pgfSweave example file for concordance

pgfSweave-concordance.Rnw

\documentclass{article}
\usepackage{Sweave}
\usepackage{tikz}
\SweaveOpts{keep.source=TRUE,tidy=TRUE,concordance=TRUE}


\begin{document}

<<>>=
  # Small function with highlight=TRUE and tidy=TRUE and some additional garbage.......
  # garbage to see how it wraps.
@

<<>>=
    cip <- function(x=10, n=100, conf.level=0.95){phat <- x/n; z <- qnorm(1-(1 - conf.level)/2); SE <- sqrt(phat*(1-phat)/n); ME <- z*SE; c(phat-ME, phat+ME)}  # cip function
@

\end{document}

script to compile:

#!/bin/bash

R CMD pgfsweave --pgfsweave-only "$1"
pdflatex --shell-escape --synctex=1 "${1%.*}"
make -j 2 -f "${1%.*}".makefile
latexmk -pdf -silent -pdflatex='pdflatex --shell-escape --synctex=1 --file-line-error' "${1%.*}"
Rscript -e "library('patchDVI');patchSynctex('${1%.*}.synctex.gz')"