[291]export SDATE_GFS=2021122018 | |
| +++ config.base[291]SDATE_GFS=2021122018 | |
| +++ config.base[294]export FHMIN_GFS=0 | |
| +++ config.base[294]FHMIN_GFS=0 | |
| +++ config.base[295]export FHMAX_GFS=120 | |
| +++ config.base[295]FHMAX_GFS=120 | |
| +++ config.base[297]breakpnts= | |
| +++ config.base[298]export FCST_SEGMENTS=0,120 | |
| +++ config.base[298]FCST_SEGMENTS=0,120 | |
| +++ config.base[299]export FHOUT_GFS=3 | |
| +++ config.base[299]FHOUT_GFS=3 | |
| +++ config.base[300]export FHMAX_HF_GFS=48 | |
| +++ config.base[300]FHMAX_HF_GFS=48 | |
| +++ config.base[301]export FHMAX_HF_GFS=48 | |
| +++ config.base[301]FHMAX_HF_GFS=48 | |
| +++ config.base[302]export FHOUT_HF_GFS=1 | |
| +++ config.base[302]FHOUT_HF_GFS=1 | |
| +++ config.base[305]export FHMIN_WAV=0 | |
| +++ config.base[305]FHMIN_WAV=0 | |
| +++ config.base[306]export FHOUT_WAV=1 | |
| +++ config.base[306]FHOUT_WAV=1 | |
| +++ config.base[307]export FHMAX_WAV=9 | |
| +++ config.base[307]FHMAX_WAV=9 | |
| +++ config.base[308]export FHMAX_WAV=9 | |
| +++ config.base[308]FHMAX_WAV=9 | |
| +++ config.base[309]export FHOUT_WAV_GFS=3 | |
| +++ config.base[309]FHOUT_WAV_GFS=3 | |
| +++ config.base[310]export FHMAX_WAV_GFS=120 | |
| +++ config.base[310]FHMAX_WAV_GFS=120 | |
| +++ config.base[311]export FHOUT_HF_WAV=1 | |
| +++ config.base[311]FHOUT_HF_WAV=1 | |
| +++ config.base[312]export FHMAX_HF_WAV=48 | |
| +++ config.base[312]FHMAX_HF_WAV=48 | |
| +++ config.base[313]export FHMAX_HF_WAV=48 | |
| +++ config.base[313]FHMAX_HF_WAV=48 | |
| +++ config.base[316]export FHOUT_OCN_GFS=6 | |
| +++ config.base[316]FHOUT_OCN_GFS=6 | |
| +++ config.base[317]export FHOUT_ICE_GFS=6 | |
| +++ config.base[317]FHOUT_ICE_GFS=6 | |
| +++ config.base[320]export ILPOST=1 | |
| +++ config.base[320]ILPOST=1 | |
| +++ config.base[321](( FHMAX_HF_GFS < 120 )) | |
| +++ config.base[322]export ILPOST=3 | |
| +++ config.base[322]ILPOST=3 | |
| +++ config.base[326]export FHMAX_GOES=180 | |
| +++ config.base[326]FHMAX_GOES=180 | |
| +++ config.base[327]export FHOUT_GOES=3 | |
| +++ config.base[327]FHOUT_GOES=3 | |
| +++ config.base[328](( FHMAX_GOES > FHMAX_GFS )) | |
| +++ config.base[329]export FHMAX_GOES=120 | |
| +++ config.base[329]FHMAX_GOES=120 | |
| +++ config.base[333]export restart_interval_gfs=12 | |
| +++ config.base[333]restart_interval_gfs=12 | |
| +++ config.base[338]export QUILTING=.true. | |
| +++ config.base[338]QUILTING=.true. | |
| +++ config.base[339]export OUTPUT_GRID=gaussian_grid | |
| +++ config.base[339]OUTPUT_GRID=gaussian_grid | |
| +++ config.base[340]export WRITE_DOPOST=.true. | |
| +++ config.base[340]WRITE_DOPOST=.true. | |
| +++ config.base[341]export WRITE_NSFLIP=.true. | |
| +++ config.base[341]WRITE_NSFLIP=.true. | |
| +++ config.base[344]export DOIAU=YES | |
| +++ config.base[344]DOIAU=YES | |
| +++ config.base[345]export IAUFHRS=3,6,9 | |
| +++ config.base[345]IAUFHRS=3,6,9 | |
| +++ config.base[346]export IAU_FHROT=3 | |
| +++ config.base[346]IAU_FHROT=3 | |
| +++ config.base[347]export IAU_DELTHRS=6 | |
| +++ config.base[347]IAU_DELTHRS=6 | |
| +++ config.base[348]export IAU_OFFSET=6 | |
| +++ config.base[348]IAU_OFFSET=6 | |
| +++ config.base[349]export DOIAU_ENKF=YES | |
| +++ config.base[349]DOIAU_ENKF=YES | |
| +++ config.base[350]export IAUFHRS_ENKF=3,6,9 | |
| +++ config.base[350]IAUFHRS_ENKF=3,6,9 | |
| +++ config.base[351]export IAU_DELTHRS_ENKF=6 | |
| +++ config.base[351]IAU_DELTHRS_ENKF=6 | |
| +++ config.base[354]export lobsdiag_forenkf=.true. | |
| +++ config.base[354]lobsdiag_forenkf=.true. | |
| +++ config.base[362]export imp_physics=8 | |
| +++ config.base[362]imp_physics=8 | |
| +++ config.base[366]export DO_JEDIATMVAR=NO | |
| +++ config.base[366]DO_JEDIATMVAR=NO | |
| +++ config.base[367]export DO_JEDIATMENS=NO | |
| +++ config.base[367]DO_JEDIATMENS=NO | |
| +++ config.base[368]export DO_JEDIOCNVAR=YES | |
| +++ config.base[368]DO_JEDIOCNVAR=YES | |
| +++ config.base[369]export DO_JEDISNOWDA=YES | |
| +++ config.base[369]DO_JEDISNOWDA=YES | |
| +++ config.base[370]export DO_MERGENSST=NO | |
| +++ config.base[370]DO_MERGENSST=NO | |
| +++ config.base[371]export DO_STARTMEM_FROM_JEDIICE=YES | |
| +++ config.base[371]DO_STARTMEM_FROM_JEDIICE=YES | |
| +++ config.base[374]export DOHYBVAR=YES | |
| +++ config.base[374]DOHYBVAR=YES | |
| +++ config.base[375]export DOHYBVAR_OCN=YES | |
| +++ config.base[375]DOHYBVAR_OCN=YES | |
| +++ config.base[376]export DOLETKF_OCN=NO | |
| +++ config.base[376]DOLETKF_OCN=NO | |
| +++ config.base[377]export NMEM_ENS=2 | |
| +++ config.base[377]NMEM_ENS=2 | |
| +++ config.base[378]export SMOOTH_ENKF=NO | |
| +++ config.base[378]SMOOTH_ENKF=NO | |
| +++ config.base[379]export l4densvar=.true. | |
| +++ config.base[379]l4densvar=.true. | |
| +++ config.base[380]export lwrite4danl=.true. | |
| +++ config.base[380]lwrite4danl=.true. | |
| +++ config.base[381]export DO_CALC_INCREMENT=NO | |
| +++ config.base[381]DO_CALC_INCREMENT=NO | |
| +++ config.base[384]export NMEM_ENS_GFS=2 | |
| +++ config.base[384]NMEM_ENS_GFS=2 | |
| +++ config.base[385]export NMEM_ENS_GFS_OFFSET=0 | |
| +++ config.base[385]NMEM_ENS_GFS_OFFSET=0 | |
| +++ config.base[386]export DO_CALC_INCREMENT_ENKF_GFS=NO | |
| +++ config.base[386]DO_CALC_INCREMENT_ENKF_GFS=NO | |
| +++ config.base[389][[ YES = \Y\E\S ]] | |
| +++ config.base[390]export FHMIN_ENKF=3 | |
| +++ config.base[390]FHMIN_ENKF=3 | |
| +++ config.base[391]export FHMAX_ENKF=9 | |
| +++ config.base[391]FHMAX_ENKF=9 | |
| +++ config.base[392]export FHMAX_ENKF_GFS=12 | |
| +++ config.base[392]FHMAX_ENKF_GFS=12 | |
| +++ config.base[393]export FHOUT_ENKF_GFS=3 | |
| +++ config.base[393]FHOUT_ENKF_GFS=3 | |
| +++ config.base[394][[ .true. = \.\t\r\u\e\. ]] | |
| +++ config.base[395]export FHOUT=1 | |
| +++ config.base[395]FHOUT=1 | |
| +++ config.base[396]export FHOUT_ENKF=1 | |
| +++ config.base[396]FHOUT_ENKF=1 | |
| +++ config.base[403][[ YES == \N\O ]] | |
| +++ config.base[411]export ENKF_SPREAD=YES | |
| +++ config.base[411]ENKF_SPREAD=YES | |
| +++ config.base[414]export DO_GSISOILDA=YES | |
| +++ config.base[414]DO_GSISOILDA=YES | |
| +++ config.base[415]export DO_LAND_IAU=.true. | |
| +++ config.base[415]DO_LAND_IAU=.true. | |
| +++ config.base[416]export LSOIL_INCR=2 | |
| +++ config.base[416]LSOIL_INCR=2 | |
| +++ config.base[419][[ cycled = \c\y\c\l\e\d ]] | |
| +++ config.base[419][[ 2021122012 = \2\0\2\1\1\2\2\0\1\8 ]] | |
| +++ config.base[419][[ YES = \N\O ]] | |
| +++ config.base[419][[ cycled = \f\o\r\e\c\a\s\t\-\o\n\l\y ]] | |
| +++ config.base[426][[ YES = \N\O ]] | |
| +++ config.base[430][[ YES == \Y\E\S ]] | |
| +++ config.base[431]export restart_interval_enkfgdas=3 | |
| +++ config.base[431]restart_interval_enkfgdas=3 | |
| +++ config.base[436]export restart_interval_enkfgfs=3 | |
| +++ config.base[436]restart_interval_enkfgfs=3 | |
| +++ config.base[438][[ YES == \Y\E\S ]] | |
| +++ config.base[439]export restart_interval_gdas=3 | |
| +++ config.base[439]restart_interval_gdas=3 | |
| +++ config.base[445]export DONST=YES | |
| +++ config.base[445]DONST=YES | |
| +++ config.base[446][[ YES = \Y\E\S ]] | |
| +++ config.base[446]export 'FNTSFA= ' | |
| +++ config.base[446]FNTSFA=' ' | |
| +++ config.base[449]export nst_anl=.true. | |
| +++ config.base[449]nst_anl=.true. | |
| +++ config.base[452]export MAKE_NSSTBUFR=NO | |
| +++ config.base[452]MAKE_NSSTBUFR=NO | |
| +++ config.base[455]export MAKE_ACFTBUFR=NO | |
| +++ config.base[455]MAKE_ACFTBUFR=NO | |
| +++ config.base[458]export 'INCREMENTS_TO_ZERO='\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
| +++ config.base[458]INCREMENTS_TO_ZERO=''\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
| +++ config.base[461]export 'INCVARS_ZERO_STRAT='\''sphum_inc'\'','\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
| +++ config.base[461]INCVARS_ZERO_STRAT=''\''sphum_inc'\'','\''liq_wat_inc'\'','\''icmr_inc'\'','\''rwmr_inc'\'','\''snmr_inc'\'','\''grle_inc'\''' | |
| +++ config.base[462]export INCVARS_EFOLD=5 | |
| +++ config.base[462]INCVARS_EFOLD=5 | |
| +++ config.base[467]export netcdf_diag=.true. | |
| +++ config.base[467]netcdf_diag=.true. | |
| +++ config.base[468]export binary_diag=.false. | |
| +++ config.base[468]binary_diag=.false. | |
| +++ config.base[471]export DO_CA=YES | |
| +++ config.base[471]DO_CA=YES | |
| +++ config.base[474]export DO_METP=YES | |
| +++ config.base[474]DO_METP=YES | |
| +++ config.base[475]export DO_FIT2OBS=YES | |
| +++ config.base[475]DO_FIT2OBS=YES | |
| +++ config.base[478]export FHMAX_FITS=132 | |
| +++ config.base[478]FHMAX_FITS=132 | |
| +++ config.base[479][[ 132 -gt 120 ]] | |
| +++ config.base[480]export FHMAX_FITS=120 | |
| +++ config.base[480]FHMAX_FITS=120 | |
| +++ config.base[485]export DO_FETCH_HPSS=NO | |
| +++ config.base[485]DO_FETCH_HPSS=NO | |
| +++ config.base[486]export DO_FETCH_LOCAL=NO | |
| +++ config.base[486]DO_FETCH_LOCAL=NO | |
| +++ config.base[489]export DO_ARCHCOM=NO | |
| +++ config.base[489]DO_ARCHCOM=NO | |
| +++ config.base[490]export ARCHCOM_TO=globus_hpss | |
| +++ config.base[490]ARCHCOM_TO=globus_hpss | |
| +++ config.base[493]export CLIENT_GLOBUS_UUID=869912fe-f6de-46c0-af10-b22efd84a022 | |
| +++ config.base[493]CLIENT_GLOBUS_UUID=869912fe-f6de-46c0-af10-b22efd84a022 | |
| +++ config.base[496][[ NO = \Y\E\S ]] | |
| +++ config.base[503][[ NO = \Y\E\S ]] | |
| +++ config.base[503][[ YES = \Y\E\S ]] | |
| +++ config.base[504]export DO_ANLSTAT=YES | |
| +++ config.base[504]DO_ANLSTAT=YES | |
| +++ config.base[509]export REPLAY_ICS=NO | |
| +++ config.base[509]REPLAY_ICS=NO | |
| +++ config.base[510]export OFFSET_START_HOUR=0 | |
| +++ config.base[510]OFFSET_START_HOUR=0 | |
| +++ config.base[513]export NUM_SND_COLLECTIVES=9 | |
| +++ config.base[513]NUM_SND_COLLECTIVES=9 | |
| +++ config.base[515]echo 'END: config.base' | |
| END: config.base | |
| ++ jjob_header.sh[106]true | |
| ++ jjob_header.sh[107]export err=0 | |
| ++ jjob_header.sh[107]err=0 | |
| ++ jjob_header.sh[108][[ 0 -ne 0 ]] | |
| ++ jjob_header.sh[105]for config in "${configs[@]:-''}" | |
| ++ jjob_header.sh[106]source /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/EXPDIR/C96C48mx500_S2SW_cyc_gfs_92fcac6c/config.marineanl | |
| +++ config.marineanl[6]echo 'BEGIN: config.marineanl' | |
| BEGIN: config.marineanl | |
| +++ config.marineanl[8]export JEDI_CONFIG_YAML_BMAT=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca_bmat_jedi_config.yaml.j2 | |
| +++ config.marineanl[8]JEDI_CONFIG_YAML_BMAT=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca_bmat_jedi_config.yaml.j2 | |
| +++ config.marineanl[9]export JEDI_CONFIG_YAML_ANALYSIS=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca_analysis_jedi_config.yaml.j2 | |
| +++ config.marineanl[9]JEDI_CONFIG_YAML_ANALYSIS=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca_analysis_jedi_config.yaml.j2 | |
| +++ config.marineanl[10]export JCB_ALGO_YAML_VAR=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/jcb-prototype_3dfgat.yaml.j2 | |
| +++ config.marineanl[10]JCB_ALGO_YAML_VAR=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/jcb-prototype_3dfgat.yaml.j2 | |
| +++ config.marineanl[12]export MARINE_OBS_YAML_DIR=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/obs/config | |
| +++ config.marineanl[12]MARINE_OBS_YAML_DIR=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/obs/config | |
| +++ config.marineanl[13]export MARINE_OBS_LIST_YAML=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/obs/obs_list.yaml.j2 | |
| +++ config.marineanl[13]MARINE_OBS_LIST_YAML=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/obs/obs_list.yaml.j2 | |
| +++ config.marineanl[14]export SOCA_INPUT_FIX_DIR=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/gdas/soca/72x35x25/soca | |
| +++ config.marineanl[14]SOCA_INPUT_FIX_DIR=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/gdas/soca/72x35x25/soca | |
| +++ config.marineanl[15]export SOCA_ANL_GEOM=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/gdas/soca/72x35x25/soca | |
| +++ config.marineanl[15]SOCA_ANL_GEOM=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/gdas/soca/72x35x25/soca | |
| +++ config.marineanl[16]export SOCA_NINNER=1 | |
| +++ config.marineanl[16]SOCA_NINNER=1 | |
| +++ config.marineanl[17]export DOMAIN_STACK_SIZE=116640000 | |
| +++ config.marineanl[17]DOMAIN_STACK_SIZE=116640000 | |
| +++ config.marineanl[18]export SOCA_ENS_BKG_STAGE_YAML_TMPL=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/soca_ens_bkg_stage.yaml.j2 | |
| +++ config.marineanl[18]SOCA_ENS_BKG_STAGE_YAML_TMPL=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/soca_ens_bkg_stage.yaml.j2 | |
| +++ config.marineanl[19]export SOCA_FIX_YAML_TMPL=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/soca_fix_stage_500.yaml.j2 | |
| +++ config.marineanl[19]SOCA_FIX_YAML_TMPL=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/soca_fix_stage_500.yaml.j2 | |
| +++ config.marineanl[20]export MARINE_UTILITY_YAML_TMPL=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/soca_utils_stage.yaml.j2 | |
| +++ config.marineanl[20]MARINE_UTILITY_YAML_TMPL=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/soca_utils_stage.yaml.j2 | |
| +++ config.marineanl[21]export MARINE_ENSDA_STAGE_BKG_YAML_TMPL=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/ensda/stage_ens_mem.yaml.j2 | |
| +++ config.marineanl[21]MARINE_ENSDA_STAGE_BKG_YAML_TMPL=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/ensda/stage_ens_mem.yaml.j2 | |
| +++ config.marineanl[22]export MARINE_DET_STAGE_BKG_YAML_TMPL=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/soca_det_bkg_stage.yaml.j2 | |
| +++ config.marineanl[22]MARINE_DET_STAGE_BKG_YAML_TMPL=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/soca_det_bkg_stage.yaml.j2 | |
| +++ config.marineanl[23]export MARINE_DET_STAGE_FILES_YAML_TMPL=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/soca_det_files_stage.yaml.j2 | |
| +++ config.marineanl[23]MARINE_DET_STAGE_FILES_YAML_TMPL=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/soca_det_files_stage.yaml.j2 | |
| +++ config.marineanl[24]export MARINE_DET_FINALIZE_YAML_TMPL=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/soca_det_finalize.yaml.j2 | |
| +++ config.marineanl[24]MARINE_DET_FINALIZE_YAML_TMPL=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/soca_det_finalize.yaml.j2 | |
| +++ config.marineanl[25]export MARINE_JCB_GDAS_ALGO=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/jcb-gdas/algorithm/marine | |
| +++ config.marineanl[25]MARINE_JCB_GDAS_ALGO=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/jcb-gdas/algorithm/marine | |
| +++ config.marineanl[26]export MARINE_JCB_GDAS_OBS=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/jcb-gdas/observations/marine | |
| +++ config.marineanl[26]MARINE_JCB_GDAS_OBS=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/jcb-gdas/observations/marine | |
| +++ config.marineanl[28]echo 'END: config.marineanl' | |
| END: config.marineanl | |
| ++ jjob_header.sh[106]true | |
| ++ jjob_header.sh[107]export err=0 | |
| ++ jjob_header.sh[107]err=0 | |
| ++ jjob_header.sh[108][[ 0 -ne 0 ]] | |
| ++ jjob_header.sh[105]for config in "${configs[@]:-''}" | |
| ++ jjob_header.sh[106]source /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/EXPDIR/C96C48mx500_S2SW_cyc_gfs_92fcac6c/config.marineanlfinal | |
| +++ config.marineanlfinal[6]echo 'BEGIN: config.marineanlfinal' | |
| BEGIN: config.marineanlfinal | |
| +++ config.marineanlfinal[9]. /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/EXPDIR/C96C48mx500_S2SW_cyc_gfs_92fcac6c/config.resources marineanlfinal | |
| ++++ config.resources[10](( 1 != 1 )) | |
| ++++ config.resources[34]step=marineanlfinal | |
| ++++ config.resources[36]echo 'BEGIN: config.resources' | |
| BEGIN: config.resources | |
| ++++ config.resources[38]case ${machine} in | |
| ++++ config.resources[61]max_tasks_per_node=40 | |
| ++++ config.resources[63]mem_node_max=180GB | |
| ++++ config.resources[106]export max_tasks_per_node | |
| ++++ config.resources[108]case ${step} in | |
| ++++ config.resources[665]walltime=00:30:00 | |
| ++++ config.resources[666]ntasks=40 | |
| ++++ config.resources[667]threads_per_task=1 | |
| ++++ config.resources[668]tasks_per_node=40 | |
| ++++ config.resources[1400][[ -f /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/EXPDIR/C96C48mx500_S2SW_cyc_gfs_92fcac6c/config.resources.ORION ]] | |
| ++++ config.resources[1401]source /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/EXPDIR/C96C48mx500_S2SW_cyc_gfs_92fcac6c/config.resources.ORION | |
| +++++ config.resources.ORION[5]case ${step} in | |
| ++++ config.resources[1405]for resource_var in threads_per_task ntasks tasks_per_node NTASKS memory walltime | |
| ++++ config.resources[1406]run_resource_var=threads_per_task_gdas | |
| ++++ config.resources[1407][[ -n '' ]] | |
| ++++ config.resources[1409][[ -n 0 ]] | |
| ++++ config.resources[1410]export threads_per_task | |
| ++++ config.resources[1405]for resource_var in threads_per_task ntasks tasks_per_node NTASKS memory walltime | |
| ++++ config.resources[1406]run_resource_var=ntasks_gdas | |
| ++++ config.resources[1407][[ -n '' ]] | |
| ++++ config.resources[1409][[ -n 0 ]] | |
| ++++ config.resources[1410]export ntasks | |
| ++++ config.resources[1405]for resource_var in threads_per_task ntasks tasks_per_node NTASKS memory walltime | |
| ++++ config.resources[1406]run_resource_var=tasks_per_node_gdas | |
| ++++ config.resources[1407][[ -n '' ]] | |
| ++++ config.resources[1409][[ -n 0 ]] | |
| ++++ config.resources[1410]export tasks_per_node | |
| ++++ config.resources[1405]for resource_var in threads_per_task ntasks tasks_per_node NTASKS memory walltime | |
| ++++ config.resources[1406]run_resource_var=NTASKS_gdas | |
| ++++ config.resources[1407][[ -n '' ]] | |
| ++++ config.resources[1409][[ -n '' ]] | |
| ++++ config.resources[1405]for resource_var in threads_per_task ntasks tasks_per_node NTASKS memory walltime | |
| ++++ config.resources[1406]run_resource_var=memory_gdas | |
| ++++ config.resources[1407][[ -n '' ]] | |
| ++++ config.resources[1409][[ -n '' ]] | |
| ++++ config.resources[1405]for resource_var in threads_per_task ntasks tasks_per_node NTASKS memory walltime | |
| ++++ config.resources[1406]run_resource_var=walltime_gdas | |
| ++++ config.resources[1407][[ -n '' ]] | |
| ++++ config.resources[1409][[ -n 0 ]] | |
| ++++ config.resources[1410]export walltime | |
| ++++ config.resources[1414]echo 'END: config.resources' | |
| END: config.resources | |
| +++ config.marineanlfinal[10]echo 'END: config.marineanlfinal' | |
| END: config.marineanlfinal | |
| ++ jjob_header.sh[106]true | |
| ++ jjob_header.sh[107]export err=0 | |
| ++ jjob_header.sh[107]err=0 | |
| ++ jjob_header.sh[108][[ 0 -ne 0 ]] | |
| ++ jjob_header.sh[117]source /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/env/ORION.env marineanlfinal | |
| +++ ORION.env[3][[ 1 -ne 1 ]] | |
| +++ ORION.env[10]step=marineanlfinal | |
| +++ ORION.env[12]export 'launcher=srun -l --export=ALL --hint=nomultithread' | |
| +++ ORION.env[12]launcher='srun -l --export=ALL --hint=nomultithread' | |
| +++ ORION.env[13]export 'mpmd_opt=--multi-prog --output=mpmd.%j.%t.out' | |
| +++ ORION.env[13]mpmd_opt='--multi-prog --output=mpmd.%j.%t.out' | |
| +++ ORION.env[16]export MPI_BUFS_PER_PROC=2048 | |
| +++ ORION.env[16]MPI_BUFS_PER_PROC=2048 | |
| +++ ORION.env[17]export MPI_BUFS_PER_HOST=2048 | |
| +++ ORION.env[17]MPI_BUFS_PER_HOST=2048 | |
| +++ ORION.env[18]export MPI_GROUP_MAX=256 | |
| +++ ORION.env[18]MPI_GROUP_MAX=256 | |
| +++ ORION.env[19]export MPI_MEMMAP_OFF=1 | |
| +++ ORION.env[19]MPI_MEMMAP_OFF=1 | |
| +++ ORION.env[20]export MP_STDOUTMODE=ORDERED | |
| +++ ORION.env[20]MP_STDOUTMODE=ORDERED | |
| +++ ORION.env[21]export KMP_AFFINITY=scatter | |
| +++ ORION.env[21]KMP_AFFINITY=scatter | |
| +++ ORION.env[22]export OMP_STACKSIZE=2048000 | |
| +++ ORION.env[22]OMP_STACKSIZE=2048000 | |
| +++ ORION.env[23]export NTHSTACK=1024000000 | |
| +++ ORION.env[23]NTHSTACK=1024000000 | |
| +++ ORION.env[26]ulimit -s unlimited | |
| +++ ORION.env[27]ulimit -a | |
| real-time non-blocking time (microseconds, -R) unlimited | |
| core file size (blocks, -c) 0 | |
| data seg size (kbytes, -d) unlimited | |
| scheduling priority (-e) 0 | |
| file size (blocks, -f) unlimited | |
| pending signals (-i) 754653 | |
| max locked memory (kbytes, -l) unlimited | |
| max memory size (kbytes, -m) 192512000 | |
| open files (-n) 131072 | |
| pipe size (512 bytes, -p) 8 | |
| POSIX message queues (bytes, -q) 819200 | |
| real-time priority (-r) 0 | |
| stack size (kbytes, -s) unlimited | |
| cpu time (seconds, -t) unlimited | |
| max user processes (-u) 754653 | |
| virtual memory (kbytes, -v) unlimited | |
| file locks (-x) unlimited | |
| +++ ORION.env[31][[ -n 40 ]] | |
| +++ ORION.env[31][[ -n 40 ]] | |
| +++ ORION.env[31][[ -n 40 ]] | |
| +++ ORION.env[32]max_threads_per_task=1 | |
| +++ ORION.env[33]NTHREADSmax=1 | |
| +++ ORION.env[34]NTHREADS1=1 | |
| +++ ORION.env[35][[ 1 -gt 1 ]] | |
| +++ ORION.env[38][[ 1 -gt 1 ]] | |
| +++ ORION.env[41]APRUN_default='srun -l --export=ALL --hint=nomultithread -n 40' | |
| +++ ORION.env[47][[ marineanlfinal = \p\r\e\p ]] | |
| +++ ORION.env[47][[ marineanlfinal = \p\r\e\p\b\u\f\r ]] | |
| +++ ORION.env[54][[ marineanlfinal = \p\r\e\p\_\e\m\i\s\s\i\o\n\s ]] | |
| +++ ORION.env[58][[ marineanlfinal = \w\a\v\e\i\n\i\t ]] | |
| +++ ORION.env[58][[ marineanlfinal = \w\a\v\e\p\r\e\p ]] | |
| +++ ORION.env[58][[ marineanlfinal = \w\a\v\e\p\o\s\t\s\b\s ]] | |
| +++ ORION.env[59][[ marineanlfinal = \w\a\v\e\p\o\s\t\b\n\d\p\n\t ]] | |
| +++ ORION.env[59][[ marineanlfinal = \w\a\v\e\p\o\s\t\p\n\t ]] | |
| +++ ORION.env[59][[ marineanlfinal == \w\a\v\e\p\o\s\t\b\n\d\p\n\t\b\l\l ]] | |
| +++ ORION.env[66][[ marineanlfinal = \a\t\m\a\n\l\v\a\r ]] | |
| +++ ORION.env[71][[ marineanlfinal = \a\t\m\e\n\s\a\n\l\o\b\s ]] | |
| +++ ORION.env[76][[ marineanlfinal = \a\t\m\e\n\s\a\n\l\s\o\l ]] | |
| +++ ORION.env[80][[ marineanlfinal = \a\t\m\e\n\s\a\n\l\l\e\t\k\f ]] | |
| +++ ORION.env[85][[ marineanlfinal = \a\t\m\e\n\s\a\n\l\f\v\3\i\n\c ]] | |
| +++ ORION.env[90][[ marineanlfinal = \a\e\r\o\a\n\l\v\a\r ]] | |
| +++ ORION.env[97][[ marineanlfinal = \a\e\r\o\a\n\l\g\e\n\b ]] | |
| +++ ORION.env[102][[ marineanlfinal = \p\r\e\p\o\b\s\a\e\r\o ]] | |
| +++ ORION.env[107][[ marineanlfinal = \s\n\o\w\a\n\l ]] | |
| +++ ORION.env[116][[ marineanlfinal = \e\s\n\o\w\a\n\l ]] | |
| +++ ORION.env[125][[ marineanlfinal = \a\t\m\a\n\l\f\v\3\i\n\c ]] | |
| +++ ORION.env[130][[ marineanlfinal = \m\a\r\i\n\e\b\m\a\t ]] | |
| +++ ORION.env[137][[ marineanlfinal = \m\a\r\i\n\e\a\n\l\v\a\r ]] | |
| +++ ORION.env[143][[ marineanlfinal = \m\a\r\i\n\e\a\n\l\c\h\k\p\t ]] | |
| +++ ORION.env[153][[ marineanlfinal = \o\c\n\a\n\a\l\e\c\e\n ]] | |
| +++ ORION.env[158][[ marineanlfinal = \m\a\r\i\n\e\a\n\l\l\e\t\k\f ]] | |
| +++ ORION.env[163][[ marineanlfinal = \a\n\l\s\t\a\t ]] | |
| +++ ORION.env[168][[ marineanlfinal = \e\c\e\n\_\f\v\3\j\e\d\i ]] | |
| +++ ORION.env[174][[ marineanlfinal = \a\n\a\l\c\a\l\c\_\f\v\3\j\e\d\i ]] | |
| +++ ORION.env[179][[ marineanlfinal = \a\n\a\l ]] | |
| +++ ORION.env[179][[ marineanlfinal = \a\n\a\l\c\a\l\c ]] | |
| +++ ORION.env[208][[ marineanlfinal = \s\f\c\a\n\l ]] | |
| +++ ORION.env[219][[ marineanlfinal = \o\f\f\l\i\n\e\a\n\l ]] | |
| +++ ORION.env[233][[ marineanlfinal = \e\o\b\s ]] | |
| +++ ORION.env[248][[ marineanlfinal = \e\u\p\d ]] | |
| +++ ORION.env[257][[ marineanlfinal = \f\c\s\t ]] | |
| +++ ORION.env[257][[ marineanlfinal = \e\f\c\s ]] | |
| +++ ORION.env[267][[ marineanlfinal = \u\p\p ]] | |
| +++ ORION.env[272][[ marineanlfinal = \a\t\m\o\s\_\p\r\o\d\u\c\t\s ]] | |
| +++ ORION.env[276][[ marineanlfinal = \o\c\e\a\n\i\c\e\_\p\r\o\d\u\c\t\s ]] | |
| +++ ORION.env[281][[ marineanlfinal = \e\c\e\n ]] | |
| +++ ORION.env[298][[ marineanlfinal = \e\s\f\c ]] | |
| +++ ORION.env[313][[ marineanlfinal = \e\p\o\s ]] | |
| +++ ORION.env[318][[ marineanlfinal = \p\o\s\t\s\n\d ]] | |
| +++ ORION.env[331][[ marineanlfinal = \a\w\i\p\s ]] | |
| +++ ORION.env[336][[ marineanlfinal = \g\e\m\p\a\k ]] | |
| +++ ORION.env[340][[ marineanlfinal = \f\i\t\2\o\b\s ]] | |
| ++ jjob_header.sh[117]true | |
| ++ jjob_header.sh[118]export err=0 | |
| ++ jjob_header.sh[118]err=0 | |
| ++ jjob_header.sh[119][[ 0 -ne 0 ]] | |
| + JGLOBAL_MARINE_ANALYSIS_FINALIZE[17]YMD=20211220 | |
| + JGLOBAL_MARINE_ANALYSIS_FINALIZE[17]HH=18 | |
| + JGLOBAL_MARINE_ANALYSIS_FINALIZE[17]declare_from_tmpl -rx COMIN_OBS:COM_OBS_TMPL | |
| + bash_utils.sh[39][[ NO == \N\O ]] | |
| + bash_utils.sh[39]set +x | |
| declare_from_tmpl :: COMIN_OBS=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.20211220/18/obs | |
| + JGLOBAL_MARINE_ANALYSIS_FINALIZE[19]YMD=20211220 | |
| + JGLOBAL_MARINE_ANALYSIS_FINALIZE[19]HH=18 | |
| + JGLOBAL_MARINE_ANALYSIS_FINALIZE[19]declare_from_tmpl -rx COMOUT_OCEAN_ANALYSIS:COM_OCEAN_ANALYSIS_TMPL COMOUT_ICE_ANALYSIS:COM_ICE_ANALYSIS_TMPL COMOUT_ICE_RESTART:COM_ICE_RESTART_TMPL | |
| + bash_utils.sh[39][[ NO == \N\O ]] | |
| + bash_utils.sh[39]set +x | |
| declare_from_tmpl :: COMOUT_OCEAN_ANALYSIS=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.20211220/18//analysis/ocean | |
| declare_from_tmpl :: COMOUT_ICE_ANALYSIS=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.20211220/18//analysis/ice | |
| declare_from_tmpl :: COMOUT_ICE_RESTART=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.20211220/18//model/ice/restart | |
| + JGLOBAL_MARINE_ANALYSIS_FINALIZE[24]mkdir -p /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.20211220/18//analysis/ocean | |
| + JGLOBAL_MARINE_ANALYSIS_FINALIZE[25]mkdir -p /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.20211220/18//analysis/ice | |
| + JGLOBAL_MARINE_ANALYSIS_FINALIZE[26]mkdir -p /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.20211220/18//model/ice/restart | |
| + JGLOBAL_MARINE_ANALYSIS_FINALIZE[32]EXSCRIPT=/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/scripts/exglobal_marine_analysis_finalize.py | |
| + JGLOBAL_MARINE_ANALYSIS_FINALIZE[33]/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/scripts/exglobal_marine_analysis_finalize.py | |
| + Unknown[1]uname -p | |
| [38;21m2025-06-26 09:08:47,152 - INFO - marine_analysis: BEGIN: MarineAnalysis.__init__[0m | |
| [38;5;39m2025-06-26 09:08:47,153 - DEBUG - marine_analysis: ( <pygfs.task.marine_analysis.MarineAnalysis object at 0x154fdcefa8d0>, {'SHELL': '/bin/bash', 'PDY': datetime.datetime(2021, 12, 20, 0, 0), 'DO_JEDIATMENS': False, 'PIO_TYPENAME_VALID_VALUES': ['netcdf', 'netcdf4p', 'netcdf4c', 'pnetcdf'], 'SERIAL_CXX': '/apps/spack-managed/gcc-11.3.1/intel-oneapi-compilers-2023.1.0-sb753366rvywq75zeg4ml5k5c72xgj72/compiler/2023.1.0/linux/bin/intel64/icpc', 'FHMAX_WAV': 9, 'krb5_ROOT': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/krb5-1.20.1-kshtdka', 'FIXlut': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/lut', 'fftw_ROOT': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/fftw-3.3.10-wdpojm6', 'snappy_ROOT': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/snappy-1.1.10-7bdvnza', '_ModuleTable016_': 'b24vc3BhY2stc3RhY2stMS42LjAvZW52cy91bmlmaWVkLWVudi1yb2NreTkvaW5zdGFsbC9tb2R1bGVmaWxlcy9pbnRlbC1vbmVhcGktbXBpLzIwMjEuOS4wL2ludGVsLzIwMjEuOS4wL2ZmdHcvMy4zLjEwLmx1YSIsCmZ1bGxOYW1lID0gImZmdHcvMy4zLjEwIiwKbG9hZE9yZGVyID0gMzUsCnByb3BUID0ge30sCnN0YWNrRGVwdGggPSAxLApzdGF0dXMgPSAiYWN0aXZlIiwKdXNlck5hbWUgPSAiZmZ0dy8zLjMuMTAiLAp3ViA9ICIwMDAwMDAwMDMuMDAwMDAwMDAzLjAwMDAwMDAxMC4qemZpbmFsIiwKfSwKZmlhdCA9IHsKZm4gPSAiL3dvcmsvbm9hYS9lcGljL3JvbGUtZXBpYy9zcGFjay1zdGFjay9vcmlvbi9zcGFjay1zdGFjay0xLjYuMC9lbnZzL3VuaWZpZWQtZW52LXJv', 'MAKE_NSSTBUFR': False, 'curl_ROOT': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/curl-8.4.0-4egu2ru', 'PIO_VERSION_MAJOR': 2, 'threads_per_task': 1, 'SLURM_JOB_USER': 'role-global', 'COM_ICE_GRIB_GRID_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2/${GRID}', 'COM_OCEAN_GRIB_GRID_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2/${GRID}', '_ModuleTable022_': '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', 'SLURM_TASKS_PER_NODE': 40, 'COM_ATMOS_OZNMON_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/oznmon', 'COM_ATMOS_GEMPAK_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/gempak/${GRID}', 'SLURM_JOB_UID': 10549, 'HISTCONTROL': 'ignoredups', 'SLURM_EXPORT_ENV': 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'MARINE_OBS_YAML_DIR': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/obs/config', 'DO_JEDISNOWDA': True, 'SP_LIBd': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/sp-2.5.0-56cmdxs/lib64/libsp_d.a', 'pigz_ROOT': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/pigz-2.7-ymd7yx6', 'COM_ATMOS_BUFR_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/bufr', 'COM_OCEAN_GRIB_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2', 'COM_ATMOS_TRACK_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/tracks', 'DO_VERFRAD': True, 'pgmerr': 'errfile', 'MPI_BUFS_PER_HOST': 2048, 'DO_PREP_OBS_AERO': False, 'PNG_ROOT': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/libpng-1.6.37-3rl5jsj', 'COM_ATMOS_RESTART_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model/atmos/restart', 'DO_ANLSTAT': True, 'LMOD_MPI_NAME': 'intel-oneapi-mpi', 'NMEM_ENS_GFS_OFFSET': 0, 'SMOOTH_ENKF': False, 'MARINE_JCB_GDAS_ALGO': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/jcb-gdas/algorithm/marine', 'FHMAX_GOES': 120, 'OLDPWD': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/EXPDIR/C96C48mx500_S2SW_cyc_gfs_92fcac6c', 'QUEUE': 'batch', 'COM_OBS_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/obs', 'DO_VMINMON': True, 'VERBOSE': True, 'SLURM_JOB_NODELIST': 'orion-05-57', 'CLUSTER': 'orion', 'DBNROOT': '/fakedbn', 'FHOUT_HF_WAV': 1, 'PARMgfs': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm', 'I_MPI_HYDRA_BOOTSTRAP': 'slurm', 'BASH_FUNC_ml%%': '() { eval "$($LMOD_DIR/ml_cmd "$@")"\n}', 'BASH_FUNC_which%%': '() { ( alias;\n eval ${which_declare} ) | /usr/bin/which --tty-only --read-alias --read-functions --show-tilde --show-dot $@\n}', 'BASH_FUNC_module%%': '() { if [ -z "${LMOD_SH_DBG_ON+x}" ]; then\n case "$-" in \n *v*x*)\n __lmod_sh_dbg=\'vx\'\n ;;\n *v*)\n __lmod_sh_dbg=\'v\'\n ;;\n *x*)\n __lmod_sh_dbg=\'x\'\n ;;\n esac;\n fi;\n if [ -n "${__lmod_sh_dbg:-}" ]; then\n set +$__lmod_sh_dbg;\n echo "Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod\'s output" 1>&2;\n fi;\n eval "$($LMOD_CMD $LMOD_SHELL_PRGM "$@")" && eval "$(${LMOD_SETTARG_CMD:-:} -s sh)";\n __lmod_my_status=$?;\n if [ -n "${__lmod_sh_dbg:-}" ]; then\n echo "Shell debugging restarted" 1>&2;\n set -$__lmod_sh_dbg;\n fi;\n unset __lmod_sh_dbg;\n return $__lmod_my_status\n}', 'BASH_FUNC___add_sys_prefix_to_path%%': '() { if [ -n "${_CE_CONDA}" ] && [ -n "${WINDIR+x}" ]; then\n SYSP=$(\\dirname "${CONDA_EXE}");\n else\n SYSP=$(\\dirname "${CONDA_EXE}");\n SYSP=$(\\dirname "${SYSP}");\n fi;\n if [ -n "${WINDIR+x}" ]; then\n PATH="${SYSP}/bin:${PATH}";\n PATH="${SYSP}/Scripts:${PATH}";\n PATH="${SYSP}/Library/bin:${PATH}";\n PATH="${SYSP}/Library/usr/bin:${PATH}";\n PATH="${SYSP}/Library/mingw-w64/bin:${PATH}";\n PATH="${SYSP}:${PATH}";\n else\n PATH="${SYSP}/bin:${PATH}";\n fi;\n \\export PATH\n}', 'BASH_FUNC_conda%%': '() { if [ "$#" -lt 1 ]; then\n "$CONDA_EXE" $_CE_M $_CE_CONDA;\n else\n \\local cmd="$1";\n shift;\n case "$cmd" in \n activate | deactivate)\n __conda_activate "$cmd" "$@"\n ;;\n install | update | upgrade | remove | uninstall)\n OLDPATH="${PATH}";\n __add_sys_prefix_to_path;\n "$CONDA_EXE" $_CE_M $_CE_CONDA "$cmd" "$@";\n \\local t1=$?;\n PATH="${OLDPATH}";\n if [ $t1 = 0 ]; then\n __conda_reactivate;\n else\n return $t1;\n fi\n ;;\n *)\n OLDPATH="${PATH}";\n __add_sys_prefix_to_path;\n "$CONDA_EXE" $_CE_M $_CE_CONDA "$cmd" "$@";\n \\local t1=$?;\n PATH="${OLDPATH}";\n return $t1\n ;;\n esac;\n fi\n}', 'BASH_FUNC_declare_from_tmpl%%': '() { if [[ ${DEBUG_WORKFLOW:-"NO"} == "NO" ]]; then\n set +x;\n fi;\n local opts="-g";\n local OPTIND=1;\n while getopts "rx" option; do\n opts="${opts}${option}";\n done;\n shift $((OPTIND-1));\n for input in "$@";\n do\n IFS=\':\' read -ra args <<< "${input}";\n local com_var="${args[0]}";\n local template;\n local value;\n if (( ${#args[@]} > 1 )); then\n template="${args[1]}";\n else\n template="${com_var}_TMPL";\n fi;\n if [[ ! -v "${template}" ]]; then\n echo "FATAL ERROR in declare_from_tmpl: Requested template ${template} not defined!";\n exit 2;\n fi;\n value=$(echo "${!template}" | envsubst);\n declare ${opts} "${com_var}"="${value}";\n echo "declare_from_tmpl :: ${com_var}=${value}";\n done;\n set_trace\n}', 'BASH_FUNC_err_exit%%': ['() { set +eux;\n msg1=${*:-Job ${jobid} failed};\n if [[ -n "${pgm}" ]]; then\n msg1+="', 'ERROR IN ${pgm}";\n fi;\n if [[ -n "${err}" ]]; then\n msg1+=" RETURN CODE ${err}";\n fi;\n msg2="\n -------------------------------------------------------------\n -- FATAL ERROR: ${msg1}\n -- ABNORMAL EXIT at $(date) on ${HOSTNAME}\n -------------------------------------------------------------\n ";\n echo "${msg2}" 1>&2;\n module list;\n echo "" 1>&2;\n echo "${msg1}" 1>&2;\n if [[ -n "${DATA}" ]]; then\n echo "${DATA}" 1>&2;\n ls -ltr "${DATA}" 1>&2;\n else\n echo "WARNING: DATA variable not defined" 1>&2;\n fi;\n if [[ -n "${pgmout}" ]]; then\n if [[ -s errfile ]]; then\n echo "----- contents of errfile -----" >> "${pgmout}";\n cat errfile >> "${pgmout}";\n fi;\n cat "${pgmout}" 1>&2;\n else\n if [[ -s errfile ]]; then\n cat errfile 1>&2;\n fi;\n fi;\n if [[ "${SENDECF}" = "YES" ]]; then\n timeout 30 ecflow_client --msg "${ECF_NAME}: ${msg1}";\n timeout 30 ssh "${ECF_HOST}" "echo \\"${msg}2\\" >> ${ECF_JOBOUT:?}";\n fi;\n if [[ "${SENDECF}" = "YES" ]]; then\n ecflow_client --kill="${ECF_NAME:?}";\n fi;\n if [[ -n "${PBS_JOBID}" ]]; then\n qdel "${PBS_JOBID}";\n else\n if [[ -n "${SLURM_JOB_ID}" ]]; then\n scancel "${SLURM_JOB_ID}";\n fi;\n fi\n}'], 'BASH_FUNC_wait_for_file%%': '() { set +x;\n local file_name=${1:?"wait_for_file() requires a file name"};\n local sleep_interval=${2:-60};\n local max_tries=${3:-100};\n for ((iter=0; iter<max_tries; iter++ ))\n do\n if [[ -r ${file_name} ]]; then\n set_trace;\n return 0;\n fi;\n sleep "${sleep_interval}";\n done;\n set_trace;\n return 1\n}', 'BASH_FUNC___conda_reactivate%%': '() { \\local ask_conda;\n OLDPATH="${PATH}";\n __add_sys_prefix_to_path;\n ask_conda="$(PS1="${PS1:-"dummy"}" "$CONDA_EXE" $_CE_M $_CE_CONDA shell.posix reactivate)" || \\return $?;\n PATH="${OLDPATH}";\n \\eval "$ask_conda";\n __conda_hashr\n}', 'BASH_FUNC_set_trace%%': '() { if [[ ${TRACE:-"YES"} == "YES" ]]; then\n set -x;\n fi\n}', 'BASH_FUNC___conda_hashr%%': '() { if [ -n "${ZSH_VERSION:+x}" ]; then\n \\rehash;\n else\n if [ -n "${POSH_VERSION:+x}" ]; then\n :;\n else\n \\hash -r;\n fi;\n fi\n}', 'BASH_FUNC_postamble%%': '() { set +x;\n script="${1}";\n start_time="${2}";\n rc="${3}";\n if [[ -v \'POSTAMBLE_CMD\' ]]; then\n ${POSTAMBLE_CMD};\n fi;\n end_time=$(date +%s);\n end_time_human=$(date -d@"${end_time}" -u +%H:%M:%S);\n elapsed_sec=$((end_time - start_time));\n elapsed=$(date -d@"${elapsed_sec}" -u +%H:%M:%S);\n echo "End ${script} at ${end_time_human} with error code ${rc:-0} (time elapsed: ${elapsed})";\n exit "${rc}"\n}', 'BASH_FUNC_set_strict%%': '() { if [[ ${STRICT:-"YES"} == "YES" ]]; then\n set -eu;\n fi\n}', 'BASH_FUNC___conda_activate%%': '() { if [ -n "${CONDA_PS1_BACKUP:+x}" ]; then\n PS1="$CONDA_PS1_BACKUP";\n \\unset CONDA_PS1_BACKUP;\n fi;\n \\local cmd="$1";\n shift;\n \\local ask_conda;\n OLDPATH="${PATH}";\n __add_sys_prefix_to_path;\n ask_conda="$(PS1="${PS1:-"dummy"}" "$CONDA_EXE" $_CE_M $_CE_CONDA shell.posix "$cmd" "$@")" || \\return $?;\n PATH="${OLDPATH}";\n \\eval "$ask_conda";\n __conda_hashr\n}', '_': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/scripts/exglobal_marine_analysis_finalize.py'} )[0m | |
| [38;5;39m2025-06-26 09:08:47,159 - DEBUG - task : current cycle: 2021-12-20 18:00:00[0m | |
| [38;5;39m2025-06-26 09:08:47,159 - DEBUG - task : previous cycle: 2021-12-20 12:00:00[0m | |
| [38;21m2025-06-26 09:08:47,159 - INFO - marine_da_utils: BEGIN: pygfs.utils.marine_da_utils.get_mom6_levels[0m | |
| [38;5;39m2025-06-26 09:08:47,159 - DEBUG - marine_da_utils: ( '500' )[0m | |
| [38;21m2025-06-26 09:08:47,159 - INFO - marine_da_utils: END: pygfs.utils.marine_da_utils.get_mom6_levels[0m | |
| [38;5;39m2025-06-26 09:08:47,160 - DEBUG - marine_da_utils: returning: 25[0m | |
| [38;21m2025-06-26 09:08:47,160 - INFO - marine_da_utils: BEGIN: pygfs.utils.marine_da_utils.gen_bkg_list[0m | |
| [38;5;39m2025-06-26 09:08:47,160 - DEBUG - marine_da_utils: ( bkg_path='./bkg', window_begin=datetime.datetime(2021, 12, 20, 15, 0) )[0m | |
| [38;21m2025-06-26 09:08:47,160 - INFO - marine_da_utils: ****************** bkg: ./bkg/ocean.bkg.f006.nc[0m | |
| [38;21m2025-06-26 09:08:47,160 - INFO - marine_da_utils: ****************** bkg: ./bkg/ocean.bkg.f009.nc[0m | |
| [38;21m2025-06-26 09:08:47,160 - INFO - marine_da_utils: END: pygfs.utils.marine_da_utils.gen_bkg_list[0m | |
| [38;5;39m2025-06-26 09:08:47,160 - DEBUG - marine_da_utils: returning: [{'date': '2021-12-20T18:00:00Z', 'basename': './bkg/', 'ocn_filename': 'ocean.bkg.f006.nc', 'ice_filename': 'ice.bkg.f006.nc', 'read_from_file': 1}, {'date': '2021-12-20T21:00:00Z', 'basename': './bkg/', 'ocn_filename': 'ocean.bkg.f009.nc', 'ice_filename': 'ice.bkg.f009.nc', 'read_from_file': 1}][0m | |
| [38;21m2025-06-26 09:08:47,161 - INFO - jedi : BEGIN: pygfs.jedi.jedi.get_jedi_dict[0m | |
| [38;5;39m2025-06-26 09:08:47,161 - DEBUG - jedi : ( '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca_analysis_jedi_config.yaml.j2', {'SHELL': '/bin/bash', 'PDY': datetime.datetime(2021, 12, 20, 0, 0), 'DO_JEDIATMENS': False, 'PIO_TYPENAME_VALID_VALUES': ['netcdf', 'netcdf4p', 'netcdf4c', 'pnetcdf'], 'SERIAL_CXX': '/apps/spack-managed/gcc-11.3.1/intel-oneapi-compilers-2023.1.0-sb753366rvywq75zeg4ml5k5c72xgj72/compiler/2023.1.0/linux/bin/intel64/icpc', 'FHMAX_WAV': 9, 'krb5_ROOT': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/krb5-1.20.1-kshtdka', 'FIXlut': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/fix/lut', 'fftw_ROOT': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/fftw-3.3.10-wdpojm6', 'snappy_ROOT': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/snappy-1.1.10-7bdvnza', '_ModuleTable016_': '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', 'MAKE_NSSTBUFR': False, 'curl_ROOT': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/curl-8.4.0-4egu2ru', 'PIO_VERSION_MAJOR': 2, 'threads_per_task': 1, 'SLURM_JOB_USER': 'role-global', 'COM_ICE_GRIB_GRID_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ice/grib2/${GRID}', 'COM_OCEAN_GRIB_GRID_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2/${GRID}', '_ModuleTable022_': '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', 'SLURM_TASKS_PER_NODE': 40, 'COM_ATMOS_OZNMON_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/oznmon', 'COM_ATMOS_GEMPAK_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/gempak/${GRID}', 'SLURM_JOB_UID': 10549, 'HISTCONTROL': 'ignoredups', 'SLURM_EXPORT_ENV': 'NONE', 'COM_OCEAN_NETCDF_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/netcdf', 'l4densvar': True, 'FHOUT_HF_GFS': 1, 'I_MPI_EXTRA_FILESYSTEM': 'ON', 'SLURM_TASK_PID': 52451, 'CONDA_EXE': '/work2/noaa/da/python/opt/core/miniconda3/4.6.14/bin/conda', '_CE_M': '', 'MPI_BUFS_PER_PROC': 2048, 'IAU_DELTHRS_ENKF': 6, 'COM_WAVE_WMO_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/wave/wmo', '_ModuleTable027_': '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', 'NMEM_ENS': 2, '__LMOD_REF_COUNT_CLASSPATH': '/apps/spack-managed/oneapi-2023.1.0/intel-oneapi-mpi-2021.9.0-a66eaipzsnyrdgaqzxmqmqz64qzvhkse/mpi/2021.9.0/lib/mpi.jar:1', 'MARINE_DET_STAGE_BKG_YAML_TMPL': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/soca_det_bkg_stage.yaml.j2', 'err': 0, '_ModuleTable050_': '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', '_ModuleTable032_': 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'MARINE_OBS_YAML_DIR': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/obs/config', 'DO_JEDISNOWDA': True, 'SP_LIBd': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/sp-2.5.0-56cmdxs/lib64/libsp_d.a', 'pigz_ROOT': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/pigz-2.7-ymd7yx6', 'COM_ATMOS_BUFR_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/bufr', 'COM_OCEAN_GRIB_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/ocean/grib2', 'COM_ATMOS_TRACK_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/products/atmos/cyclone/tracks', 'DO_VERFRAD': True, 'pgmerr': 'errfile', 'MPI_BUFS_PER_HOST': 2048, 'DO_PREP_OBS_AERO': False, 'PNG_ROOT': '/work/noaa/epic/role-epic/spack-stack/orion/spack-stack-1.6.0/envs/unified-env-rocky9/install/intel/2021.9.0/libpng-1.6.37-3rl5jsj', 'COM_ATMOS_RESTART_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/${MEMDIR}/model/atmos/restart', 'DO_ANLSTAT': True, 'LMOD_MPI_NAME': 'intel-oneapi-mpi', 'NMEM_ENS_GFS_OFFSET': 0, 'SMOOTH_ENKF': False, 'MARINE_JCB_GDAS_ALGO': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/jcb-gdas/algorithm/marine', 'FHMAX_GOES': 120, 'OLDPWD': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/EXPDIR/C96C48mx500_S2SW_cyc_gfs_92fcac6c', 'QUEUE': 'batch', 'COM_OBS_TMPL': '${ROTDIR}/${RUN}.${YMD}/${HH}/obs', 'DO_VMINMON': True, 'VERBOSE': True, 'SLURM_JOB_NODELIST': 'orion-05-57', 'CLUSTER': 'orion', 'DBNROOT': '/fakedbn', 'FHOUT_HF_WAV': 1, 'PARMgfs': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm', 'I_MPI_HYDRA_BOOTSTRAP': 'slurm', 'BASH_FUNC_ml%%': '() { eval "$($LMOD_DIR/ml_cmd "$@")"\n}', 'BASH_FUNC_which%%': '() { ( alias;\n eval ${which_declare} ) | /usr/bin/which --tty-only --read-alias --read-functions --show-tilde --show-dot $@\n}', 'BASH_FUNC_module%%': '() { if [ -z "${LMOD_SH_DBG_ON+x}" ]; then\n case "$-" in \n *v*x*)\n __lmod_sh_dbg=\'vx\'\n ;;\n *v*)\n __lmod_sh_dbg=\'v\'\n ;;\n *x*)\n __lmod_sh_dbg=\'x\'\n ;;\n esac;\n fi;\n if [ -n "${__lmod_sh_dbg:-}" ]; then\n set +$__lmod_sh_dbg;\n echo "Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod\'s output" 1>&2;\n fi;\n eval "$($LMOD_CMD $LMOD_SHELL_PRGM "$@")" && eval "$(${LMOD_SETTARG_CMD:-:} -s sh)";\n __lmod_my_status=$?;\n if [ -n "${__lmod_sh_dbg:-}" ]; then\n echo "Shell debugging restarted" 1>&2;\n set -$__lmod_sh_dbg;\n fi;\n unset __lmod_sh_dbg;\n return $__lmod_my_status\n}', 'BASH_FUNC___add_sys_prefix_to_path%%': '() { if [ -n "${_CE_CONDA}" ] && [ -n "${WINDIR+x}" ]; then\n SYSP=$(\\dirname "${CONDA_EXE}");\n else\n SYSP=$(\\dirname "${CONDA_EXE}");\n SYSP=$(\\dirname "${SYSP}");\n fi;\n if [ -n "${WINDIR+x}" ]; then\n PATH="${SYSP}/bin:${PATH}";\n PATH="${SYSP}/Scripts:${PATH}";\n PATH="${SYSP}/Library/bin:${PATH}";\n PATH="${SYSP}/Library/usr/bin:${PATH}";\n PATH="${SYSP}/Library/mingw-w64/bin:${PATH}";\n PATH="${SYSP}:${PATH}";\n else\n PATH="${SYSP}/bin:${PATH}";\n fi;\n \\export PATH\n}', 'BASH_FUNC_conda%%': '() { if [ "$#" -lt 1 ]; then\n "$CONDA_EXE" $_CE_M $_CE_CONDA;\n else\n \\local cmd="$1";\n shift;\n case "$cmd" in \n activate | deactivate)\n __conda_activate "$cmd" "$@"\n ;;\n install | update | upgrade | remove | uninstall)\n OLDPATH="${PATH}";\n __add_sys_prefix_to_path;\n "$CONDA_EXE" $_CE_M $_CE_CONDA "$cmd" "$@";\n \\local t1=$?;\n PATH="${OLDPATH}";\n if [ $t1 = 0 ]; then\n __conda_reactivate;\n else\n return $t1;\n fi\n ;;\n *)\n OLDPATH="${PATH}";\n __add_sys_prefix_to_path;\n "$CONDA_EXE" $_CE_M $_CE_CONDA "$cmd" "$@";\n \\local t1=$?;\n PATH="${OLDPATH}";\n return $t1\n ;;\n esac;\n fi\n}', 'BASH_FUNC_declare_from_tmpl%%': '() { if [[ ${DEBUG_WORKFLOW:-"NO"} == "NO" ]]; then\n set +x;\n fi;\n local opts="-g";\n local OPTIND=1;\n while getopts "rx" option; do\n opts="${opts}${option}";\n done;\n shift $((OPTIND-1));\n for input in "$@";\n do\n IFS=\':\' read -ra args <<< "${input}";\n local com_var="${args[0]}";\n local template;\n local value;\n if (( ${#args[@]} > 1 )); then\n template="${args[1]}";\n else\n template="${com_var}_TMPL";\n fi;\n if [[ ! -v "${template}" ]]; then\n echo "FATAL ERROR in declare_from_tmpl: Requested template ${template} not defined!";\n exit 2;\n fi;\n value=$(echo "${!template}" | envsubst);\n declare ${opts} "${com_var}"="${value}";\n echo "declare_from_tmpl :: ${com_var}=${value}";\n done;\n set_trace\n}', 'BASH_FUNC_err_exit%%': ['() { set +eux;\n msg1=${*:-Job ${jobid} failed};\n if [[ -n "${pgm}" ]]; then\n msg1+="', 'ERROR IN ${pgm}";\n fi;\n if [[ -n "${err}" ]]; then\n msg1+=" RETURN CODE ${err}";\n fi;\n msg2="\n -------------------------------------------------------------\n -- FATAL ERROR: ${msg1}\n -- ABNORMAL EXIT at $(date) on ${HOSTNAME}\n -------------------------------------------------------------\n ";\n echo "${msg2}" 1>&2;\n module list;\n echo "" 1>&2;\n echo "${msg1}" 1>&2;\n if [[ -n "${DATA}" ]]; then\n echo "${DATA}" 1>&2;\n ls -ltr "${DATA}" 1>&2;\n else\n echo "WARNING: DATA variable not defined" 1>&2;\n fi;\n if [[ -n "${pgmout}" ]]; then\n if [[ -s errfile ]]; then\n echo "----- contents of errfile -----" >> "${pgmout}";\n cat errfile >> "${pgmout}";\n fi;\n cat "${pgmout}" 1>&2;\n else\n if [[ -s errfile ]]; then\n cat errfile 1>&2;\n fi;\n fi;\n if [[ "${SENDECF}" = "YES" ]]; then\n timeout 30 ecflow_client --msg "${ECF_NAME}: ${msg1}";\n timeout 30 ssh "${ECF_HOST}" "echo \\"${msg}2\\" >> ${ECF_JOBOUT:?}";\n fi;\n if [[ "${SENDECF}" = "YES" ]]; then\n ecflow_client --kill="${ECF_NAME:?}";\n fi;\n if [[ -n "${PBS_JOBID}" ]]; then\n qdel "${PBS_JOBID}";\n else\n if [[ -n "${SLURM_JOB_ID}" ]]; then\n scancel "${SLURM_JOB_ID}";\n fi;\n fi\n}'], 'BASH_FUNC_wait_for_file%%': '() { set +x;\n local file_name=${1:?"wait_for_file() requires a file name"};\n local sleep_interval=${2:-60};\n local max_tries=${3:-100};\n for ((iter=0; iter<max_tries; iter++ ))\n do\n if [[ -r ${file_name} ]]; then\n set_trace;\n return 0;\n fi;\n sleep "${sleep_interval}";\n done;\n set_trace;\n return 1\n}', 'BASH_FUNC___conda_reactivate%%': '() { \\local ask_conda;\n OLDPATH="${PATH}";\n __add_sys_prefix_to_path;\n ask_conda="$(PS1="${PS1:-"dummy"}" "$CONDA_EXE" $_CE_M $_CE_CONDA shell.posix reactivate)" || \\return $?;\n PATH="${OLDPATH}";\n \\eval "$ask_conda";\n __conda_hashr\n}', 'BASH_FUNC_set_trace%%': '() { if [[ ${TRACE:-"YES"} == "YES" ]]; then\n set -x;\n fi\n}', 'BASH_FUNC___conda_hashr%%': '() { if [ -n "${ZSH_VERSION:+x}" ]; then\n \\rehash;\n else\n if [ -n "${POSH_VERSION:+x}" ]; then\n :;\n else\n \\hash -r;\n fi;\n fi\n}', 'BASH_FUNC_postamble%%': '() { set +x;\n script="${1}";\n start_time="${2}";\n rc="${3}";\n if [[ -v \'POSTAMBLE_CMD\' ]]; then\n ${POSTAMBLE_CMD};\n fi;\n end_time=$(date +%s);\n end_time_human=$(date -d@"${end_time}" -u +%H:%M:%S);\n elapsed_sec=$((end_time - start_time));\n elapsed=$(date -d@"${elapsed_sec}" -u +%H:%M:%S);\n echo "End ${script} at ${end_time_human} with error code ${rc:-0} (time elapsed: ${elapsed})";\n exit "${rc}"\n}', 'BASH_FUNC_set_strict%%': '() { if [[ ${STRICT:-"YES"} == "YES" ]]; then\n set -eu;\n fi\n}', 'BASH_FUNC___conda_activate%%': '() { if [ -n "${CONDA_PS1_BACKUP:+x}" ]; then\n PS1="$CONDA_PS1_BACKUP";\n \\unset CONDA_PS1_BACKUP;\n fi;\n \\local cmd="$1";\n shift;\n \\local ask_conda;\n OLDPATH="${PATH}";\n __add_sys_prefix_to_path;\n ask_conda="$(PS1="${PS1:-"dummy"}" "$CONDA_EXE" $_CE_M $_CE_CONDA shell.posix "$cmd" "$@")" || \\return $?;\n PATH="${OLDPATH}";\n \\eval "$ask_conda";\n __conda_hashr\n}', '_': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/scripts/exglobal_marine_analysis_finalize.py', 'current_cycle': datetime.datetime(2021, 12, 20, 18, 0), 'previous_cycle': datetime.datetime(2021, 12, 20, 12, 0), 'PARMsoca': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca', 'MARINE_WINDOW_BEGIN': datetime.datetime(2021, 12, 20, 15, 0), 'MARINE_WINDOW_END': datetime.datetime(2021, 12, 20, 21, 0), 'MARINE_WINDOW_MIDDLE': datetime.datetime(2021, 12, 20, 18, 0), 'MARINE_WINDOW_LENGTH': 'PT6H', 'MARINE_WINDOW_BEGIN_ISO': '2021-12-20T15:00:00Z', 'MARINE_WINDOW_MIDDLE_ISO': '2021-12-20T18:00:00Z', 'ENSPERT_RELPATH': '../ensdata', 'CALC_SCALE_EXEC': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/ush/soca/calc_scales.py', 'OPREFIX': 'gdas.t18z.', 'APREFIX': 'gdas.t18z.', 'berror_model': 'marine_background_error_hybrid_diffusion_diffusion', 'MOM6_LEVS': 25, 'app_path_observations': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/jcb-gdas/observations/marine', 'marine_pseudo_model_states': [{'date': '2021-12-20T18:00:00Z', 'basename': './bkg/', 'ocn_filename': 'ocean.bkg.f006.nc', 'ice_filename': 'ice.bkg.f006.nc', 'read_from_file': 1}, {'date': '2021-12-20T21:00:00Z', 'basename': './bkg/', 'ocn_filename': 'ocean.bkg.f009.nc', 'ice_filename': 'ice.bkg.f009.nc', 'read_from_file': 1}]}, ['var', 'soca_incpostproc', 'soca_diag_stats'] )[0m | |
| [38;21m2025-06-26 09:08:47,177 - INFO - jedi : BEGIN: Jedi.__init__[0m | |
| [38;5;39m2025-06-26 09:08:47,178 - DEBUG - jedi : ( <pygfs.jedi.jedi.Jedi object at 0x154fe5559290>, {'rundir': '/work2/noaa/global/role-global/stmp/ORION/RUNDIRS/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.2021122018/gdasmarineanalysis.2021122018/marinevariational', 'exe_src': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/exec/gdas.x', 'mpi_cmd': '{{ APRUN_MARINEANLVAR }}', 'jedi_args': ['soca', 'variational'], 'jcb_base_yaml': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/jcb-base.yaml.j2', 'jcb_algo_yaml': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/jcb-prototype_3dfgat.yaml.j2', 'yaml_name': 'var', 'jcb_algo': None} )[0m | |
| [38;21m2025-06-26 09:08:47,178 - INFO - jedi : END: Jedi.__init__[0m | |
| [38;5;39m2025-06-26 09:08:47,178 - DEBUG - jedi : returning: None[0m | |
| [38;21m2025-06-26 09:08:47,178 - INFO - jedi : BEGIN: Jedi.__init__[0m | |
| [38;5;39m2025-06-26 09:08:47,178 - DEBUG - jedi : ( <pygfs.jedi.jedi.Jedi object at 0x154fdac9dad0>, {'rundir': '/work2/noaa/global/role-global/stmp/ORION/RUNDIRS/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.2021122018/gdasmarineanalysis.2021122018/marinevariational', 'exe_src': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/exec/gdas_soca_incr_handler.x', 'mpi_cmd': '{{ APRUN_MARINEANLCHKPT }}', 'jcb_base_yaml': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/jcb-base.yaml.j2', 'jcb_algo': 'soca_incpostproc', 'yaml_name': 'soca_incpostproc', 'jedi_args': None, 'jcb_algo_yaml': None} )[0m | |
| [38;21m2025-06-26 09:08:47,178 - INFO - jedi : END: Jedi.__init__[0m | |
| [38;5;39m2025-06-26 09:08:47,178 - DEBUG - jedi : returning: None[0m | |
| [38;21m2025-06-26 09:08:47,178 - INFO - jedi : BEGIN: Jedi.__init__[0m | |
| [38;5;39m2025-06-26 09:08:47,178 - DEBUG - jedi : ( <pygfs.jedi.jedi.Jedi object at 0x15500fe9e050>, {'rundir': '/work2/noaa/global/role-global/stmp/ORION/RUNDIRS/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.2021122018/gdasmarineanalysis.2021122018/marinevariational', 'exe_src': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/exec/gdas_soca_obsstats.x', 'mpi_cmd': '{{ APRUN_MARINEANLOBSSTATS }}', 'jcb_base_yaml': '/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/parm/gdas/soca/jcb-base.yaml.j2', 'jcb_algo': 'soca_diag_stats', 'yaml_name': 'soca_diag_stats', 'jedi_args': None, 'jcb_algo_yaml': None} )[0m | |
| [38;21m2025-06-26 09:08:47,178 - INFO - jedi : END: Jedi.__init__[0m | |
| [38;5;39m2025-06-26 09:08:47,179 - DEBUG - jedi : returning: None[0m | |
| [38;21m2025-06-26 09:08:47,179 - INFO - jedi : END: pygfs.jedi.jedi.get_jedi_dict[0m | |
| [38;5;39m2025-06-26 09:08:47,179 - DEBUG - jedi : returning: {'var': <pygfs.jedi.jedi.Jedi object at 0x154fe5559290>, 'soca_incpostproc': <pygfs.jedi.jedi.Jedi object at 0x154fdac9dad0>, 'soca_diag_stats': <pygfs.jedi.jedi.Jedi object at 0x15500fe9e050>}[0m | |
| [38;21m2025-06-26 09:08:47,179 - INFO - marine_analysis: END: MarineAnalysis.__init__[0m | |
| [38;5;39m2025-06-26 09:08:47,179 - DEBUG - marine_analysis: returning: None[0m | |
| [38;21m2025-06-26 09:08:47,179 - INFO - marine_analysis: BEGIN: pygfs.task.marine_analysis.finalize[0m | |
| [38;5;39m2025-06-26 09:08:47,179 - DEBUG - marine_analysis: ( <pygfs.task.marine_analysis.MarineAnalysis object at 0x154fdcefa8d0> )[0m | |
| [38;21m2025-06-26 09:08:47,179 - INFO - marine_analysis: Copy files from /work2/noaa/global/role-global/stmp/ORION/RUNDIRS/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.2021122018/gdasmarineanalysis.2021122018/marinevariational to /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.20211220/18//analysis/ocean[0m | |
| [38;21m2025-06-26 09:08:47,217 - INFO - file_utils : Created /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.20211220/18//analysis/ocean/diags[0m | |
| [38;21m2025-06-26 09:08:47,217 - INFO - file_utils : Created /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.20211220/18//analysis/ocean/bump[0m | |
| [38;21m2025-06-26 09:08:47,217 - INFO - file_utils : Created /work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/RUNTESTS/COMROOT/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.20211220/18//analysis/ocean/yaml[0m | |
| [38;5;196m2025-06-26 09:08:47,217 - ERROR - file_utils : Source file '/work2/noaa/global/role-global/stmp/ORION/RUNDIRS/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.2021122018/gdasmarineanalysis.2021122018/marinevariational/ocn.inc.nc' does not exist and is required, ABORT | |
| File "/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/ush/python/wxflow/file_utils.py", line 69, in copy_req | |
| FileHandler._copy_files(filelist, required=True) | |
| File "/work2/noaa/global/role-global/GFS_CI_CD/ORION/CI/3498__2/global-workflow/ush/python/wxflow/file_utils.py", line 105, in _copy_files | |
| raise FileNotFoundError(f"Source file '{src}' does not exist") | |
| FileNotFoundError: Source file '/work2/noaa/global/role-global/stmp/ORION/RUNDIRS/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.2021122018/gdasmarineanalysis.2021122018/marinevariational/ocn.inc.nc' does not exist | |
| + JGLOBAL_MARINE_ANALYSIS_FINALIZE[34]export err=1 | |
| + JGLOBAL_MARINE_ANALYSIS_FINALIZE[34]err=1 | |
| + JGLOBAL_MARINE_ANALYSIS_FINALIZE[35][[ 1 -ne 0 ]] | |
| + JGLOBAL_MARINE_ANALYSIS_FINALIZE[36]err_exit | |
| + preamble.sh[109]set +eux | |
| ------------------------------------------------------------- | |
| -- FATAL ERROR: Job marineanlfinal.52456 failed RETURN CODE 1 | |
| -- ABNORMAL EXIT at Thu Jun 26 09:08:47 CDT 2025 on orion-05-57 | |
| ------------------------------------------------------------- | |
| Currently Loaded Modules: | |
| 1) intel-oneapi-compilers/2023.1.0 35) fftw/3.3.10 | |
| 2) stack-intel/2021.9.0 36) fckit/0.11.0 | |
| 3) intel-oneapi-mpi/2021.9.0 37) fiat/1.2.0 | |
| 4) stack-intel-oneapi-mpi/2021.9.0 38) ectrans/1.2.0 | |
| 5) cmake/3.23.1 39) fms/2023.04 | |
| 6) nghttp2/1.57.0 40) esmf/8.6.0 | |
| 7) curl/8.4.0 41) qhull/2020.2 | |
| 8) zlib/1.2.13 42) atlas/0.35.1 | |
| 9) git/2.31.1 43) sp/2.5.0 | |
| 10) hdf5/1.14.0 44) gsl-lite/0.37.0 | |
| 11) parallel-netcdf/1.12.2 45) libjpeg/2.1.0 | |
| 12) snappy/1.1.10 46) krb5/1.20.1 | |
| 13) zstd/1.5.2 47) libtirpc/1.3.3 | |
| 14) c-blosc/1.21.5 48) hdf/4.2.15 | |
| 15) netcdf-c/4.9.2 49) jedi-cmake/1.4.0 | |
| 16) nccmp/1.9.0.1 50) libpng/1.6.37 | |
| 17) netcdf-fortran/4.6.1 51) libxt/1.1.5 | |
| 18) antlr/2.7.7 52) libxmu/1.1.4 | |
| 19) gsl/2.7.1 53) libxpm/3.5.12 | |
| 20) nco/5.0.6 54) libxaw/1.0.13 | |
| 21) parallelio/2.5.10 55) udunits/2.2.28 | |
| 22) wget/1.21.1 56) ncview/2.1.9 | |
| 23) pigz/2.7 57) netcdf-cxx4/4.3.1 | |
| 24) tar/1.34 58) py-pybind11/2.11.0 | |
| 25) gettext/0.21.1 59) contrib/0.1 | |
| 26) boost/1.83.0 60) noaatools/3.1 | |
| 27) bufr/12.0.1 61) rocoto/1.3.7 | |
| 28) git-lfs/3.1.2 62) bacio/2.4.1 | |
| 29) ecbuild/3.7.2 63) w3emc/2.10.0 | |
| 30) openjpeg/2.3.1 64) prod_util/2.1.1 | |
| 31) eccodes/2.32.0 65) hpc/1.2.0 | |
| 32) eigen/3.4.0 66) miniconda3/4.6.14 | |
| 33) openblas/0.3.24 67) gdasapp/1.0.0 | |
| 34) eckit/1.24.5 68) GDAS/orion.intel | |
| Job marineanlfinal.52456 failed RETURN CODE 1 | |
| /work2/noaa/global/role-global/stmp/ORION/RUNDIRS/C96C48mx500_S2SW_cyc_gfs_92fcac6c/gdas.2021122018/gdasmarineanalysis.2021122018/marinevariational | |
| total 0 | |
| -rw-r----- 1 role-global noaa-hpc 0 Jun 26 09:08 ncepdate | |
| cat: OUTPUT.53165: No such file or directory | |
| slurmstepd: error: *** JOB 20520693 ON orion-05-57 CANCELLED AT 2025-06-26T09:08:47 *** |
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