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November 28, 2022 13:39
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trnascan (brewsci/bio/trnascan) on macOS 12.5 - Homebrew build logs
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| Homebrew build logs for brewsci/bio/trnascan on macOS 12.5 | |
| Build date: 2022-11-28 14:38:20 |
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| HOMEBREW_VERSION: 3.6.12-20-g9c88c39 | |
| ORIGIN: https://github.com/Homebrew/brew | |
| HEAD: 9c88c39baead6bbc40b12ab1eae9b63bcb5a8042 | |
| Last commit: 4 days ago | |
| Core tap ORIGIN: https://github.com/Homebrew/homebrew-core | |
| Core tap HEAD: 3dfe90dfad30c81007345ffaa9a03c30723f86b3 | |
| Core tap last commit: 36 minutes ago | |
| Core tap branch: master | |
| HOMEBREW_PREFIX: /usr/local | |
| HOMEBREW_CASK_OPTS: [] | |
| HOMEBREW_DISPLAY: /private/tmp/com.apple.launchd.XXwrGVj0o5/org.xquartz:0 | |
| HOMEBREW_EDITOR: vi | |
| HOMEBREW_MAKE_JOBS: 8 | |
| Homebrew Ruby: 2.6.8 => /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/bin/ruby | |
| CPU: octa-core 64-bit icelake | |
| Clang: 13.1.6 build 1316 | |
| Git: 2.32.1 => /Library/Developer/CommandLineTools/usr/bin/git | |
| Curl: 7.79.1 => /usr/bin/curl | |
| macOS: 12.5.1-x86_64 | |
| CLT: 13.4.0.0.1.1651278267 | |
| Xcode: N/A |
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| Please note that these warnings are just used to help the Homebrew maintainers | |
| with debugging if you file an issue. If everything you use Homebrew for is | |
| working fine: please don't worry or file an issue; just ignore this. Thanks! | |
| Warning: Some installed formulae are deprecated or disabled. | |
| You should find replacements for the following formulae: | |
| v8@3.15 | |
| Warning: Unbrewed dylibs were found in /usr/local/lib. | |
| If you didn't put them there on purpose they could cause problems when | |
| building Homebrew formulae, and may need to be deleted. | |
| Unexpected dylibs: | |
| /usr/local/lib/libwkhtmltox.0.12.6.dylib | |
| Warning: Unbrewed header files were found in /usr/local/include. | |
| If you didn't put them there on purpose they could cause problems when | |
| building Homebrew formulae, and may need to be deleted. | |
| Unexpected header files: | |
| /usr/local/include/wkhtmltox/image.h | |
| /usr/local/include/wkhtmltox/pdf.h | |
| Warning: /usr/bin occurs before /usr/local/bin in your PATH. | |
| This means that system-provided programs will be used instead of those | |
| provided by Homebrew. Consider setting your PATH so that | |
| /usr/local/bin occurs before /usr/bin. Here is a one-liner: | |
| echo 'export PATH="/usr/local/bin:$PATH"' >> ~/.profile | |
| The following tools exist at both paths: | |
| pp | |
| rake | |
| Warning: Homebrew's "bin" was not found in your PATH. | |
| Consider setting your PATH for example like so: | |
| echo 'export PATH="/usr/local/bin:$PATH"' >> ~/.profile |
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| brewsci/bio/trnascan |
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| Formula: trnascan | |
| Tap: brewsci/bio | |
| Path: /usr/local/Homebrew/Library/Taps/brewsci/homebrew-bio/Formula/trnascan.rb |
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| 2022-11-28 13:37:55 +0000 | |
| ./configure | |
| --disable-debug | |
| --disable-dependency-tracking | |
| --disable-silent-rules | |
| --prefix=/usr/local/Cellar/trnascan/2.0.11 | |
| configure: WARNING: unrecognized options: --disable-debug | |
| checking for gcc... clang | |
| checking whether the C compiler works... yes | |
| checking for C compiler default output file name... a.out | |
| checking for suffix of executables... | |
| checking whether we are cross compiling... no | |
| checking for suffix of object files... o | |
| checking whether we are using the GNU C compiler... yes | |
| checking whether clang accepts -g... yes | |
| checking for clang option to accept ISO C89... none needed | |
| checking for a BSD-compatible install... /usr/bin/install -c | |
| checking for perl... /usr/bin/perl | |
| checking for Perl version 5.0.0 or later... yes | |
| checking how to run the C preprocessor... clang -E | |
| checking for grep that handles long lines and -e... /usr/bin/grep | |
| checking for egrep... /usr/bin/grep -E | |
| checking for ANSI C header files... yes | |
| checking for sys/types.h... yes | |
| checking for sys/stat.h... yes | |
| checking for stdlib.h... yes | |
| checking for string.h... yes | |
| checking for memory.h... yes | |
| checking for strings.h... yes | |
| checking for inttypes.h... yes | |
| checking for stdint.h... yes | |
| checking for unistd.h... yes | |
| checking for size_t... yes | |
| checking for working alloca.h... yes | |
| checking for alloca... yes | |
| checking limits.h usability... yes | |
| checking limits.h presence... yes | |
| checking for limits.h... yes | |
| checking for memory.h... (cached) yes | |
| checking stddef.h usability... yes | |
| checking stddef.h presence... yes | |
| checking for stddef.h... yes | |
| checking for stdlib.h... (cached) yes | |
| checking for string.h... (cached) yes | |
| checking for unistd.h... (cached) yes | |
| checking for stdbool.h that conforms to C99... yes | |
| checking for _Bool... yes | |
| checking for size_t... (cached) yes | |
| checking for stdlib.h... (cached) yes | |
| checking for GNU libc compatible malloc... yes | |
| checking for stdlib.h... (cached) yes | |
| checking for GNU libc compatible realloc... yes | |
| checking for bzero... yes | |
| checking for memset... yes | |
| checking for re_comp... no | |
| checking for regcomp... yes | |
| checking for sqrt... yes | |
| checking for strcasecmp... yes | |
| checking for strchr... yes | |
| checking for strstr... yes | |
| checking whether build environment is sane... yes | |
| checking for a thread-safe mkdir -p... ./install-sh -c -d | |
| checking for gawk... no | |
| checking for mawk... no | |
| checking for nawk... no | |
| checking for awk... awk | |
| checking whether make sets $(MAKE)... yes | |
| checking for style of include used by make... GNU | |
| checking whether make supports nested variables... yes | |
| checking dependency style of clang... none | |
| checking that generated files are newer than configure... done | |
| configure: creating ./config.status | |
| config.status: creating Makefile | |
| config.status: creating config.h | |
| config.status: executing depfiles commands | |
| configure: WARNING: unrecognized options: --disable-debug |
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| clang called with: --version | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem --version -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -v | |
| superenv executed: clang -v | |
| clang called with: -V | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem -V -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -qversion | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem -qversion -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -o conftest conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem -o conftest conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -o conftest conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem -o conftest conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -c conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -g conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -g conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -g -O2 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -g -O2 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -E conftest.c | |
| superenv added: -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -E conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -E conftest.c | |
| superenv added: -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -E conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -E conftest.c | |
| superenv added: -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -E conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -E conftest.c | |
| superenv added: -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -E conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -E conftest.c | |
| superenv added: -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -E conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -E conftest.c | |
| superenv added: -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -E conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -o conftest -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem -o conftest -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -c -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -o conftest -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem -o conftest -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -o conftest -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem -o conftest -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -c -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -E conftest.c | |
| superenv added: -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -E conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -E conftest.c | |
| superenv added: -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -E conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -c -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -Os -march=nehalem -c -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -o conftest -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem -o conftest -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -o conftest -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem -o conftest -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -o conftest -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem -o conftest -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -o conftest -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem -o conftest -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -o conftest -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem -o conftest -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -o conftest -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem -o conftest -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -o conftest -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem -o conftest -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -o conftest -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem -o conftest -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -o conftest -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem -o conftest -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -o conftest -O3 conftest.c | |
| superenv added: -pipe -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -Os -march=nehalem -o conftest -O3 conftest.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
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| 2022-11-28 13:38:06 +0000 | |
| make | |
| install | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/alignio.o src/alignio.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/sqerror.o src/sqerror.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/sqio.o src/sqio.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/iupac.o src/iupac.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/msf.o src/msf.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/revcomp.o src/revcomp.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/selex.o src/selex.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/sre_ctype.o src/sre_ctype.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/sre_math.o src/sre_math.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/sre_string.o src/sre_string.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/stack.o src/stack.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/types.o src/types.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/gnuregex.o src/gnuregex.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/interleaved.o src/interleaved.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/getopt.o src/getopt.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/eufind_main.o src/eufind_main.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/pavesi.o src/pavesi.c | |
| clang -O -O3 -o bin/eufindtRNA src/alignio.o src/sqerror.o src/sqio.o src/iupac.o src/msf.o src/revcomp.o src/selex.o src/sre_ctype.o src/sre_math.o src/sre_string.o src/stack.o src/types.o src/gnuregex.o src/interleaved.o src/getopt.o src/eufind_main.o src/pavesi.o -lm | |
| clang -DHAVE_CONFIG_H -I. -DTSCANDIR=\"/usr/local/Cellar/trnascan/2.0.11/lib\/tRNAscan-SE\/models\" -O -O3 -c -o src/bin_trnascan_1_4-trnascan.o `test -f 'src/trnascan.c' || echo './'`src/trnascan.c | |
| clang -DTSCANDIR=\"/usr/local/Cellar/trnascan/2.0.11/lib\/tRNAscan-SE\/models\" -O -O3 -o bin/trnascan-1.4 src/bin_trnascan_1_4-trnascan.o -lm | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/align.o src/align.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/dbviterbi.o src/dbviterbi.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/debug.o src/debug.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/emit.o src/emit.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/fast-dbviterbi.o src/fast-dbviterbi.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/fastmodelmaker.o src/fastmodelmaker.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/konings.o src/konings.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/lengthdist.o src/lengthdist.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/maxmodelmaker.o src/maxmodelmaker.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/misc.o src/misc.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/model.o src/model.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/modelmaking.o src/modelmaking.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/prior.o src/prior.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/probify.o src/probify.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/save.o src/save.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/smallviterbi.o src/smallviterbi.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/scorestack.o src/scorestack.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/structs.o src/structs.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/trace.o src/trace.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/viterbi.o src/viterbi.c | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/scan_main.o src/scan_main.c | |
| clang -O -O3 -o bin/covels-SE src/align.o src/dbviterbi.o src/debug.o src/emit.o src/fast-dbviterbi.o src/fastmodelmaker.o src/konings.o src/lengthdist.o src/maxmodelmaker.o src/misc.o src/model.o src/modelmaking.o src/prior.o src/probify.o src/save.o src/smallviterbi.o src/scorestack.o src/structs.o src/trace.o src/viterbi.o src/alignio.o src/sqerror.o src/sqio.o src/iupac.o src/msf.o src/revcomp.o src/selex.o src/sre_ctype.o src/sre_math.o src/sre_string.o src/stack.o src/types.o src/gnuregex.o src/interleaved.o src/getopt.o src/scan_main.o -lm | |
| clang -DHAVE_CONFIG_H -I. -O -O3 -c -o src/score_main.o src/score_main.c | |
| clang -O -O3 -o bin/coves-SE src/align.o src/dbviterbi.o src/debug.o src/emit.o src/fast-dbviterbi.o src/fastmodelmaker.o src/konings.o src/lengthdist.o src/maxmodelmaker.o src/misc.o src/model.o src/modelmaking.o src/prior.o src/probify.o src/save.o src/smallviterbi.o src/scorestack.o src/structs.o src/trace.o src/viterbi.o src/alignio.o src/sqerror.o src/sqio.o src/iupac.o src/msf.o src/revcomp.o src/selex.o src/sre_ctype.o src/sre_math.o src/sre_string.o src/stack.o src/types.o src/gnuregex.o src/interleaved.o src/getopt.o src/score_main.o -lm | |
| sed -e 's,\@bindir\@,/usr/local/Cellar/trnascan/2.0.11/bin,g' -e 's,\@libdir\@,/usr/local/Cellar/trnascan/2.0.11/lib,g' -e 's,[@]PERL[@],/usr/bin/perl,g' -e 's,\@INFERNAL\@,,g' < ./src/sstofa.in > bin/sstofa | |
| chmod +x bin/sstofa | |
| sed -e 's,\@bindir\@,/usr/local/Cellar/trnascan/2.0.11/bin,g' -e 's,\@libdir\@,/usr/local/Cellar/trnascan/2.0.11/lib,g' -e 's,[@]PERL[@],/usr/bin/perl,g' -e 's,\@INFERNAL\@,,g' < ./src/fasta2gsi.in > bin/fasta2gsi | |
| chmod +x bin/fasta2gsi | |
| sed -e 's,\@bindir\@,/usr/local/Cellar/trnascan/2.0.11/bin,g' -e 's,\@libdir\@,/usr/local/Cellar/trnascan/2.0.11/lib,g' -e 's,[@]PERL[@],/usr/bin/perl,g' -e 's,\@INFERNAL\@,,g' < ./EukHighConfidenceFilter.in > bin/EukHighConfidenceFilter | |
| chmod +x bin/EukHighConfidenceFilter | |
| sed -e 's,\@bindir\@,/usr/local/Cellar/trnascan/2.0.11/bin,g' -e 's,\@libdir\@,/usr/local/Cellar/trnascan/2.0.11/lib,g' -e 's,[@]PERL[@],/usr/bin/perl,g' -e 's,\@INFERNAL\@,,g' < ./MitoHighConfidenceFilter.in > bin/MitoHighConfidenceFilter | |
| chmod +x bin/MitoHighConfidenceFilter | |
| sed -e 's,\@bindir\@,/usr/local/Cellar/trnascan/2.0.11/bin,g' -e 's,\@libdir\@,/usr/local/Cellar/trnascan/2.0.11/lib,g' -e 's,[@]PERL[@],/usr/bin/perl,g' -e 's,\@INFERNAL\@,,g' < ./tRNAscan-SE.src > tRNAscan-SE | |
| chmod +x tRNAscan-SE | |
| sed -e 's,\@bindir\@,/usr/local/Cellar/trnascan/2.0.11/bin,g' -e 's,\@libdir\@,/usr/local/Cellar/trnascan/2.0.11/lib,g' -e 's,[@]PERL[@],/usr/bin/perl,g' -e 's,\@INFERNAL\@,,g' < ./tRNAscan-SE.conf.src > tRNAscan-SE.conf | |
| chmod +x tRNAscan-SE.conf | |
| (CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /private/tmp/trnascan-20221128-1367-ojvt96/tRNAscan-SE-2.0/missing autoheader) | |
| /private/tmp/trnascan-20221128-1367-ojvt96/tRNAscan-SE-2.0/missing: line 81: autoheader: command not found | |
| WARNING: 'autoheader' is missing on your system. | |
| You should only need it if you modified 'acconfig.h' or | |
| 'configure.ac' or m4 files included by 'configure.ac'. | |
| The 'autoheader' program is part of the GNU Autoconf package: | |
| <http://www.gnu.org/software/autoconf/> | |
| It also requires GNU m4 and Perl in order to run: | |
| <http://www.gnu.org/software/m4/> | |
| <http://www.perl.org/> | |
| make: *** [config.h.in] Error 127 | |
| HOMEBREW_VERSION: 3.6.12-20-g9c88c39 | |
| ORIGIN: https://github.com/Homebrew/brew | |
| HEAD: 9c88c39baead6bbc40b12ab1eae9b63bcb5a8042 | |
| Last commit: 4 days ago | |
| Core tap ORIGIN: https://github.com/Homebrew/homebrew-core | |
| Core tap HEAD: 3dfe90dfad30c81007345ffaa9a03c30723f86b3 | |
| Core tap last commit: 35 minutes ago | |
| Core tap branch: master | |
| HOMEBREW_PREFIX: /usr/local | |
| HOMEBREW_CASK_OPTS: [] | |
| HOMEBREW_DISPLAY: /private/tmp/com.apple.launchd.XXwrGVj0o5/org.xquartz:0 | |
| HOMEBREW_EDITOR: vi | |
| HOMEBREW_MAKE_JOBS: 8 | |
| HOMEBREW_NO_BOOTSNAP: set | |
| Homebrew Ruby: 2.6.8 => /System/Library/Frameworks/Ruby.framework/Versions/2.6/usr/bin/ruby | |
| CPU: octa-core 64-bit icelake | |
| Clang: 13.1.6 build 1316 | |
| Git: 2.32.1 => /Library/Developer/CommandLineTools/usr/bin/git | |
| Curl: 7.79.1 => /usr/bin/curl | |
| macOS: 12.5.1-x86_64 | |
| CLT: 13.4.0.0.1.1651278267 | |
| Xcode: N/A | |
| HOMEBREW_CC: clang | |
| HOMEBREW_CXX: clang++ | |
| CMAKE_PREFIX_PATH: /usr/local | |
| CMAKE_INCLUDE_PATH: /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| CMAKE_LIBRARY_PATH: /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/usr/local/Homebrew/Library/Homebrew/os/mac/pkgconfig/12 | |
| HOMEBREW_GIT: git | |
| HOMEBREW_SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk | |
| ACLOCAL_PATH: /usr/local/share/aclocal | |
| PATH: /usr/local/Homebrew/Library/Homebrew/shims/mac/super:/usr/local/opt/infernal/bin:/usr/bin:/bin:/usr/sbin:/sbin |
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| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/alignio.o src/alignio.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/alignio.o src/alignio.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/sqerror.o src/sqerror.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/sqerror.o src/sqerror.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/sqio.o src/sqio.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/sqio.o src/sqio.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/iupac.o src/iupac.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/iupac.o src/iupac.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/msf.o src/msf.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/msf.o src/msf.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/revcomp.o src/revcomp.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/revcomp.o src/revcomp.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/selex.o src/selex.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/selex.o src/selex.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/sre_ctype.o src/sre_ctype.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/sre_ctype.o src/sre_ctype.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/sre_math.o src/sre_math.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/sre_math.o src/sre_math.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/sre_string.o src/sre_string.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/sre_string.o src/sre_string.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/stack.o src/stack.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/stack.o src/stack.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/types.o src/types.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/types.o src/types.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/gnuregex.o src/gnuregex.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/gnuregex.o src/gnuregex.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/interleaved.o src/interleaved.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/interleaved.o src/interleaved.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/getopt.o src/getopt.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/getopt.o src/getopt.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/eufind_main.o src/eufind_main.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/eufind_main.o src/eufind_main.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/pavesi.o src/pavesi.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/pavesi.o src/pavesi.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -O -O3 -o bin/eufindtRNA src/alignio.o src/sqerror.o src/sqio.o src/iupac.o src/msf.o src/revcomp.o src/selex.o src/sre_ctype.o src/sre_math.o src/sre_string.o src/stack.o src/types.o src/gnuregex.o src/interleaved.o src/getopt.o src/eufind_main.o src/pavesi.o -lm | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -w -Os -march=nehalem -o bin/eufindtRNA src/alignio.o src/sqerror.o src/sqio.o src/iupac.o src/msf.o src/revcomp.o src/selex.o src/sre_ctype.o src/sre_math.o src/sre_string.o src/stack.o src/types.o src/gnuregex.o src/interleaved.o src/getopt.o src/eufind_main.o src/pavesi.o -lm -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -DHAVE_CONFIG_H -I. -DTSCANDIR="/usr/local/Cellar/trnascan/2.0.11/lib/tRNAscan-SE/models" -O -O3 -c -o src/bin_trnascan_1_4-trnascan.o src/trnascan.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -DTSCANDIR="/usr/local/Cellar/trnascan/2.0.11/lib/tRNAscan-SE/models" -c -o src/bin_trnascan_1_4-trnascan.o src/trnascan.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DTSCANDIR="/usr/local/Cellar/trnascan/2.0.11/lib/tRNAscan-SE/models" -O -O3 -o bin/trnascan-1.4 src/bin_trnascan_1_4-trnascan.o -lm | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DTSCANDIR="/usr/local/Cellar/trnascan/2.0.11/lib/tRNAscan-SE/models" -o bin/trnascan-1.4 src/bin_trnascan_1_4-trnascan.o -lm -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/align.o src/align.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/align.o src/align.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/dbviterbi.o src/dbviterbi.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/dbviterbi.o src/dbviterbi.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/debug.o src/debug.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/debug.o src/debug.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/emit.o src/emit.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/emit.o src/emit.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/fast-dbviterbi.o src/fast-dbviterbi.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/fast-dbviterbi.o src/fast-dbviterbi.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/fastmodelmaker.o src/fastmodelmaker.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/fastmodelmaker.o src/fastmodelmaker.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/konings.o src/konings.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/konings.o src/konings.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/lengthdist.o src/lengthdist.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/lengthdist.o src/lengthdist.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/maxmodelmaker.o src/maxmodelmaker.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/maxmodelmaker.o src/maxmodelmaker.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/misc.o src/misc.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/misc.o src/misc.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/model.o src/model.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/model.o src/model.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/modelmaking.o src/modelmaking.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/modelmaking.o src/modelmaking.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/prior.o src/prior.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/prior.o src/prior.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/probify.o src/probify.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/probify.o src/probify.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/save.o src/save.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/save.o src/save.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/smallviterbi.o src/smallviterbi.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/smallviterbi.o src/smallviterbi.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/scorestack.o src/scorestack.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/scorestack.o src/scorestack.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/structs.o src/structs.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/structs.o src/structs.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/trace.o src/trace.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/trace.o src/trace.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/viterbi.o src/viterbi.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/viterbi.o src/viterbi.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/scan_main.o src/scan_main.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/scan_main.o src/scan_main.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -O -O3 -o bin/covels-SE src/align.o src/dbviterbi.o src/debug.o src/emit.o src/fast-dbviterbi.o src/fastmodelmaker.o src/konings.o src/lengthdist.o src/maxmodelmaker.o src/misc.o src/model.o src/modelmaking.o src/prior.o src/probify.o src/save.o src/smallviterbi.o src/scorestack.o src/structs.o src/trace.o src/viterbi.o src/alignio.o src/sqerror.o src/sqio.o src/iupac.o src/msf.o src/revcomp.o src/selex.o src/sre_ctype.o src/sre_math.o src/sre_string.o src/stack.o src/types.o src/gnuregex.o src/interleaved.o src/getopt.o src/scan_main.o -lm | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -w -Os -march=nehalem -o bin/covels-SE src/align.o src/dbviterbi.o src/debug.o src/emit.o src/fast-dbviterbi.o src/fastmodelmaker.o src/konings.o src/lengthdist.o src/maxmodelmaker.o src/misc.o src/model.o src/modelmaking.o src/prior.o src/probify.o src/save.o src/smallviterbi.o src/scorestack.o src/structs.o src/trace.o src/viterbi.o src/alignio.o src/sqerror.o src/sqio.o src/iupac.o src/msf.o src/revcomp.o src/selex.o src/sre_ctype.o src/sre_math.o src/sre_string.o src/stack.o src/types.o src/gnuregex.o src/interleaved.o src/getopt.o src/scan_main.o -lm -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| clang called with: -DHAVE_CONFIG_H -I. -O -O3 -c -o src/score_main.o src/score_main.c | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang -pipe -w -Os -march=nehalem -DHAVE_CONFIG_H -I. -c -o src/score_main.o src/score_main.c -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| clang called with: -O -O3 -o bin/coves-SE src/align.o src/dbviterbi.o src/debug.o src/emit.o src/fast-dbviterbi.o src/fastmodelmaker.o src/konings.o src/lengthdist.o src/maxmodelmaker.o src/misc.o src/model.o src/modelmaking.o src/prior.o src/probify.o src/save.o src/smallviterbi.o src/scorestack.o src/structs.o src/trace.o src/viterbi.o src/alignio.o src/sqerror.o src/sqio.o src/iupac.o src/msf.o src/revcomp.o src/selex.o src/sre_ctype.o src/sre_math.o src/sre_string.o src/stack.o src/types.o src/gnuregex.o src/interleaved.o src/getopt.o src/score_main.o -lm | |
| superenv removed: -O -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: clang -pipe -w -Os -march=nehalem -o bin/coves-SE src/align.o src/dbviterbi.o src/debug.o src/emit.o src/fast-dbviterbi.o src/fastmodelmaker.o src/konings.o src/lengthdist.o src/maxmodelmaker.o src/misc.o src/model.o src/modelmaking.o src/prior.o src/probify.o src/save.o src/smallviterbi.o src/scorestack.o src/structs.o src/trace.o src/viterbi.o src/alignio.o src/sqerror.o src/sqio.o src/iupac.o src/msf.o src/revcomp.o src/selex.o src/sre_ctype.o src/sre_math.o src/sre_string.o src/stack.o src/types.o src/gnuregex.o src/interleaved.o src/getopt.o src/score_main.o -lm -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk --sysroot=/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -isystem/usr/local/include -isystem/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
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| This file contains any messages produced by compilers while | |
| running configure, to aid debugging if configure makes a mistake. | |
| It was created by tRNAscan-SE configure 2.0.0, which was | |
| generated by GNU Autoconf 2.69. Invocation command line was | |
| $ ./configure --disable-debug --disable-dependency-tracking --disable-silent-rules --prefix=/usr/local/Cellar/trnascan/2.0.11 | |
| ## --------- ## | |
| ## Platform. ## | |
| ## --------- ## | |
| hostname = ipsec-10-2-195-43.vpn.gatech.edu | |
| uname -m = x86_64 | |
| uname -r = 21.6.0 | |
| uname -s = Darwin | |
| uname -v = Darwin Kernel Version 21.6.0: Wed Aug 10 14:25:27 PDT 2022; root:xnu-8020.141.5~2/RELEASE_X86_64 | |
| /usr/bin/uname -p = i386 | |
| /bin/uname -X = unknown | |
| /bin/arch = unknown | |
| /usr/bin/arch -k = unknown | |
| /usr/convex/getsysinfo = unknown | |
| /usr/bin/hostinfo = Mach kernel version: | |
| Darwin Kernel Version 21.6.0: Wed Aug 10 14:25:27 PDT 2022; root:xnu-8020.141.5~2/RELEASE_X86_64 | |
| Kernel configured for up to 8 processors. | |
| 4 processors are physically available. | |
| 8 processors are logically available. | |
| Processor type: x86_64h (Intel x86-64h Haswell) | |
| Processors active: 0 1 2 3 4 5 6 7 | |
| Primary memory available: 32.00 gigabytes | |
| Default processor set: 741 tasks, 4316 threads, 8 processors | |
| Load average: 6.15, Mach factor: 3.08 | |
| /bin/machine = unknown | |
| /usr/bin/oslevel = unknown | |
| /bin/universe = unknown | |
| PATH: /usr/local/Homebrew/Library/Homebrew/shims/mac/super | |
| PATH: /usr/local/opt/infernal/bin | |
| PATH: /usr/bin | |
| PATH: /bin | |
| PATH: /usr/sbin | |
| PATH: /sbin | |
| ## ----------- ## | |
| ## Core tests. ## | |
| ## ----------- ## | |
| configure:2265: checking for gcc | |
| configure:2292: result: clang | |
| configure:2521: checking for C compiler version | |
| configure:2530: clang --version >&5 | |
| Apple clang version 13.1.6 (clang-1316.0.21.2.5) | |
| Target: x86_64-apple-darwin21.6.0 | |
| Thread model: posix | |
| InstalledDir: /Library/Developer/CommandLineTools/usr/bin | |
| configure:2541: $? = 0 | |
| configure:2530: clang -v >&5 | |
| Apple clang version 13.1.6 (clang-1316.0.21.2.5) | |
| Target: x86_64-apple-darwin21.6.0 | |
| Thread model: posix | |
| InstalledDir: /Library/Developer/CommandLineTools/usr/bin | |
| configure:2541: $? = 0 | |
| configure:2530: clang -V >&5 | |
| clang: error: unsupported option '-V -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk' | |
| configure:2541: $? = 1 | |
| configure:2530: clang -qversion >&5 | |
| clang: error: unknown argument '-qversion'; did you mean '--version'? | |
| configure:2541: $? = 1 | |
| configure:2561: checking whether the C compiler works | |
| configure:2583: clang conftest.c >&5 | |
| configure:2587: $? = 0 | |
| configure:2635: result: yes | |
| configure:2638: checking for C compiler default output file name | |
| configure:2640: result: a.out | |
| configure:2646: checking for suffix of executables | |
| configure:2653: clang -o conftest conftest.c >&5 | |
| configure:2657: $? = 0 | |
| configure:2679: result: | |
| configure:2701: checking whether we are cross compiling | |
| configure:2709: clang -o conftest conftest.c >&5 | |
| configure:2713: $? = 0 | |
| configure:2720: ./conftest | |
| configure:2724: $? = 0 | |
| configure:2739: result: no | |
| configure:2744: checking for suffix of object files | |
| configure:2766: clang -c conftest.c >&5 | |
| configure:2770: $? = 0 | |
| configure:2791: result: o | |
| configure:2795: checking whether we are using the GNU C compiler | |
| configure:2814: clang -c conftest.c >&5 | |
| configure:2814: $? = 0 | |
| configure:2823: result: yes | |
| configure:2832: checking whether clang accepts -g | |
| configure:2852: clang -c -g conftest.c >&5 | |
| configure:2852: $? = 0 | |
| configure:2893: result: yes | |
| configure:2910: checking for clang option to accept ISO C89 | |
| configure:2973: clang -c -g -O2 conftest.c >&5 | |
| configure:2973: $? = 0 | |
| configure:2986: result: none needed | |
| configure:3057: checking for a BSD-compatible install | |
| configure:3125: result: /usr/bin/install -c | |
| configure:3140: checking for perl | |
| configure:3158: found /usr/bin/perl | |
| configure:3170: result: /usr/bin/perl | |
| configure:3181: checking for Perl version 5.0.0 or later | |
| configure:3187: result: yes | |
| configure:3193: result: | |
| configure:3203: checking how to run the C preprocessor | |
| configure:3234: clang -E conftest.c | |
| configure:3234: $? = 0 | |
| configure:3248: clang -E conftest.c | |
| conftest.c:9:10: fatal error: 'ac_nonexistent.h' file not found | |
| #include <ac_nonexistent.h> | |
| ^~~~~~~~~~~~~~~~~~ | |
| 1 error generated. | |
| configure:3248: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "tRNAscan-SE" | |
| | #define PACKAGE_TARNAME "trnascan-se" | |
| | #define PACKAGE_VERSION "2.0.0" | |
| | #define PACKAGE_STRING "tRNAscan-SE 2.0.0" | |
| | #define PACKAGE_BUGREPORT "pchan@soe.ucsc.edu" | |
| | #define PACKAGE_URL "" | |
| | /* end confdefs.h. */ | |
| | #include <ac_nonexistent.h> | |
| configure:3273: result: clang -E | |
| configure:3293: clang -E conftest.c | |
| configure:3293: $? = 0 | |
| configure:3307: clang -E conftest.c | |
| conftest.c:9:10: fatal error: 'ac_nonexistent.h' file not found | |
| #include <ac_nonexistent.h> | |
| ^~~~~~~~~~~~~~~~~~ | |
| 1 error generated. | |
| configure:3307: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "tRNAscan-SE" | |
| | #define PACKAGE_TARNAME "trnascan-se" | |
| | #define PACKAGE_VERSION "2.0.0" | |
| | #define PACKAGE_STRING "tRNAscan-SE 2.0.0" | |
| | #define PACKAGE_BUGREPORT "pchan@soe.ucsc.edu" | |
| | #define PACKAGE_URL "" | |
| | /* end confdefs.h. */ | |
| | #include <ac_nonexistent.h> | |
| configure:3336: checking for grep that handles long lines and -e | |
| configure:3394: result: /usr/bin/grep | |
| configure:3399: checking for egrep | |
| configure:3461: result: /usr/bin/grep -E | |
| configure:3466: checking for ANSI C header files | |
| configure:3486: clang -c -O3 conftest.c >&5 | |
| configure:3486: $? = 0 | |
| configure:3559: clang -o conftest -O3 conftest.c >&5 | |
| configure:3559: $? = 0 | |
| configure:3559: ./conftest | |
| configure:3559: $? = 0 | |
| configure:3570: result: yes | |
| configure:3583: checking for sys/types.h | |
| configure:3583: clang -c -O3 conftest.c >&5 | |
| configure:3583: $? = 0 | |
| configure:3583: result: yes | |
| configure:3583: checking for sys/stat.h | |
| configure:3583: clang -c -O3 conftest.c >&5 | |
| configure:3583: $? = 0 | |
| configure:3583: result: yes | |
| configure:3583: checking for stdlib.h | |
| configure:3583: clang -c -O3 conftest.c >&5 | |
| configure:3583: $? = 0 | |
| configure:3583: result: yes | |
| configure:3583: checking for string.h | |
| configure:3583: clang -c -O3 conftest.c >&5 | |
| configure:3583: $? = 0 | |
| configure:3583: result: yes | |
| configure:3583: checking for memory.h | |
| configure:3583: clang -c -O3 conftest.c >&5 | |
| configure:3583: $? = 0 | |
| configure:3583: result: yes | |
| configure:3583: checking for strings.h | |
| configure:3583: clang -c -O3 conftest.c >&5 | |
| configure:3583: $? = 0 | |
| configure:3583: result: yes | |
| configure:3583: checking for inttypes.h | |
| configure:3583: clang -c -O3 conftest.c >&5 | |
| configure:3583: $? = 0 | |
| configure:3583: result: yes | |
| configure:3583: checking for stdint.h | |
| configure:3583: clang -c -O3 conftest.c >&5 | |
| configure:3583: $? = 0 | |
| configure:3583: result: yes | |
| configure:3583: checking for unistd.h | |
| configure:3583: clang -c -O3 conftest.c >&5 | |
| configure:3583: $? = 0 | |
| configure:3583: result: yes | |
| configure:3595: checking for size_t | |
| configure:3595: clang -c -O3 conftest.c >&5 | |
| configure:3595: $? = 0 | |
| configure:3595: clang -c -O3 conftest.c >&5 | |
| conftest.c:55:21: error: expected expression | |
| if (sizeof ((size_t))) | |
| ^ | |
| 1 error generated. | |
| configure:3595: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "tRNAscan-SE" | |
| | #define PACKAGE_TARNAME "trnascan-se" | |
| | #define PACKAGE_VERSION "2.0.0" | |
| | #define PACKAGE_STRING "tRNAscan-SE 2.0.0" | |
| | #define PACKAGE_BUGREPORT "pchan@soe.ucsc.edu" | |
| | #define PACKAGE_URL "" | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | /* end confdefs.h. */ | |
| | #include <stdio.h> | |
| | #ifdef HAVE_SYS_TYPES_H | |
| | # include <sys/types.h> | |
| | #endif | |
| | #ifdef HAVE_SYS_STAT_H | |
| | # include <sys/stat.h> | |
| | #endif | |
| | #ifdef STDC_HEADERS | |
| | # include <stdlib.h> | |
| | # include <stddef.h> | |
| | #else | |
| | # ifdef HAVE_STDLIB_H | |
| | # include <stdlib.h> | |
| | # endif | |
| | #endif | |
| | #ifdef HAVE_STRING_H | |
| | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | |
| | # include <memory.h> | |
| | # endif | |
| | # include <string.h> | |
| | #endif | |
| | #ifdef HAVE_STRINGS_H | |
| | # include <strings.h> | |
| | #endif | |
| | #ifdef HAVE_INTTYPES_H | |
| | # include <inttypes.h> | |
| | #endif | |
| | #ifdef HAVE_STDINT_H | |
| | # include <stdint.h> | |
| | #endif | |
| | #ifdef HAVE_UNISTD_H | |
| | # include <unistd.h> | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | if (sizeof ((size_t))) | |
| | return 0; | |
| | ; | |
| | return 0; | |
| | } | |
| configure:3595: result: yes | |
| configure:3608: checking for working alloca.h | |
| configure:3625: clang -o conftest -O3 conftest.c >&5 | |
| configure:3625: $? = 0 | |
| configure:3633: result: yes | |
| configure:3641: checking for alloca | |
| configure:3678: clang -o conftest -O3 conftest.c >&5 | |
| configure:3678: $? = 0 | |
| configure:3686: result: yes | |
| configure:3795: checking limits.h usability | |
| configure:3795: clang -c -O3 conftest.c >&5 | |
| configure:3795: $? = 0 | |
| configure:3795: result: yes | |
| configure:3795: checking limits.h presence | |
| configure:3795: clang -E conftest.c | |
| configure:3795: $? = 0 | |
| configure:3795: result: yes | |
| configure:3795: checking for limits.h | |
| configure:3795: result: yes | |
| configure:3795: checking for memory.h | |
| configure:3795: result: yes | |
| configure:3795: checking stddef.h usability | |
| configure:3795: clang -c -O3 conftest.c >&5 | |
| configure:3795: $? = 0 | |
| configure:3795: result: yes | |
| configure:3795: checking stddef.h presence | |
| configure:3795: clang -E conftest.c | |
| configure:3795: $? = 0 | |
| configure:3795: result: yes | |
| configure:3795: checking for stddef.h | |
| configure:3795: result: yes | |
| configure:3795: checking for stdlib.h | |
| configure:3795: result: yes | |
| configure:3795: checking for string.h | |
| configure:3795: result: yes | |
| configure:3795: checking for unistd.h | |
| configure:3795: result: yes | |
| configure:3807: checking for stdbool.h that conforms to C99 | |
| configure:3874: clang -c -O3 conftest.c >&5 | |
| conftest.c:76:24: warning: address of 's' will always evaluate to 'true' [-Wpointer-bool-conversion] | |
| bool e = &s; | |
| ~ ^ | |
| conftest.c:81:40: warning: address of array 'p' will always evaluate to 'true' [-Wpointer-bool-conversion] | |
| ~^ | |
| conftest.c:81:35: warning: address of array 'o' will always evaluate to 'true' [-Wpointer-bool-conversion] | |
| ~^ | |
| conftest.c:81:30: warning: address of array 'n' will always evaluate to 'true' [-Wpointer-bool-conversion] | |
| ~^ | |
| conftest.c:80:63: warning: address of array 'i' will always evaluate to 'true' [-Wpointer-bool-conversion] | |
| return (!a + !b + !c + !d + !e + !f + !g + !h + !i + !!j + !k + !!l | |
| ~^ | |
| conftest.c:80:58: warning: address of array 'h' will always evaluate to 'true' [-Wpointer-bool-conversion] | |
| return (!a + !b + !c + !d + !e + !f + !g + !h + !i + !!j + !k + !!l | |
| ~^ | |
| conftest.c:80:53: warning: address of array 'g' will always evaluate to 'true' [-Wpointer-bool-conversion] | |
| return (!a + !b + !c + !d + !e + !f + !g + !h + !i + !!j + !k + !!l | |
| ~^ | |
| conftest.c:80:48: warning: address of array 'f' will always evaluate to 'true' [-Wpointer-bool-conversion] | |
| return (!a + !b + !c + !d + !e + !f + !g + !h + !i + !!j + !k + !!l | |
| ~^ | |
| conftest.c:80:38: warning: address of array 'd' will always evaluate to 'true' [-Wpointer-bool-conversion] | |
| return (!a + !b + !c + !d + !e + !f + !g + !h + !i + !!j + !k + !!l | |
| ~^ | |
| conftest.c:80:33: warning: address of array 'c' will always evaluate to 'true' [-Wpointer-bool-conversion] | |
| return (!a + !b + !c + !d + !e + !f + !g + !h + !i + !!j + !k + !!l | |
| ~^ | |
| conftest.c:80:28: warning: address of array 'b' will always evaluate to 'true' [-Wpointer-bool-conversion] | |
| return (!a + !b + !c + !d + !e + !f + !g + !h + !i + !!j + !k + !!l | |
| ~^ | |
| conftest.c:80:23: warning: address of array 'a' will always evaluate to 'true' [-Wpointer-bool-conversion] | |
| return (!a + !b + !c + !d + !e + !f + !g + !h + !i + !!j + !k + !!l | |
| ~^ | |
| 12 warnings generated. | |
| configure:3874: $? = 0 | |
| configure:3881: result: yes | |
| configure:3883: checking for _Bool | |
| configure:3883: clang -c -O3 conftest.c >&5 | |
| configure:3883: $? = 0 | |
| configure:3883: clang -c -O3 conftest.c >&5 | |
| conftest.c:63:20: error: expected expression | |
| if (sizeof ((_Bool))) | |
| ^ | |
| 1 error generated. | |
| configure:3883: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "tRNAscan-SE" | |
| | #define PACKAGE_TARNAME "trnascan-se" | |
| | #define PACKAGE_VERSION "2.0.0" | |
| | #define PACKAGE_STRING "tRNAscan-SE 2.0.0" | |
| | #define PACKAGE_BUGREPORT "pchan@soe.ucsc.edu" | |
| | #define PACKAGE_URL "" | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STDDEF_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | /* end confdefs.h. */ | |
| | #include <stdio.h> | |
| | #ifdef HAVE_SYS_TYPES_H | |
| | # include <sys/types.h> | |
| | #endif | |
| | #ifdef HAVE_SYS_STAT_H | |
| | # include <sys/stat.h> | |
| | #endif | |
| | #ifdef STDC_HEADERS | |
| | # include <stdlib.h> | |
| | # include <stddef.h> | |
| | #else | |
| | # ifdef HAVE_STDLIB_H | |
| | # include <stdlib.h> | |
| | # endif | |
| | #endif | |
| | #ifdef HAVE_STRING_H | |
| | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | |
| | # include <memory.h> | |
| | # endif | |
| | # include <string.h> | |
| | #endif | |
| | #ifdef HAVE_STRINGS_H | |
| | # include <strings.h> | |
| | #endif | |
| | #ifdef HAVE_INTTYPES_H | |
| | # include <inttypes.h> | |
| | #endif | |
| | #ifdef HAVE_STDINT_H | |
| | # include <stdint.h> | |
| | #endif | |
| | #ifdef HAVE_UNISTD_H | |
| | # include <unistd.h> | |
| | #endif | |
| | int | |
| | main () | |
| | { | |
| | if (sizeof ((_Bool))) | |
| | return 0; | |
| | ; | |
| | return 0; | |
| | } | |
| configure:3883: result: yes | |
| configure:3894: checking for size_t | |
| configure:3894: result: yes | |
| configure:3909: checking for stdlib.h | |
| configure:3909: result: yes | |
| configure:3919: checking for GNU libc compatible malloc | |
| configure:3943: clang -o conftest -O3 conftest.c >&5 | |
| configure:3943: $? = 0 | |
| configure:3943: ./conftest | |
| configure:3943: $? = 0 | |
| configure:3953: result: yes | |
| configure:3976: checking for stdlib.h | |
| configure:3976: result: yes | |
| configure:3986: checking for GNU libc compatible realloc | |
| configure:4010: clang -o conftest -O3 conftest.c >&5 | |
| configure:4010: $? = 0 | |
| configure:4010: ./conftest | |
| configure:4010: $? = 0 | |
| configure:4020: result: yes | |
| configure:4044: checking for bzero | |
| configure:4044: clang -o conftest -O3 conftest.c >&5 | |
| conftest.c:55:6: warning: incompatible redeclaration of library function 'bzero' [-Wincompatible-library-redeclaration] | |
| char bzero (); | |
| ^ | |
| conftest.c:55:6: note: 'bzero' is a builtin with type 'void (void *, unsigned long)' | |
| 1 warning generated. | |
| configure:4044: $? = 0 | |
| configure:4044: result: yes | |
| configure:4044: checking for memset | |
| configure:4044: clang -o conftest -O3 conftest.c >&5 | |
| conftest.c:56:6: warning: incompatible redeclaration of library function 'memset' [-Wincompatible-library-redeclaration] | |
| char memset (); | |
| ^ | |
| conftest.c:56:6: note: 'memset' is a builtin with type 'void *(void *, int, unsigned long)' | |
| 1 warning generated. | |
| configure:4044: $? = 0 | |
| configure:4044: result: yes | |
| configure:4044: checking for re_comp | |
| configure:4044: clang -o conftest -O3 conftest.c >&5 | |
| Undefined symbols for architecture x86_64: | |
| "_re_comp", referenced from: | |
| _main in conftest-3fc583.o | |
| ld: symbol(s) not found for architecture x86_64 | |
| clang: error: linker command failed with exit code 1 (use -v to see invocation) | |
| configure:4044: $? = 1 | |
| configure: failed program was: | |
| | /* confdefs.h */ | |
| | #define PACKAGE_NAME "tRNAscan-SE" | |
| | #define PACKAGE_TARNAME "trnascan-se" | |
| | #define PACKAGE_VERSION "2.0.0" | |
| | #define PACKAGE_STRING "tRNAscan-SE 2.0.0" | |
| | #define PACKAGE_BUGREPORT "pchan@soe.ucsc.edu" | |
| | #define PACKAGE_URL "" | |
| | #define STDC_HEADERS 1 | |
| | #define HAVE_SYS_TYPES_H 1 | |
| | #define HAVE_SYS_STAT_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STRINGS_H 1 | |
| | #define HAVE_INTTYPES_H 1 | |
| | #define HAVE_STDINT_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE_ALLOCA_H 1 | |
| | #define HAVE_ALLOCA 1 | |
| | #define HAVE_LIMITS_H 1 | |
| | #define HAVE_MEMORY_H 1 | |
| | #define HAVE_STDDEF_H 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_STRING_H 1 | |
| | #define HAVE_UNISTD_H 1 | |
| | #define HAVE__BOOL 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_MALLOC 1 | |
| | #define HAVE_STDLIB_H 1 | |
| | #define HAVE_REALLOC 1 | |
| | #define HAVE_BZERO 1 | |
| | #define HAVE_MEMSET 1 | |
| | /* end confdefs.h. */ | |
| | /* Define re_comp to an innocuous variant, in case <limits.h> declares re_comp. | |
| | For example, HP-UX 11i <limits.h> declares gettimeofday. */ | |
| | #define re_comp innocuous_re_comp | |
| | | |
| | /* System header to define __stub macros and hopefully few prototypes, | |
| | which can conflict with char re_comp (); below. | |
| | Prefer <limits.h> to <assert.h> if __STDC__ is defined, since | |
| | <limits.h> exists even on freestanding compilers. */ | |
| | | |
| | #ifdef __STDC__ | |
| | # include <limits.h> | |
| | #else | |
| | # include <assert.h> | |
| | #endif | |
| | | |
| | #undef re_comp | |
| | | |
| | /* Override any GCC internal prototype to avoid an error. | |
| | Use char because int might match the return type of a GCC | |
| | builtin and then its argument prototype would still apply. */ | |
| | #ifdef __cplusplus | |
| | extern "C" | |
| | #endif | |
| | char re_comp (); | |
| | /* The GNU C library defines this for functions which it implements | |
| | to always fail with ENOSYS. Some functions are actually named | |
| | something starting with __ and the normal name is an alias. */ | |
| | #if defined __stub_re_comp || defined __stub___re_comp | |
| | choke me | |
| | #endif | |
| | | |
| | int | |
| | main () | |
| | { | |
| | return re_comp (); | |
| | ; | |
| | return 0; | |
| | } | |
| configure:4044: result: no | |
| configure:4044: checking for regcomp | |
| configure:4044: clang -o conftest -O3 conftest.c >&5 | |
| configure:4044: $? = 0 | |
| configure:4044: result: yes | |
| configure:4044: checking for sqrt | |
| configure:4044: clang -o conftest -O3 conftest.c >&5 | |
| conftest.c:58:6: warning: incompatible redeclaration of library function 'sqrt' [-Wincompatible-library-redeclaration] | |
| char sqrt (); | |
| ^ | |
| conftest.c:58:6: note: 'sqrt' is a builtin with type 'double (double)' | |
| 1 warning generated. | |
| configure:4044: $? = 0 | |
| configure:4044: result: yes | |
| configure:4044: checking for strcasecmp | |
| configure:4044: clang -o conftest -O3 conftest.c >&5 | |
| conftest.c:59:6: warning: incompatible redeclaration of library function 'strcasecmp' [-Wincompatible-library-redeclaration] | |
| char strcasecmp (); | |
| ^ | |
| conftest.c:59:6: note: 'strcasecmp' is a builtin with type 'int (const char *, const char *)' | |
| 1 warning generated. | |
| configure:4044: $? = 0 | |
| configure:4044: result: yes | |
| configure:4044: checking for strchr | |
| configure:4044: clang -o conftest -O3 conftest.c >&5 | |
| conftest.c:60:6: warning: incompatible redeclaration of library function 'strchr' [-Wincompatible-library-redeclaration] | |
| char strchr (); | |
| ^ | |
| conftest.c:60:6: note: 'strchr' is a builtin with type 'char *(const char *, int)' | |
| 1 warning generated. | |
| configure:4044: $? = 0 | |
| configure:4044: result: yes | |
| configure:4044: checking for strstr | |
| configure:4044: clang -o conftest -O3 conftest.c >&5 | |
| conftest.c:61:6: warning: incompatible redeclaration of library function 'strstr' [-Wincompatible-library-redeclaration] | |
| char strstr (); | |
| ^ | |
| conftest.c:61:6: note: 'strstr' is a builtin with type 'char *(const char *, const char *)' | |
| 1 warning generated. | |
| configure:4044: $? = 0 | |
| configure:4044: result: yes | |
| configure:4057: checking whether build environment is sane | |
| configure:4112: result: yes | |
| configure:4263: checking for a thread-safe mkdir -p | |
| configure:4302: result: ./install-sh -c -d | |
| configure:4309: checking for gawk | |
| configure:4339: result: no | |
| configure:4309: checking for mawk | |
| configure:4339: result: no | |
| configure:4309: checking for nawk | |
| configure:4339: result: no | |
| configure:4309: checking for awk | |
| configure:4325: found /usr/bin/awk | |
| configure:4336: result: awk | |
| configure:4347: checking whether make sets $(MAKE) | |
| configure:4369: result: yes | |
| configure:4399: checking for style of include used by make | |
| configure:4427: result: GNU | |
| configure:4461: checking whether make supports nested variables | |
| configure:4478: result: yes | |
| configure:4563: checking dependency style of clang | |
| configure:4674: result: none | |
| configure:4804: checking that generated files are newer than configure | |
| configure:4810: result: done | |
| configure:4833: creating ./config.status | |
| ## ---------------------- ## | |
| ## Running config.status. ## | |
| ## ---------------------- ## | |
| This file was extended by tRNAscan-SE config.status 2.0.0, which was | |
| generated by GNU Autoconf 2.69. Invocation command line was | |
| CONFIG_FILES = | |
| CONFIG_HEADERS = | |
| CONFIG_LINKS = | |
| CONFIG_COMMANDS = | |
| $ ./config.status | |
| on ipsec-10-2-195-43.vpn.gatech.edu | |
| config.status:874: creating Makefile | |
| config.status:874: creating config.h | |
| config.status:1103: executing depfiles commands | |
| configure:6145: WARNING: unrecognized options: --disable-debug | |
| ## ---------------- ## | |
| ## Cache variables. ## | |
| ## ---------------- ## | |
| ac_cv_c_compiler_gnu=yes | |
| ac_cv_env_CC_set=set | |
| ac_cv_env_CC_value=clang | |
| ac_cv_env_CFLAGS_set= | |
| ac_cv_env_CFLAGS_value= | |
| ac_cv_env_CPPFLAGS_set= | |
| ac_cv_env_CPPFLAGS_value= | |
| ac_cv_env_CPP_set= | |
| ac_cv_env_CPP_value= | |
| ac_cv_env_LDFLAGS_set= | |
| ac_cv_env_LDFLAGS_value= | |
| ac_cv_env_LIBS_set= | |
| ac_cv_env_LIBS_value= | |
| ac_cv_env_build_alias_set= | |
| ac_cv_env_build_alias_value= | |
| ac_cv_env_host_alias_set= | |
| ac_cv_env_host_alias_value= | |
| ac_cv_env_target_alias_set= | |
| ac_cv_env_target_alias_value= | |
| ac_cv_func_alloca_works=yes | |
| ac_cv_func_bzero=yes | |
| ac_cv_func_malloc_0_nonnull=yes | |
| ac_cv_func_memset=yes | |
| ac_cv_func_re_comp=no | |
| ac_cv_func_realloc_0_nonnull=yes | |
| ac_cv_func_regcomp=yes | |
| ac_cv_func_sqrt=yes | |
| ac_cv_func_strcasecmp=yes | |
| ac_cv_func_strchr=yes | |
| ac_cv_func_strstr=yes | |
| ac_cv_header_inttypes_h=yes | |
| ac_cv_header_limits_h=yes | |
| ac_cv_header_memory_h=yes | |
| ac_cv_header_stdbool_h=yes | |
| ac_cv_header_stdc=yes | |
| ac_cv_header_stddef_h=yes | |
| ac_cv_header_stdint_h=yes | |
| ac_cv_header_stdlib_h=yes | |
| ac_cv_header_string_h=yes | |
| ac_cv_header_strings_h=yes | |
| ac_cv_header_sys_stat_h=yes | |
| ac_cv_header_sys_types_h=yes | |
| ac_cv_header_unistd_h=yes | |
| ac_cv_objext=o | |
| ac_cv_path_EGREP='/usr/bin/grep -E' | |
| ac_cv_path_GREP=/usr/bin/grep | |
| ac_cv_path_PERL=/usr/bin/perl | |
| ac_cv_path_install='/usr/bin/install -c' | |
| ac_cv_prog_AWK=awk | |
| ac_cv_prog_CPP='clang -E' | |
| ac_cv_prog_ac_ct_CC=clang | |
| ac_cv_prog_cc_c89= | |
| ac_cv_prog_cc_g=yes | |
| ac_cv_prog_make_make_set=yes | |
| ac_cv_type__Bool=yes | |
| ac_cv_type_size_t=yes | |
| ac_cv_working_alloca_h=yes | |
| am_cv_CC_dependencies_compiler_type=none | |
| am_cv_make_support_nested_variables=yes | |
| ## ----------------- ## | |
| ## Output variables. ## | |
| ## ----------------- ## | |
| ACLOCAL='${SHELL} /private/tmp/trnascan-20221128-1367-ojvt96/tRNAscan-SE-2.0/missing aclocal-1.13' | |
| ALLOCA='' | |
| AMDEPBACKSLASH='' | |
| AMDEP_FALSE='' | |
| AMDEP_TRUE='#' | |
| AMTAR='$${TAR-tar}' | |
| AM_BACKSLASH='\' | |
| AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' | |
| AM_DEFAULT_VERBOSITY='1' | |
| AM_V='$(V)' | |
| AUTOCONF='${SHELL} /private/tmp/trnascan-20221128-1367-ojvt96/tRNAscan-SE-2.0/missing autoconf' | |
| AUTOHEADER='${SHELL} /private/tmp/trnascan-20221128-1367-ojvt96/tRNAscan-SE-2.0/missing autoheader' | |
| AUTOMAKE='${SHELL} /private/tmp/trnascan-20221128-1367-ojvt96/tRNAscan-SE-2.0/missing automake-1.13' | |
| AWK='awk' | |
| CC='clang' | |
| CCDEPMODE='depmode=none' | |
| CFLAGS='-O3' | |
| CPP='clang -E' | |
| CPPFLAGS='' | |
| CYGPATH_W='echo' | |
| DEFS='-DHAVE_CONFIG_H' | |
| DEPDIR='.deps' | |
| ECHO_C='\c' | |
| ECHO_N='' | |
| ECHO_T='' | |
| EGREP='/usr/bin/grep -E' | |
| EXEEXT='' | |
| GREP='/usr/bin/grep' | |
| INSTALL_DATA='${INSTALL} -m 644' | |
| INSTALL_PROGRAM='${INSTALL}' | |
| INSTALL_SCRIPT='${INSTALL}' | |
| INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' | |
| LDFLAGS='' | |
| LIBOBJS='' | |
| LIBS='' | |
| LTLIBOBJS='' | |
| MAKEINFO='${SHELL} /private/tmp/trnascan-20221128-1367-ojvt96/tRNAscan-SE-2.0/missing makeinfo' | |
| MKDIR_P='./install-sh -c -d' | |
| OBJEXT='o' | |
| PACKAGE='trnascan-se' | |
| PACKAGE_BUGREPORT='pchan@soe.ucsc.edu' | |
| PACKAGE_NAME='tRNAscan-SE' | |
| PACKAGE_STRING='tRNAscan-SE 2.0.0' | |
| PACKAGE_TARNAME='trnascan-se' | |
| PACKAGE_URL='' | |
| PACKAGE_VERSION='2.0.0' | |
| PATH_SEPARATOR=':' | |
| PERL='/usr/bin/perl' | |
| SET_MAKE='' | |
| SHELL='/bin/sh' | |
| STRIP='' | |
| VERSION='2.0.0' | |
| ac_ct_CC='clang' | |
| am__EXEEXT_FALSE='' | |
| am__EXEEXT_TRUE='#' | |
| am__fastdepCC_FALSE='' | |
| am__fastdepCC_TRUE='#' | |
| am__include='include' | |
| am__isrc='' | |
| am__leading_dot='.' | |
| am__nodep='' | |
| am__quote='' | |
| am__tar='$${TAR-tar} chof - "$$tardir"' | |
| am__untar='$${TAR-tar} xf -' | |
| bindir='${exec_prefix}/bin' | |
| build_alias='' | |
| datadir='${datarootdir}' | |
| datarootdir='${prefix}/share' | |
| docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' | |
| dvidir='${docdir}' | |
| exec_prefix='${prefix}' | |
| host_alias='' | |
| htmldir='${docdir}' | |
| includedir='${prefix}/include' | |
| infodir='${datarootdir}/info' | |
| install_sh='${SHELL} /private/tmp/trnascan-20221128-1367-ojvt96/tRNAscan-SE-2.0/install-sh' | |
| libdir='${exec_prefix}/lib' | |
| libexecdir='${exec_prefix}/libexec' | |
| localedir='${datarootdir}/locale' | |
| localstatedir='${prefix}/var' | |
| mandir='${datarootdir}/man' | |
| mkdir_p='$(MKDIR_P)' | |
| oldincludedir='/usr/include' | |
| pdfdir='${docdir}' | |
| prefix='/usr/local/Cellar/trnascan/2.0.11' | |
| program_transform_name='s,x,x,' | |
| psdir='${docdir}' | |
| sbindir='${exec_prefix}/sbin' | |
| sharedstatedir='${prefix}/com' | |
| sysconfdir='${prefix}/etc' | |
| target_alias='' | |
| ## ----------- ## | |
| ## confdefs.h. ## | |
| ## ----------- ## | |
| /* confdefs.h */ | |
| #define PACKAGE_NAME "tRNAscan-SE" | |
| #define PACKAGE_TARNAME "trnascan-se" | |
| #define PACKAGE_VERSION "2.0.0" | |
| #define PACKAGE_STRING "tRNAscan-SE 2.0.0" | |
| #define PACKAGE_BUGREPORT "pchan@soe.ucsc.edu" | |
| #define PACKAGE_URL "" | |
| #define STDC_HEADERS 1 | |
| #define HAVE_SYS_TYPES_H 1 | |
| #define HAVE_SYS_STAT_H 1 | |
| #define HAVE_STDLIB_H 1 | |
| #define HAVE_STRING_H 1 | |
| #define HAVE_MEMORY_H 1 | |
| #define HAVE_STRINGS_H 1 | |
| #define HAVE_INTTYPES_H 1 | |
| #define HAVE_STDINT_H 1 | |
| #define HAVE_UNISTD_H 1 | |
| #define HAVE_ALLOCA_H 1 | |
| #define HAVE_ALLOCA 1 | |
| #define HAVE_LIMITS_H 1 | |
| #define HAVE_MEMORY_H 1 | |
| #define HAVE_STDDEF_H 1 | |
| #define HAVE_STDLIB_H 1 | |
| #define HAVE_STRING_H 1 | |
| #define HAVE_UNISTD_H 1 | |
| #define HAVE__BOOL 1 | |
| #define HAVE_STDLIB_H 1 | |
| #define HAVE_MALLOC 1 | |
| #define HAVE_STDLIB_H 1 | |
| #define HAVE_REALLOC 1 | |
| #define HAVE_BZERO 1 | |
| #define HAVE_MEMSET 1 | |
| #define HAVE_REGCOMP 1 | |
| #define HAVE_SQRT 1 | |
| #define HAVE_STRCASECMP 1 | |
| #define HAVE_STRCHR 1 | |
| #define HAVE_STRSTR 1 | |
| #define PACKAGE "trnascan-se" | |
| #define VERSION "2.0.0" | |
| configure: exit 0 |
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